Wall clock time and date at job start Wed Apr 1 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47366 * 2 1 4 4 C 1.34420 * 124.34796 * 269.97771 * 3 2 1 5 5 O 1.21282 * 124.94361 * 0.45511 * 4 3 2 6 6 C 1.51384 * 110.12416 * 180.42494 * 4 3 2 7 7 C 1.54619 * 104.15039 * 16.25426 * 6 4 3 8 8 H 1.08999 * 110.97483 * 217.06738 * 7 6 4 9 9 C 1.50697 * 110.97317 * 93.33554 * 7 6 4 10 10 O 1.21287 * 120.00079 * 244.49795 * 9 7 6 11 11 N 1.34774 * 120.00188 * 64.48704 * 9 7 6 12 12 C 1.46499 * 119.99660 * 0.02562 * 11 9 7 13 13 C 1.46495 * 120.00311 * 180.02562 * 11 9 7 14 14 H 1.08996 * 109.47319 * 0.02562 * 13 11 9 15 15 C 1.53003 * 109.47256 * 240.00251 * 13 11 9 16 16 C 1.50706 * 109.47156 * 120.00507 * 13 11 9 17 17 H 1.07997 * 119.99914 * 35.01928 * 16 13 11 18 18 C 1.37876 * 119.99615 * 215.01654 * 16 13 11 19 19 N 1.31516 * 119.99426 * 184.89393 * 18 16 13 20 20 Si 1.86798 * 120.00231 * 4.89918 * 18 16 13 21 21 H 1.48497 * 109.47204 * 84.79853 * 20 18 16 22 22 H 1.48506 * 109.46920 * 204.79900 * 20 18 16 23 23 H 1.48490 * 109.47142 * 324.79598 * 20 18 16 24 24 C 1.46763 * 124.35207 * 89.99897 * 3 2 1 25 25 H 1.09000 * 110.24509 * 43.96359 * 24 3 2 26 26 C 1.50699 * 110.31942 * 282.00214 * 24 3 2 27 27 C 1.38674 * 120.41666 * 143.90727 * 26 24 3 28 28 C 1.38624 * 118.41998 * 180.02562 * 27 26 24 29 29 C 1.38224 * 119.16104 * 0.02562 * 28 27 26 30 30 N 1.31852 * 120.76612 * 359.97438 * 29 28 27 31 31 C 1.31891 * 121.72391 * 359.70451 * 30 29 28 32 32 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46538 * 300.00280 * 1 2 3 34 34 H 1.09000 * 109.47196 * 59.99980 * 1 2 3 35 35 H 1.09001 * 109.47277 * 239.99788 * 2 1 3 36 36 H 1.09000 * 109.47196 * 120.00020 * 2 1 3 37 37 H 1.09009 * 110.49632 * 257.59935 * 6 4 3 38 38 H 1.08993 * 110.52226 * 134.92623 * 6 4 3 39 39 H 1.08993 * 109.47769 * 269.99652 * 12 11 9 40 40 H 1.09006 * 109.47276 * 30.00091 * 12 11 9 41 41 H 1.08999 * 109.47305 * 149.99428 * 12 11 9 42 42 H 1.09005 * 109.46722 * 54.83965 * 15 13 11 43 43 H 1.08996 * 109.47344 * 174.83737 * 15 13 11 44 44 H 1.09000 * 109.47341 * 294.84106 * 15 13 11 45 45 H 0.97007 * 119.99400 * 179.97438 * 19 18 16 46 46 H 1.07997 * 120.79134 * 359.97438 * 27 26 24 47 47 H 1.08003 * 120.42229 * 179.97438 * 28 27 26 48 48 H 1.08002 * 119.61896 * 180.02562 * 29 28 27 49 49 H 1.07997 * 119.61796 * 180.30931 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2716 2.0960 -1.1098 5 8 2.1216 1.6942 -2.2443 6 6 2.7706 3.4760 -0.7379 7 6 3.1750 3.3438 0.7486 8 1 2.9318 4.2512 1.3014 9 6 4.6386 3.0104 0.8819 10 8 4.9776 1.9487 1.3602 11 7 5.5709 3.8920 0.4693 12 6 5.1613 5.1745 -0.1082 13 6 6.9936 3.5677 0.5983 14 1 7.1020 2.5795 1.0453 15 6 7.6753 4.6084 1.4889 16 6 7.6361 3.5750 -0.7650 17 1 7.3065 4.2803 -1.5135 18 6 8.6448 2.6813 -1.0564 19 7 9.2710 2.7503 -2.2108 20 14 9.1216 1.3726 0.1882 21 1 8.2257 0.1977 0.0390 22 1 10.5277 0.9558 -0.0459 23 1 8.9908 1.9238 1.5608 24 6 2.2944 2.1619 1.2117 25 1 2.8321 1.5530 1.9384 26 6 1.0087 2.6724 1.8095 27 6 0.8573 2.7521 3.1856 28 6 -0.3429 3.2272 3.6909 29 6 -1.3419 3.6027 2.8125 30 7 -1.1628 3.5134 1.5093 31 6 -0.0322 3.0719 0.9933 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.9758 4.2131 -0.8528 38 1 3.6340 3.7468 -1.3455 39 1 5.0477 5.0677 -1.1869 40 1 4.2113 5.4829 0.3285 41 1 5.9202 5.9276 0.1044 42 1 7.1525 4.6679 2.4435 43 1 8.7117 4.3175 1.6598 44 1 7.6471 5.5812 0.9979 45 1 9.9810 2.1218 -2.4157 46 1 1.6552 2.4503 3.8480 47 1 -0.4958 3.3024 4.7574 48 1 -2.2798 3.9743 3.1981 49 1 0.0795 3.0175 -0.0795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433578928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:20 Heat of formation + Delta-G solvation = -44.550552 kcal Electronic energy + Delta-G solvation = -32024.394446 eV Core-core repulsion = 27950.927288 eV Total energy + Delta-G solvation = -4073.467158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.60133 -40.81742 -40.27190 -37.84799 -37.08077 -35.33175 -34.58709 -33.56823 -32.46919 -32.03991 -30.47839 -28.57377 -27.70702 -27.24426 -25.64682 -24.52639 -24.05592 -23.20253 -22.10508 -20.53128 -20.01677 -19.28288 -18.53658 -17.95730 -17.71012 -17.44432 -17.33965 -16.63167 -16.46204 -16.04060 -15.79667 -15.66926 -15.22175 -14.93077 -14.76741 -14.57370 -14.45270 -14.43009 -14.21982 -14.17945 -13.97317 -13.85073 -13.37651 -13.28688 -13.09908 -13.05647 -12.96406 -12.76403 -12.70587 -12.57407 -12.44196 -12.28977 -12.13436 -11.85419 -11.27513 -10.99911 -10.80804 -10.80361 -10.62855 -10.48021 -10.01925 -9.79987 -9.37350 -8.38256 -6.41826 0.10126 0.35282 1.24631 1.31725 1.38145 1.40288 1.63866 1.86647 2.19467 2.25920 2.80682 3.02382 3.19351 3.24581 3.34368 3.58457 3.71193 3.82138 3.98149 4.01732 4.06085 4.14102 4.17723 4.28688 4.40587 4.44576 4.47944 4.52666 4.58693 4.65648 4.67985 4.70183 4.75252 4.77540 4.82263 4.83823 4.88152 5.05889 5.14733 5.16059 5.22551 5.24964 5.39148 5.51946 5.53960 5.76788 5.80016 5.97125 6.13425 6.64509 6.71996 6.99939 7.03952 7.21171 7.31829 8.77376 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.003640 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.342377 B = 7691.057587 C = 8288.438464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.117 3.883 3 N -0.605 5.605 4 C 0.508 3.492 5 O -0.573 6.573 6 C -0.147 4.147 7 C -0.099 4.099 8 H 0.162 0.838 9 C 0.506 3.494 10 O -0.590 6.590 11 N -0.591 5.591 12 C 0.075 3.925 13 C 0.223 3.777 14 H 0.040 0.960 15 C -0.139 4.139 16 C -0.518 4.518 17 H 0.052 0.948 18 C 0.026 3.974 19 N -0.936 5.936 20 Si 0.926 3.074 21 H -0.289 1.289 22 H -0.279 1.279 23 H -0.244 1.244 24 C 0.197 3.803 25 H 0.110 0.890 26 C -0.147 4.147 27 C -0.060 4.060 28 C -0.159 4.159 29 C 0.092 3.908 30 N -0.509 5.509 31 C 0.112 3.888 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.267 0.733 46 H 0.154 0.846 47 H 0.168 0.832 48 H 0.180 0.820 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 3.985 15.822 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 N -0.337 5.337 4 C 0.297 3.703 5 O -0.453 6.453 6 C -0.186 4.186 7 C -0.120 4.120 8 H 0.179 0.821 9 C 0.294 3.706 10 O -0.472 6.472 11 N -0.320 5.320 12 C -0.067 4.067 13 C 0.120 3.880 14 H 0.058 0.942 15 C -0.197 4.197 16 C -0.557 4.557 17 H 0.070 0.930 18 C -0.174 4.174 19 N -0.575 5.575 20 Si 0.751 3.249 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.167 1.167 24 C 0.092 3.908 25 H 0.128 0.872 26 C -0.150 4.150 27 C -0.086 4.086 28 C -0.179 4.179 29 C -0.064 4.064 30 N -0.217 5.217 31 C -0.045 4.045 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.168 0.832 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.172 0.828 47 H 0.186 0.814 48 H 0.197 0.803 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.969 3.342 14.798 26.698 hybrid contribution 1.606 -1.257 0.041 2.040 sum -20.363 2.085 14.838 25.282 Atomic orbital electron populations 1.22060 0.94163 1.03188 1.01594 1.21475 0.95298 0.80410 1.03258 1.48377 1.64780 1.14036 1.06479 1.21351 0.76034 0.88760 0.84182 1.90695 1.55555 1.76326 1.22718 1.22587 1.04912 0.95833 0.95312 1.22295 0.90177 1.01611 0.97890 0.82069 1.20744 0.88542 0.83580 0.77734 1.90625 1.82883 1.25494 1.48166 1.48200 1.06601 1.18265 1.58948 1.21984 1.02139 0.84287 0.98296 1.19120 0.78171 0.96034 0.94652 0.94155 1.22064 0.99709 0.99841 0.98100 1.21395 1.17785 1.18101 0.98422 0.93017 1.25664 0.96214 0.98907 0.96588 1.70003 1.24781 1.38415 1.24329 0.86076 0.77167 0.80154 0.81481 1.21541 1.20496 1.16731 1.20268 0.91749 0.91593 0.87181 0.87245 1.20797 0.96173 1.02751 0.95319 1.21741 0.98502 0.94782 0.93611 1.22464 0.93273 0.99128 1.03010 1.23335 1.00226 0.94804 0.88066 1.67750 1.23306 1.14415 1.16276 1.22349 0.88489 0.93868 0.99782 0.89713 0.92231 0.93814 0.91781 0.88753 0.83216 0.87953 0.93466 0.87674 0.90404 0.92734 0.93420 0.91766 0.92400 0.82804 0.81401 0.80328 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.67 71.98 0.70 -2.35 16 2 C 0.12 2.85 6.64 86.38 0.57 3.43 16 3 N -0.60 -16.41 2.04 -798.17 -1.63 -18.04 16 4 C 0.51 16.42 6.94 87.93 0.61 17.03 16 5 O -0.57 -23.50 17.60 -3.04 -0.05 -23.56 16 6 C -0.15 -3.65 5.20 30.62 0.16 -3.49 16 7 C -0.10 -2.28 2.06 -10.48 -0.02 -2.31 16 8 H 0.16 2.41 7.15 -2.39 -0.02 2.40 16 9 C 0.51 17.62 7.04 87.66 0.62 18.24 16 10 O -0.59 -25.36 14.84 -3.05 -0.05 -25.40 16 11 N -0.59 -21.61 2.74 -826.80 -2.26 -23.87 16 12 C 0.07 2.03 8.18 127.77 1.04 3.08 16 13 C 0.22 10.03 2.30 44.25 0.10 10.13 16 14 H 0.04 2.03 4.05 -2.39 -0.01 2.02 16 15 C -0.14 -5.20 9.04 71.98 0.65 -4.54 16 16 C -0.52 -28.27 8.82 25.60 0.23 -28.04 16 17 H 0.05 3.03 7.67 -2.91 -0.02 3.01 16 18 C 0.03 1.48 5.47 84.65 0.46 1.94 16 19 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 20 Si 0.93 46.07 26.99 68.60 1.85 47.92 16 21 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.24 -11.20 6.82 99.48 0.68 -10.52 16 24 C 0.20 4.41 2.71 44.70 0.12 4.53 16 25 H 0.11 2.70 6.90 -2.39 -0.02 2.68 16 26 C -0.15 -2.52 4.35 -19.77 -0.09 -2.61 16 27 C -0.06 -0.76 9.84 22.47 0.22 -0.54 16 28 C -0.16 -1.55 10.11 22.36 0.23 -1.32 16 29 C 0.09 1.17 11.18 84.69 0.95 2.12 16 30 N -0.51 -9.68 10.36 -195.85 -2.03 -11.71 16 31 C 0.11 2.16 8.63 84.67 0.73 2.89 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.15 6.48 -2.39 -0.02 1.13 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.15 2.56 8.04 -2.38 -0.02 2.54 16 38 H 0.10 2.99 5.83 -2.39 -0.01 2.97 16 39 H 0.05 1.39 7.08 -2.39 -0.02 1.37 16 40 H 0.10 1.78 6.29 -2.38 -0.01 1.77 16 41 H 0.08 2.07 6.53 -2.39 -0.02 2.05 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 2.22 6.88 -2.39 -0.02 2.20 16 45 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 46 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 48 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 49 H 0.13 2.91 6.42 -2.91 -0.02 2.89 16 Total: -1.00 -81.16 388.20 4.35 -76.81 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.94 Total: 17.21 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 7.28 Total: 18.17 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -5.62 Total: -111.16 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.10 Total: -48.96 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.85 Total: 47.92 kcal Total: -81.16 4.35 -76.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433578928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.259 kcal (2) G-P(sol) polarization free energy of solvation -81.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds