Wall clock time and date at job start Wed Apr 1 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47314 * 2 1 4 4 C 1.35424 * 117.00288 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.79911 * 0.30861 * 4 3 2 6 6 C 1.31886 * 121.79975 * 180.31889 * 5 4 3 7 7 C 1.38354 * 121.18427 * 359.65194 * 6 5 4 8 8 C 1.38332 * 119.46073 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.82916 * 179.97438 * 8 7 6 10 10 C 1.39991 * 118.34913 * 0.02562 * 8 7 6 11 11 C 1.47521 * 120.59856 * 180.02562 * 10 8 7 12 12 O 1.21589 * 120.00143 * 89.99972 * 11 10 8 13 13 N 1.34783 * 119.99680 * 269.99867 * 11 10 8 14 14 C 1.47886 * 134.33900 * 180.02562 * 13 11 10 15 15 C 1.52376 * 85.59017 * 156.49434 * 14 13 11 16 16 C 1.47886 * 134.34022 * 359.97027 * 13 11 10 17 17 C 1.53876 * 116.28084 * 264.17806 * 15 14 13 18 18 C 1.54601 * 102.63063 * 264.38118 * 17 15 14 19 19 N 1.47136 * 107.47544 * 339.39360 * 18 17 15 20 20 C 1.36938 * 125.58219 * 178.97076 * 19 18 17 21 21 H 1.08003 * 120.00338 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00180 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47391 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46843 * 120.00694 * 24 22 20 27 27 H 1.48501 * 109.47147 * 239.99857 * 24 22 20 28 28 C 1.47720 * 108.83064 * 359.00447 * 19 18 17 29 29 H 1.08997 * 109.47322 * 300.00528 * 1 2 3 30 30 H 1.09008 * 109.46819 * 60.00220 * 1 2 3 31 31 H 1.08993 * 109.47239 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47322 * 239.99472 * 2 1 3 33 33 H 1.09002 * 109.47169 * 119.99162 * 2 1 3 34 34 H 1.08002 * 119.40889 * 179.67916 * 6 5 4 35 35 H 1.07999 * 120.26802 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.46631 * 270.02182 * 9 8 7 37 37 H 1.08998 * 109.47070 * 30.01542 * 9 8 7 38 38 H 1.08992 * 109.47660 * 150.02592 * 9 8 7 39 39 H 1.08997 * 113.85873 * 42.32192 * 14 13 11 40 40 H 1.09005 * 113.96416 * 270.66897 * 14 13 11 41 41 H 1.08998 * 113.85229 * 89.34587 * 16 13 11 42 42 H 1.09003 * 113.85792 * 317.67008 * 16 13 11 43 43 H 1.08999 * 110.74128 * 146.13290 * 17 15 14 44 44 H 1.09004 * 110.87990 * 22.69324 * 17 15 14 45 45 H 1.09002 * 109.86948 * 219.87830 * 18 17 15 46 46 H 1.08999 * 109.86727 * 98.90432 * 18 17 15 47 47 H 0.97000 * 119.99735 * 179.97438 * 23 22 20 48 48 H 1.08992 * 110.40138 * 141.24798 * 28 19 18 49 49 H 1.09001 * 110.40009 * 263.54912 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4733 -0.0051 6 6 5.4635 0.6003 0.0014 7 6 6.0625 1.8474 0.0074 8 6 5.2714 2.9822 0.0070 9 6 5.8913 4.3558 0.0140 10 6 3.8806 2.8229 0.0011 11 6 2.9901 3.9990 -0.0001 12 8 2.6273 4.4858 -1.0535 13 7 2.5786 4.5339 1.1666 14 6 1.7119 5.6751 1.5318 15 6 1.5008 4.9411 2.8504 16 6 2.8135 4.2123 2.5909 17 6 0.2397 4.0650 2.9481 18 6 -0.7742 5.0074 3.6366 19 7 -0.0057 6.0592 4.3208 20 6 -0.5389 7.1011 5.0316 21 1 0.1120 7.8251 5.4990 22 6 -1.9161 7.2268 5.1514 23 7 -2.7095 6.3442 4.5823 24 14 -2.6434 8.6477 6.1217 25 1 -1.5470 9.4931 6.6586 26 1 -3.5070 9.4643 5.2314 27 1 -3.4547 8.1156 7.2459 28 6 1.4352 5.8074 4.1146 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 6.0820 -0.2851 0.0016 35 1 7.1390 1.9342 0.0122 36 1 6.0362 4.6837 1.0434 37 1 6.8542 4.3224 -0.4957 38 1 5.2318 5.0547 -0.5004 39 1 0.8110 5.7568 0.9236 40 1 2.2445 6.6206 1.6341 41 1 3.6851 4.7092 3.0170 42 1 2.7771 3.1460 2.8140 43 1 0.4279 3.1847 3.5628 44 1 -0.1114 3.7774 1.9571 45 1 -1.3654 4.4490 4.3623 46 1 -1.4304 5.4545 2.8899 47 1 -3.6719 6.4318 4.6663 48 1 1.9666 6.7464 3.9597 49 1 1.8530 5.2713 4.9668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479759545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:39 Heat of formation + Delta-G solvation = 28.671033 kcal Electronic energy + Delta-G solvation = -31264.716021 eV Core-core repulsion = 27194.423989 eV Total energy + Delta-G solvation = -4070.292032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20252 -40.21548 -38.45211 -37.94172 -35.56336 -34.12190 -32.40235 -32.08907 -30.46163 -29.37982 -28.67591 -28.20187 -26.28882 -25.75037 -24.22435 -23.74049 -23.35564 -21.81184 -20.28670 -19.65901 -18.34432 -18.25627 -17.41883 -17.16179 -16.69029 -16.53179 -15.98900 -15.41579 -15.11587 -14.76373 -14.46233 -14.36294 -14.26193 -13.72385 -13.65606 -13.45506 -13.09798 -13.07480 -12.86982 -12.68384 -12.39234 -12.38117 -12.32665 -12.10596 -11.90063 -11.77522 -11.66044 -11.07139 -10.93445 -10.91185 -10.72913 -10.50377 -10.27281 -10.08787 -10.02902 -9.88050 -9.78525 -9.68411 -9.45067 -8.73396 -8.59717 -8.50466 -6.83373 -5.70916 -3.04675 0.68436 0.97580 2.63328 2.77625 2.90287 3.40164 3.42463 3.45586 3.48169 3.98107 4.36136 4.40208 4.47397 4.63223 4.69942 4.79712 4.87702 4.93270 5.00225 5.10795 5.18684 5.21912 5.26071 5.27110 5.49236 5.50157 5.54204 5.55508 5.57062 5.68021 5.69352 5.72534 5.84311 5.88665 5.94479 5.97412 6.02382 6.15538 6.23061 6.24080 6.47529 6.56099 6.67307 6.70421 7.04053 7.52914 7.56476 7.63267 7.81724 7.83808 8.22331 8.25373 9.21793 9.81982 10.47525 11.40605 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.002954 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.037691 B = 9476.253696 C =10526.865111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.295 6.295 4 C 0.360 3.640 5 N -0.544 5.544 6 C 0.155 3.845 7 C -0.217 4.217 8 C 0.025 3.975 9 C -0.124 4.124 10 C -0.192 4.192 11 C 0.599 3.401 12 O -0.537 6.537 13 N -0.629 5.629 14 C 0.132 3.868 15 C -0.102 4.102 16 C 0.117 3.883 17 C -0.117 4.117 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.152 3.848 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.251 0.749 48 H 0.042 0.958 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.762 -12.817 -8.125 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 O -0.201 6.201 4 C 0.181 3.819 5 N -0.268 5.268 6 C -0.001 4.001 7 C -0.237 4.237 8 C 0.018 3.982 9 C -0.180 4.180 10 C -0.198 4.198 11 C 0.386 3.614 12 O -0.414 6.414 13 N -0.363 5.363 14 C 0.011 3.989 15 C -0.104 4.104 16 C -0.006 4.006 17 C -0.156 4.156 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.025 3.975 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 16.765 -13.189 -8.826 23.084 hybrid contribution 0.037 1.115 0.509 1.226 sum 16.801 -12.074 -8.317 22.299 Atomic orbital electron populations 1.21837 0.92585 1.02897 1.03969 1.22674 0.95199 0.80464 1.02357 1.86300 1.16115 1.31166 1.86484 1.19667 0.84467 0.88292 0.89493 1.67412 1.06596 1.32258 1.20578 1.22539 0.89125 0.97400 0.91033 1.21775 1.01315 0.92399 1.08260 1.20151 0.90397 0.97036 0.90660 1.20929 1.01447 0.92069 1.03561 1.19725 0.94072 0.92367 1.13654 1.17304 0.79128 0.82296 0.82651 1.90800 1.57230 1.62933 1.30462 1.50174 1.49201 1.32069 1.04866 1.22979 0.93421 0.89361 0.93115 1.22487 0.94703 0.97220 0.96004 1.23049 0.98118 1.00854 0.78614 1.22553 0.94650 0.97752 1.00612 1.21209 0.90688 0.87701 0.94926 1.44539 0.98866 1.28642 1.61059 1.19084 0.90216 1.01603 1.24693 0.90368 1.24800 0.96007 0.98847 1.00766 1.69976 1.02779 1.36005 1.48044 0.86059 0.79012 0.81537 0.79225 1.20522 1.21791 1.21814 1.21207 0.88296 0.95724 0.92283 0.91112 0.91517 0.90211 0.91627 0.91448 0.81987 0.83993 0.89672 0.90119 0.90495 0.89711 0.89538 0.89600 0.90478 0.92062 0.91871 0.93874 0.93502 0.93815 0.94011 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.07 0.77 6.03 37.16 0.22 1.00 16 3 O -0.29 -4.39 9.57 -17.96 -0.17 -4.56 16 4 C 0.36 5.12 7.51 -16.61 -0.12 5.00 16 5 N -0.54 -6.59 9.21 -12.98 -0.12 -6.71 16 6 C 0.16 1.39 11.17 -17.49 -0.20 1.20 16 7 C -0.22 -1.84 9.79 -39.50 -0.39 -2.22 16 8 C 0.03 0.28 5.95 -103.93 -0.62 -0.34 16 9 C -0.12 -1.11 9.69 36.01 0.35 -0.76 16 10 C -0.19 -2.74 5.39 -104.69 -0.56 -3.30 16 11 C 0.60 10.05 5.65 -12.47 -0.07 9.98 16 12 O -0.54 -10.97 17.83 5.29 0.09 -10.87 16 13 N -0.63 -9.75 3.62 -188.15 -0.68 -10.43 16 14 C 0.13 2.18 8.14 -3.60 -0.03 2.15 16 15 C -0.10 -1.69 0.99 -154.74 -0.15 -1.85 16 16 C 0.12 1.57 7.97 -3.61 -0.03 1.54 16 17 C -0.12 -2.17 6.35 -25.43 -0.16 -2.33 16 18 C 0.18 4.26 5.39 -2.85 -0.02 4.25 16 19 N -0.60 -14.86 3.41 -170.51 -0.58 -15.44 16 20 C -0.23 -6.18 10.28 -15.06 -0.15 -6.34 16 21 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.78 10.30 55.49 0.57 -26.21 16 24 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.15 2.89 6.66 -3.17 -0.02 2.87 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.08 0.86 7.19 -51.93 -0.37 0.48 16 39 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 40 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 46 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -34.12 403.50 -9.35 -43.47 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.85 Total: -1.54 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -1.66 Total: 9.36 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.81 Total: -58.80 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.08 Total: -15.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.12 -9.35 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479759545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.143 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds