Wall clock time and date at job start Wed Apr 1 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47130 * 2 1 4 4 C 1.34782 * 119.99623 * 180.02562 * 3 2 1 5 5 O 1.21587 * 120.00208 * 4.97532 * 4 3 2 6 6 N 1.34780 * 119.99429 * 184.98335 * 4 3 2 7 7 C 1.46968 * 120.58983 * 174.66337 * 6 4 3 8 8 C 1.53374 * 108.63265 * 124.74948 * 7 6 4 9 9 N 1.46965 * 108.63687 * 49.42165 * 8 7 6 10 10 C 1.34778 * 120.59214 * 124.74898 * 9 8 7 11 11 O 1.21287 * 120.00015 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99646 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47326 * 60.00862 * 12 10 9 14 14 C 1.50698 * 109.47201 * 299.99865 * 12 10 9 15 15 H 1.08002 * 120.00501 * 335.11142 * 14 12 10 16 16 C 1.37878 * 119.99587 * 155.11298 * 14 12 10 17 17 N 1.31520 * 120.00122 * 174.94023 * 16 14 12 18 18 Si 1.86799 * 120.00133 * 354.93356 * 16 14 12 19 19 H 1.48494 * 109.47269 * 94.83231 * 18 16 14 20 20 H 1.48503 * 109.47137 * 214.83014 * 18 16 14 21 21 H 1.48495 * 109.47032 * 334.82886 * 18 16 14 22 22 C 1.50707 * 109.46766 * 180.02562 * 12 10 9 23 23 C 1.38226 * 120.00307 * 64.89599 * 22 12 10 24 24 C 1.38243 * 119.99969 * 179.81150 * 23 22 12 25 25 C 1.38234 * 119.99945 * 0.39730 * 24 23 22 26 26 C 1.38233 * 119.99756 * 359.85361 * 25 24 23 27 27 C 1.38234 * 120.00364 * 359.95710 * 26 25 24 28 28 C 1.46961 * 118.81159 * 304.77260 * 9 8 7 29 29 C 1.46965 * 120.59609 * 354.63634 * 6 4 3 30 30 H 1.08988 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47010 * 300.00873 * 1 2 3 32 32 H 1.09001 * 109.47125 * 59.99874 * 1 2 3 33 33 H 1.08998 * 109.47512 * 239.99645 * 2 1 3 34 34 H 1.09005 * 109.46874 * 119.99406 * 2 1 3 35 35 H 0.96996 * 120.00589 * 359.97438 * 3 2 1 36 36 H 1.08999 * 109.60922 * 5.00872 * 7 6 4 37 37 H 1.08994 * 109.74883 * 244.57171 * 7 6 4 38 38 H 1.09001 * 109.61231 * 169.17131 * 8 7 6 39 39 H 1.09007 * 109.60828 * 289.67480 * 8 7 6 40 40 H 0.96989 * 120.00100 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.00310 * 359.97438 * 23 22 12 42 42 H 1.08002 * 119.99892 * 180.22862 * 24 23 22 43 43 H 1.07997 * 120.00087 * 179.83703 * 25 24 23 44 44 H 1.08002 * 120.00070 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00084 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.61236 * 295.48330 * 28 9 8 47 47 H 1.08999 * 109.60664 * 174.96504 * 28 9 8 48 48 H 1.08992 * 109.61125 * 354.99671 * 29 6 4 49 49 H 1.09003 * 109.60747 * 115.51012 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1328 0.7071 -0.0923 6 7 3.7935 2.8938 0.1009 7 6 5.2324 3.1689 0.2191 8 6 5.6393 4.1381 -0.8978 9 7 4.7002 5.2685 -0.9041 10 6 5.1503 6.5348 -0.8027 11 8 6.3401 6.7496 -0.7057 12 6 4.1753 7.6839 -0.8100 13 1 3.4867 7.5814 0.0287 14 6 3.3990 7.6758 -2.1015 15 1 3.8212 7.2156 -2.9826 16 6 2.1495 8.2559 -2.1584 17 7 1.5140 8.3376 -3.3069 18 14 1.3591 8.9257 -0.6040 19 1 1.6429 10.3789 -0.4910 20 1 -0.1092 8.7113 -0.6633 21 1 1.9151 8.2194 0.5779 22 6 4.9291 8.9830 -0.6857 23 6 5.7902 9.3814 -1.6909 24 6 6.4786 10.5750 -1.5786 25 6 6.3121 11.3660 -0.4573 26 6 5.4549 10.9650 0.5504 27 6 4.7635 9.7734 0.4363 28 6 3.2614 4.9933 -1.0223 29 6 2.8544 4.0242 0.0946 30 1 -0.3633 -1.0275 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.3881 2.1185 -0.0004 36 1 5.7921 2.2391 0.1185 37 1 5.4427 3.6196 1.1890 38 1 6.6500 4.5032 -0.7152 39 1 5.6011 3.6253 -1.8590 40 1 0.6349 8.7454 -3.3468 41 1 5.9231 8.7615 -2.5653 42 1 7.1485 10.8880 -2.3657 43 1 6.8519 12.2972 -0.3683 44 1 5.3251 11.5828 1.4267 45 1 4.0942 9.4599 1.2238 46 1 3.0539 4.5415 -1.9923 47 1 2.7017 5.9232 -0.9217 48 1 1.8438 3.6592 -0.0881 49 1 2.8927 4.5369 1.0558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001440706446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:53 Heat of formation + Delta-G solvation = -39.750012 kcal Electronic energy + Delta-G solvation = -31284.092296 eV Core-core repulsion = 27210.833304 eV Total energy + Delta-G solvation = -4073.258991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74575 -40.90658 -39.58854 -38.01556 -36.36992 -35.71373 -34.87082 -33.40230 -32.51503 -31.62111 -31.09770 -29.66780 -28.37006 -25.63789 -24.91287 -24.09052 -23.42930 -23.28031 -22.24753 -21.14210 -20.15561 -19.08230 -18.93164 -17.81140 -17.52899 -17.44904 -16.88995 -16.80042 -16.40330 -16.08138 -15.73742 -15.56197 -15.51539 -15.40083 -15.15751 -14.80431 -14.51790 -14.36388 -14.23449 -13.98116 -13.73803 -13.47926 -13.39035 -13.20419 -12.96806 -12.77173 -12.74454 -12.43699 -12.41249 -12.36418 -12.34971 -12.00270 -11.96108 -11.53602 -11.38584 -11.28920 -10.84310 -10.52132 -10.38655 -9.99847 -9.63709 -9.36771 -9.24471 -8.30262 -6.36655 0.64468 0.70914 1.35537 1.43212 1.47699 1.51311 1.80195 2.06964 2.22667 2.33614 2.85573 2.99193 3.14349 3.75626 3.83543 3.97606 4.10321 4.13981 4.17611 4.20912 4.26210 4.28869 4.34491 4.35332 4.39717 4.49085 4.56052 4.61863 4.66799 4.75638 4.81334 4.86510 4.91428 4.94954 5.07076 5.09750 5.19190 5.26371 5.32348 5.37388 5.42765 5.52547 5.62901 5.70590 5.74755 5.88166 5.96352 6.21851 6.30011 6.48237 6.63351 6.88154 7.24835 7.34597 7.48019 8.83883 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.003466 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.127372 B = 8077.421853 C = 9317.805355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 N -0.737 5.737 4 C 0.703 3.297 5 O -0.633 6.633 6 N -0.626 5.626 7 C 0.128 3.872 8 C 0.099 3.901 9 N -0.605 5.605 10 C 0.534 3.466 11 O -0.584 6.584 12 C 0.026 3.974 13 H 0.083 0.917 14 C -0.493 4.493 15 H 0.035 0.965 16 C 0.045 3.955 17 N -0.927 5.927 18 Si 0.909 3.091 19 H -0.278 1.278 20 H -0.278 1.278 21 H -0.223 1.223 22 C -0.058 4.058 23 C -0.102 4.102 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.152 4.152 28 C 0.098 3.902 29 C 0.100 3.900 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.408 0.592 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.270 0.730 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.124 0.876 46 H 0.059 0.941 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -7.324 10.817 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.006 3.994 3 N -0.396 5.396 4 C 0.405 3.595 5 O -0.515 6.515 6 N -0.363 5.363 7 C 0.003 3.997 8 C -0.024 4.024 9 N -0.337 5.337 10 C 0.325 3.675 11 O -0.465 6.465 12 C 0.005 3.995 13 H 0.101 0.899 14 C -0.531 4.531 15 H 0.053 0.947 16 C -0.156 4.156 17 N -0.565 5.565 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.203 1.203 21 H -0.146 1.146 22 C -0.059 4.059 23 C -0.121 4.121 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.144 4.144 27 C -0.170 4.170 28 C -0.025 4.025 29 C -0.023 4.023 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.149 0.851 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.142 0.858 46 H 0.077 0.923 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.223 -7.867 10.715 13.478 hybrid contribution -0.626 0.648 -0.440 1.003 sum -2.848 -7.219 10.275 12.876 Atomic orbital electron populations 1.21967 0.91823 1.04323 1.03232 1.21263 0.95884 0.80920 1.01358 1.45358 1.04513 1.10294 1.79469 1.16019 0.83410 0.82621 0.77453 1.90863 1.56275 1.44331 1.59998 1.47268 1.07819 1.04317 1.76928 1.21753 0.80186 0.99450 0.98268 1.21937 0.94672 0.86762 0.99037 1.47875 1.08093 1.05052 1.72727 1.21068 0.88893 0.84403 0.73148 1.90569 1.18575 1.85034 1.52308 1.18515 0.93559 0.87934 0.99505 0.89941 1.20322 1.00701 1.38143 0.93909 0.94654 1.25559 0.97151 0.94384 0.98530 1.69999 1.15106 1.44606 1.26772 0.86260 0.78304 0.80078 0.82072 1.20365 1.20317 1.14605 1.20142 0.95054 0.97007 0.93668 1.20819 0.96686 0.96572 0.97976 1.21349 1.00136 0.94604 0.99241 1.21336 0.99753 1.00557 0.93850 1.21373 0.96846 0.96228 0.99954 1.21253 1.01757 0.96542 0.97421 1.22302 0.80615 1.01340 0.98286 1.22284 0.93490 0.86704 0.99869 0.89331 0.91016 0.91574 0.92962 0.92324 0.75297 0.88213 0.90252 0.88853 0.91993 0.92074 0.89470 0.85059 0.83388 0.83420 0.85788 0.92275 0.86910 0.86732 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.03 71.98 0.72 -0.88 16 2 C 0.13 2.25 6.40 86.38 0.55 2.80 16 3 N -0.74 -14.90 5.47 -478.52 -2.62 -17.52 16 4 C 0.70 19.55 8.29 179.05 1.48 21.03 16 5 O -0.63 -22.37 15.76 -3.99 -0.06 -22.43 16 6 N -0.63 -16.20 2.95 -836.00 -2.46 -18.66 16 7 C 0.13 3.42 6.60 86.42 0.57 3.99 16 8 C 0.10 3.12 6.59 86.42 0.57 3.69 16 9 N -0.61 -21.58 2.95 -818.00 -2.41 -23.99 16 10 C 0.53 22.67 6.97 87.66 0.61 23.28 16 11 O -0.58 -27.51 14.77 -3.05 -0.05 -27.56 16 12 C 0.03 1.13 1.10 -13.03 -0.01 1.11 16 13 H 0.08 3.29 4.62 -2.39 -0.01 3.28 16 14 C -0.49 -24.40 5.87 25.60 0.15 -24.25 16 15 H 0.04 2.04 8.05 -2.91 -0.02 2.02 16 16 C 0.04 2.23 5.33 84.65 0.45 2.68 16 17 N -0.93 -51.07 13.96 21.45 0.30 -50.77 16 18 Si 0.91 37.04 26.69 68.60 1.83 38.87 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.22 -7.71 5.90 99.48 0.59 -7.12 16 22 C -0.06 -2.50 3.88 -19.86 -0.08 -2.58 16 23 C -0.10 -4.52 8.25 22.27 0.18 -4.33 16 24 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 25 C -0.14 -4.31 10.05 22.27 0.22 -4.08 16 26 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 27 C -0.15 -5.67 8.98 22.27 0.20 -5.47 16 28 C 0.10 3.07 5.79 86.42 0.50 3.57 16 29 C 0.10 2.26 6.56 86.42 0.57 2.82 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.41 6.19 5.95 -92.71 -0.55 5.64 16 36 H 0.10 2.74 6.99 -2.39 -0.02 2.73 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 3.07 6.99 -2.39 -0.02 3.05 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.27 13.99 8.31 -92.72 -0.77 13.22 16 41 H 0.09 4.23 7.93 -2.91 -0.02 4.20 16 42 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 45 H 0.12 4.10 7.95 -2.91 -0.02 4.08 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.11 3.94 4.79 -2.39 -0.01 3.92 16 48 H 0.11 1.86 5.62 -2.39 -0.01 1.84 16 49 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.03 388.08 1.97 -69.06 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.29 Total: 38.13 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 7.14 Total: 14.87 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -7.19 Total: -110.94 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.11 Total: -49.99 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 1.83 Total: 38.87 kcal Total: -71.03 1.97 -69.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440706446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.311 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds