Wall clock time and date at job start Wed Apr 1 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47130 * 2 1 4 4 C 1.34782 * 119.99623 * 180.02562 * 3 2 1 5 5 O 1.21587 * 120.00208 * 4.97532 * 4 3 2 6 6 N 1.34780 * 119.99429 * 184.98335 * 4 3 2 7 7 C 1.46968 * 120.58983 * 174.66337 * 6 4 3 8 8 C 1.53374 * 108.63265 * 124.74948 * 7 6 4 9 9 N 1.46965 * 108.63687 * 49.42165 * 8 7 6 10 10 C 1.34778 * 120.59214 * 124.74898 * 9 8 7 11 11 O 1.21287 * 120.00015 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99646 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47326 * 60.00862 * 12 10 9 14 14 C 1.50698 * 109.47201 * 299.99865 * 12 10 9 15 15 H 1.08002 * 120.00501 * 335.11142 * 14 12 10 16 16 C 1.37878 * 119.99587 * 155.11298 * 14 12 10 17 17 N 1.31520 * 120.00122 * 174.94023 * 16 14 12 18 18 Si 1.86799 * 120.00133 * 354.93356 * 16 14 12 19 19 H 1.48494 * 109.47269 * 94.83231 * 18 16 14 20 20 H 1.48503 * 109.47137 * 214.83014 * 18 16 14 21 21 H 1.48495 * 109.47032 * 334.82886 * 18 16 14 22 22 C 1.50707 * 109.46766 * 180.02562 * 12 10 9 23 23 C 1.38226 * 120.00307 * 64.89599 * 22 12 10 24 24 C 1.38243 * 119.99969 * 179.81150 * 23 22 12 25 25 C 1.38234 * 119.99945 * 0.39730 * 24 23 22 26 26 C 1.38233 * 119.99756 * 359.85361 * 25 24 23 27 27 C 1.38234 * 120.00364 * 359.95710 * 26 25 24 28 28 C 1.46961 * 118.81159 * 304.77260 * 9 8 7 29 29 C 1.46965 * 120.59609 * 354.63634 * 6 4 3 30 30 H 1.08988 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47010 * 300.00873 * 1 2 3 32 32 H 1.09001 * 109.47125 * 59.99874 * 1 2 3 33 33 H 1.08998 * 109.47512 * 239.99645 * 2 1 3 34 34 H 1.09005 * 109.46874 * 119.99406 * 2 1 3 35 35 H 0.96996 * 120.00589 * 359.97438 * 3 2 1 36 36 H 1.08999 * 109.60922 * 5.00872 * 7 6 4 37 37 H 1.08994 * 109.74883 * 244.57171 * 7 6 4 38 38 H 1.09001 * 109.61231 * 169.17131 * 8 7 6 39 39 H 1.09007 * 109.60828 * 289.67480 * 8 7 6 40 40 H 0.96989 * 120.00100 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.00310 * 359.97438 * 23 22 12 42 42 H 1.08002 * 119.99892 * 180.22862 * 24 23 22 43 43 H 1.07997 * 120.00087 * 179.83703 * 25 24 23 44 44 H 1.08002 * 120.00070 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00084 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.61236 * 295.48330 * 28 9 8 47 47 H 1.08999 * 109.60664 * 174.96504 * 28 9 8 48 48 H 1.08992 * 109.61125 * 354.99671 * 29 6 4 49 49 H 1.09003 * 109.60747 * 115.51012 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1328 0.7071 -0.0923 6 7 3.7935 2.8938 0.1009 7 6 5.2324 3.1689 0.2191 8 6 5.6393 4.1381 -0.8978 9 7 4.7002 5.2685 -0.9041 10 6 5.1503 6.5348 -0.8027 11 8 6.3401 6.7496 -0.7057 12 6 4.1753 7.6839 -0.8100 13 1 3.4867 7.5814 0.0287 14 6 3.3990 7.6758 -2.1015 15 1 3.8212 7.2156 -2.9826 16 6 2.1495 8.2559 -2.1584 17 7 1.5140 8.3376 -3.3069 18 14 1.3591 8.9257 -0.6040 19 1 1.6429 10.3789 -0.4910 20 1 -0.1092 8.7113 -0.6633 21 1 1.9151 8.2194 0.5779 22 6 4.9291 8.9830 -0.6857 23 6 5.7902 9.3814 -1.6909 24 6 6.4786 10.5750 -1.5786 25 6 6.3121 11.3660 -0.4573 26 6 5.4549 10.9650 0.5504 27 6 4.7635 9.7734 0.4363 28 6 3.2614 4.9933 -1.0223 29 6 2.8544 4.0242 0.0946 30 1 -0.3633 -1.0275 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.3881 2.1185 -0.0004 36 1 5.7921 2.2391 0.1185 37 1 5.4427 3.6196 1.1890 38 1 6.6500 4.5032 -0.7152 39 1 5.6011 3.6253 -1.8590 40 1 0.6349 8.7454 -3.3468 41 1 5.9231 8.7615 -2.5653 42 1 7.1485 10.8880 -2.3657 43 1 6.8519 12.2972 -0.3683 44 1 5.3251 11.5828 1.4267 45 1 4.0942 9.4599 1.2238 46 1 3.0539 4.5415 -1.9923 47 1 2.7017 5.9232 -0.9217 48 1 1.8438 3.6592 -0.0881 49 1 2.8927 4.5369 1.0558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001440706446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:55 Heat of formation + Delta-G solvation = -20.529669 kcal Electronic energy + Delta-G solvation = -31283.258839 eV Core-core repulsion = 27210.833304 eV Total energy + Delta-G solvation = -4072.425535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.50070 -39.47445 -38.16266 -36.67463 -35.38263 -34.02316 -33.48801 -31.74241 -31.28401 -30.20438 -30.14563 -28.15974 -27.02053 -24.08311 -23.62709 -23.02680 -22.21915 -21.85709 -20.89462 -19.89274 -18.91509 -17.58816 -17.23519 -16.49548 -16.24005 -16.01359 -15.84892 -15.38690 -14.82886 -14.70390 -14.61366 -14.51562 -14.18099 -14.09871 -13.82547 -13.32589 -13.16052 -12.83321 -12.76532 -12.67601 -12.50099 -12.19960 -12.15765 -11.95597 -11.94731 -11.67914 -11.42518 -11.23252 -11.17437 -11.10341 -10.96866 -10.49660 -10.32615 -10.08054 -9.93383 -9.62159 -9.26225 -8.99565 -8.89329 -8.75381 -8.15251 -7.93607 -7.84564 -6.39300 -4.42117 2.12815 2.19591 2.57663 3.05822 3.12839 3.17953 3.20244 3.46311 3.60251 3.82849 4.12532 4.58112 4.76681 4.89345 4.89958 4.93481 5.04801 5.12564 5.16757 5.35985 5.48213 5.50567 5.53912 5.58047 5.61030 5.69010 5.72081 5.76981 5.82368 5.88947 5.90899 6.05838 6.10433 6.25241 6.28650 6.37082 6.40718 6.43171 6.50404 6.69761 6.82909 6.87439 7.04665 7.15112 7.19857 7.23983 7.56236 7.77085 7.87530 7.98964 8.14478 8.56517 8.60816 8.95582 9.16778 10.71188 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.003466 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.127372 B = 8077.421853 C = 9317.805355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.750 5.750 4 C 0.708 3.292 5 O -0.596 6.596 6 N -0.626 5.626 7 C 0.118 3.882 8 C 0.097 3.903 9 N -0.608 5.608 10 C 0.540 3.460 11 O -0.557 6.557 12 C 0.020 3.980 13 H 0.071 0.929 14 C -0.510 4.510 15 H 0.083 0.917 16 C 0.088 3.912 17 N -0.878 5.878 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.030 4.030 23 C -0.070 4.070 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.137 4.137 28 C 0.099 3.901 29 C 0.091 3.909 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.070 0.930 47 H 0.128 0.872 48 H 0.083 0.917 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -8.102 7.790 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.409 5.409 4 C 0.410 3.590 5 O -0.475 6.475 6 N -0.364 5.364 7 C -0.006 4.006 8 C -0.027 4.027 9 N -0.342 5.342 10 C 0.331 3.669 11 O -0.435 6.435 12 C -0.002 4.002 13 H 0.088 0.912 14 C -0.548 4.548 15 H 0.101 0.899 16 C -0.118 4.118 17 N -0.513 5.513 18 Si 0.684 3.316 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.031 4.031 23 C -0.088 4.088 24 C -0.147 4.147 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.025 4.025 29 C -0.033 4.033 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.088 0.912 47 H 0.146 0.854 48 H 0.101 0.899 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.081 -8.615 7.673 11.588 hybrid contribution -1.070 0.890 0.609 1.519 sum -2.151 -7.726 8.282 11.528 Atomic orbital electron populations 1.22016 0.94519 1.03129 1.02668 1.21122 0.93777 0.82026 1.02168 1.45366 1.05597 1.09090 1.80806 1.15823 0.82600 0.82971 0.77610 1.90888 1.55042 1.43237 1.58292 1.47257 1.07791 1.04131 1.77186 1.21880 0.79764 1.00175 0.98759 1.21883 0.95319 0.87207 0.98295 1.47810 1.06883 1.05407 1.74075 1.21100 0.89336 0.83504 0.72980 1.90598 1.17708 1.84448 1.50752 1.18616 0.93525 0.87155 1.00855 0.91163 1.20515 1.00665 1.39272 0.94323 0.89903 1.24919 0.96828 0.94205 0.95819 1.69866 1.14497 1.42639 1.24309 0.87092 0.78897 0.81291 0.84327 1.19221 1.20888 1.18356 1.20061 0.94011 0.96647 0.92389 1.20844 0.94559 0.95102 0.98276 1.21044 1.00429 0.95483 0.97776 1.20868 1.00336 0.99725 0.95081 1.20880 0.98225 0.96861 0.98779 1.20966 1.00968 0.95881 0.97745 1.22304 0.81905 1.01136 0.97144 1.22263 0.92425 0.87813 1.00767 0.90783 0.92019 0.91804 0.91660 0.91907 0.76652 0.88152 0.91381 0.88169 0.91627 0.92049 0.86474 0.87106 0.87318 0.87278 0.87454 0.91167 0.85397 0.89881 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.03 37.16 0.37 -0.69 16 2 C 0.13 1.25 6.40 -4.04 -0.03 1.23 16 3 N -0.75 -8.28 5.47 -65.22 -0.36 -8.64 16 4 C 0.71 10.26 8.29 -86.91 -0.72 9.54 16 5 O -0.60 -10.62 15.76 5.29 0.08 -10.54 16 6 N -0.63 -8.53 2.95 -178.21 -0.53 -9.05 16 7 C 0.12 1.62 6.60 -3.59 -0.02 1.60 16 8 C 0.10 1.49 6.59 -3.60 -0.02 1.47 16 9 N -0.61 -10.66 2.95 -172.48 -0.51 -11.17 16 10 C 0.54 11.17 6.97 -10.99 -0.08 11.09 16 11 O -0.56 -12.70 14.77 5.55 0.08 -12.62 16 12 C 0.02 0.42 1.10 -94.07 -0.10 0.32 16 13 H 0.07 1.45 4.62 -51.93 -0.24 1.21 16 14 C -0.51 -12.12 5.87 -34.44 -0.20 -12.33 16 15 H 0.08 2.22 8.05 -52.49 -0.42 1.80 16 16 C 0.09 2.15 5.33 -17.82 -0.10 2.05 16 17 N -0.88 -23.35 13.96 55.43 0.77 -22.58 16 18 Si 0.86 18.41 26.69 -169.99 -4.54 13.88 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.26 -5.03 5.90 56.52 0.33 -4.70 16 22 C -0.03 -0.65 3.88 -104.62 -0.41 -1.06 16 23 C -0.07 -1.50 8.25 -39.58 -0.33 -1.82 16 24 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 25 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 26 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.14 -2.72 8.98 -39.58 -0.36 -3.08 16 28 C 0.10 1.56 5.79 -3.60 -0.02 1.54 16 29 C 0.09 1.13 6.56 -3.59 -0.02 1.11 16 30 H 0.07 0.39 8.14 -51.94 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.40 3.57 5.95 -40.82 -0.24 3.32 16 36 H 0.10 1.39 6.99 -51.93 -0.36 1.03 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.60 6.99 -51.93 -0.36 1.23 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.12 2.62 7.93 -52.48 -0.42 2.20 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.96 7.95 -52.48 -0.42 1.54 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.13 2.25 4.79 -51.93 -0.25 2.00 16 48 H 0.08 0.80 5.62 -51.93 -0.29 0.51 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -31.05 388.08 -9.64 -40.70 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.28 Total: 11.57 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -3.22 Total: 2.61 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.62 Total: -51.44 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.16 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.54 Total: 13.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.05 -9.64 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440706446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.168 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds