Wall clock time and date at job start Wed Apr 1 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47314 * 2 1 4 4 C 1.35424 * 117.00288 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.79911 * 0.30861 * 4 3 2 6 6 C 1.31886 * 121.79975 * 180.31889 * 5 4 3 7 7 C 1.38354 * 121.18427 * 359.65194 * 6 5 4 8 8 C 1.38332 * 119.46073 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.82916 * 179.97438 * 8 7 6 10 10 C 1.39991 * 118.34913 * 0.02562 * 8 7 6 11 11 C 1.47521 * 120.59856 * 180.02562 * 10 8 7 12 12 O 1.21589 * 120.00143 * 89.99972 * 11 10 8 13 13 N 1.34783 * 119.99680 * 269.99867 * 11 10 8 14 14 C 1.47886 * 134.33900 * 180.02562 * 13 11 10 15 15 C 1.52376 * 85.59017 * 156.49434 * 14 13 11 16 16 C 1.47886 * 134.34022 * 359.97027 * 13 11 10 17 17 C 1.53876 * 116.28084 * 264.17806 * 15 14 13 18 18 C 1.54601 * 102.63063 * 264.38118 * 17 15 14 19 19 N 1.47136 * 107.47544 * 339.39360 * 18 17 15 20 20 C 1.36938 * 125.58219 * 178.97076 * 19 18 17 21 21 H 1.08003 * 120.00338 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00180 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47391 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46843 * 120.00694 * 24 22 20 27 27 H 1.48501 * 109.47147 * 239.99857 * 24 22 20 28 28 C 1.47720 * 108.83064 * 359.00447 * 19 18 17 29 29 H 1.08997 * 109.47322 * 300.00528 * 1 2 3 30 30 H 1.09008 * 109.46819 * 60.00220 * 1 2 3 31 31 H 1.08993 * 109.47239 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47322 * 239.99472 * 2 1 3 33 33 H 1.09002 * 109.47169 * 119.99162 * 2 1 3 34 34 H 1.08002 * 119.40889 * 179.67916 * 6 5 4 35 35 H 1.07999 * 120.26802 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.46631 * 270.02182 * 9 8 7 37 37 H 1.08998 * 109.47070 * 30.01542 * 9 8 7 38 38 H 1.08992 * 109.47660 * 150.02592 * 9 8 7 39 39 H 1.08997 * 113.85873 * 42.32192 * 14 13 11 40 40 H 1.09005 * 113.96416 * 270.66897 * 14 13 11 41 41 H 1.08998 * 113.85229 * 89.34587 * 16 13 11 42 42 H 1.09003 * 113.85792 * 317.67008 * 16 13 11 43 43 H 1.08999 * 110.74128 * 146.13290 * 17 15 14 44 44 H 1.09004 * 110.87990 * 22.69324 * 17 15 14 45 45 H 1.09002 * 109.86948 * 219.87830 * 18 17 15 46 46 H 1.08999 * 109.86727 * 98.90432 * 18 17 15 47 47 H 0.97000 * 119.99735 * 179.97438 * 23 22 20 48 48 H 1.08992 * 110.40138 * 141.24798 * 28 19 18 49 49 H 1.09001 * 110.40009 * 263.54912 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4733 -0.0051 6 6 5.4635 0.6003 0.0014 7 6 6.0625 1.8474 0.0074 8 6 5.2714 2.9822 0.0070 9 6 5.8913 4.3558 0.0140 10 6 3.8806 2.8229 0.0011 11 6 2.9901 3.9990 -0.0001 12 8 2.6273 4.4858 -1.0535 13 7 2.5786 4.5339 1.1666 14 6 1.7119 5.6751 1.5318 15 6 1.5008 4.9411 2.8504 16 6 2.8135 4.2123 2.5909 17 6 0.2397 4.0650 2.9481 18 6 -0.7742 5.0074 3.6366 19 7 -0.0057 6.0592 4.3208 20 6 -0.5389 7.1011 5.0316 21 1 0.1120 7.8251 5.4990 22 6 -1.9161 7.2268 5.1514 23 7 -2.7095 6.3442 4.5823 24 14 -2.6434 8.6477 6.1217 25 1 -1.5470 9.4931 6.6586 26 1 -3.5070 9.4643 5.2314 27 1 -3.4547 8.1156 7.2459 28 6 1.4352 5.8074 4.1146 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 6.0820 -0.2851 0.0016 35 1 7.1390 1.9342 0.0122 36 1 6.0362 4.6837 1.0434 37 1 6.8542 4.3224 -0.4957 38 1 5.2318 5.0547 -0.5004 39 1 0.8110 5.7568 0.9236 40 1 2.2445 6.6206 1.6341 41 1 3.6851 4.7092 3.0170 42 1 2.7771 3.1460 2.8140 43 1 0.4279 3.1847 3.5628 44 1 -0.1114 3.7774 1.9571 45 1 -1.3654 4.4490 4.3623 46 1 -1.4304 5.4545 2.8899 47 1 -3.6719 6.4318 4.6663 48 1 1.9666 6.7464 3.9597 49 1 1.8530 5.2713 4.9668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479759545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:37 Heat of formation + Delta-G solvation = 5.352641 kcal Electronic energy + Delta-G solvation = -31265.727182 eV Core-core repulsion = 27194.423989 eV Total energy + Delta-G solvation = -4071.303194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.22365 -41.41474 -39.56896 -39.08233 -37.25545 -34.94661 -34.07512 -33.17383 -31.55740 -30.96483 -30.08364 -29.06031 -27.57259 -27.32168 -25.66668 -24.66278 -24.54393 -22.65586 -22.14684 -20.85020 -19.78749 -19.13045 -18.65180 -18.43021 -18.10430 -17.58868 -17.19292 -16.73800 -16.51524 -16.18876 -15.79937 -15.57312 -15.25636 -15.13673 -14.73171 -14.37125 -14.20853 -14.14266 -13.95768 -13.78112 -13.72306 -13.56637 -13.43950 -13.32337 -13.20797 -12.92751 -12.85557 -12.81012 -12.52237 -12.40897 -11.99148 -11.97212 -11.81657 -11.77373 -11.72552 -11.36633 -11.21741 -10.69346 -10.66356 -10.54083 -9.79263 -9.57450 -8.86024 -7.81697 -5.16812 -0.13438 0.18555 1.41309 1.47991 1.48743 1.58903 1.70697 1.92211 2.51716 2.62490 3.12105 3.28400 3.41287 3.42216 3.58892 3.68348 3.80222 3.85274 4.02654 4.04532 4.10447 4.11190 4.17886 4.28092 4.37815 4.43094 4.46980 4.58115 4.58996 4.65262 4.66662 4.74337 4.77873 4.80687 4.83990 4.87574 4.91500 5.01287 5.05605 5.14019 5.16424 5.19647 5.22648 5.46512 5.50024 5.65824 5.78133 6.17104 6.21648 6.57958 6.74189 6.96640 7.12562 7.80587 8.44997 9.29064 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.002954 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.037691 B = 9476.253696 C =10526.865111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.326 6.326 4 C 0.339 3.661 5 N -0.555 5.555 6 C 0.157 3.843 7 C -0.200 4.200 8 C 0.022 3.978 9 C -0.121 4.121 10 C -0.223 4.223 11 C 0.600 3.400 12 O -0.588 6.588 13 N -0.627 5.627 14 C 0.127 3.873 15 C -0.095 4.095 16 C 0.136 3.864 17 C -0.101 4.101 18 C 0.192 3.808 19 N -0.626 5.626 20 C -0.233 4.233 21 H 0.089 0.911 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.976 3.024 25 H -0.261 1.261 26 H -0.297 1.297 27 H -0.295 1.295 28 C 0.151 3.849 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.204 0.796 35 H 0.185 0.815 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.007 0.993 46 H 0.004 0.996 47 H 0.244 0.756 48 H 0.056 0.944 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.108 -13.837 -7.229 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.007 4.007 3 O -0.233 6.233 4 C 0.161 3.839 5 N -0.280 5.280 6 C 0.001 3.999 7 C -0.219 4.219 8 C 0.014 3.986 9 C -0.178 4.178 10 C -0.229 4.229 11 C 0.390 3.610 12 O -0.469 6.469 13 N -0.360 5.360 14 C 0.005 3.995 15 C -0.097 4.097 16 C 0.014 3.986 17 C -0.140 4.140 18 C 0.066 3.934 19 N -0.353 5.353 20 C -0.362 4.362 21 H 0.107 0.893 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.225 1.225 27 H -0.222 1.222 28 C 0.026 3.974 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.221 0.779 35 H 0.202 0.798 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.169 -14.218 -7.900 26.696 hybrid contribution -1.215 1.382 0.210 1.852 sum 19.954 -12.836 -7.689 24.941 Atomic orbital electron populations 1.21859 0.92079 1.04300 1.02690 1.22799 0.95573 0.79513 1.02809 1.86261 1.17244 1.32858 1.86932 1.19804 0.84442 0.88842 0.90819 1.67485 1.07981 1.31454 1.21057 1.23357 0.88314 0.99386 0.88830 1.22223 1.03105 0.91002 1.05590 1.20511 0.89194 0.98926 0.90004 1.20986 1.01901 0.90309 1.04559 1.19694 0.95130 0.91073 1.16956 1.17756 0.78763 0.82565 0.81935 1.90755 1.59299 1.64650 1.32238 1.50181 1.48601 1.31488 1.05745 1.22982 0.93077 0.90764 0.92687 1.22336 0.95557 0.96874 0.94895 1.23133 0.97124 1.01512 0.76824 1.22319 0.94329 0.97449 0.99855 1.20862 0.91407 0.87982 0.93120 1.44834 1.01525 1.28182 1.60715 1.19528 0.90598 1.02121 1.23983 0.89311 1.25649 0.96716 1.01494 1.02442 1.70211 1.02391 1.37924 1.49844 0.85033 0.78292 0.78714 0.77452 1.18531 1.22488 1.22205 1.21405 0.85239 0.97048 0.93708 0.92435 0.92657 0.87449 0.91227 0.90746 0.77917 0.79751 0.88037 0.87198 0.93439 0.92669 0.87740 0.85825 0.89386 0.90215 0.92438 0.97473 0.97795 0.94686 0.92546 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 10.28 71.98 0.74 -2.36 16 2 C 0.07 1.53 6.03 71.98 0.43 1.96 16 3 O -0.33 -9.90 9.57 -87.19 -0.83 -10.74 16 4 C 0.34 9.42 7.51 85.13 0.64 10.05 16 5 N -0.56 -12.23 9.21 -308.00 -2.84 -15.07 16 6 C 0.16 2.16 11.17 84.71 0.95 3.11 16 7 C -0.20 -2.43 9.79 22.32 0.22 -2.21 16 8 C 0.02 0.41 5.95 -19.42 -0.12 0.29 16 9 C -0.12 -1.80 9.69 71.24 0.69 -1.11 16 10 C -0.22 -6.14 5.39 -19.91 -0.11 -6.24 16 11 C 0.60 20.39 5.65 86.69 0.49 20.88 16 12 O -0.59 -25.20 17.83 -4.00 -0.07 -25.27 16 13 N -0.63 -19.11 3.62 -867.43 -3.14 -22.25 16 14 C 0.13 4.20 8.14 85.91 0.70 4.89 16 15 C -0.10 -3.04 0.99 -52.08 -0.05 -3.10 16 16 C 0.14 3.28 7.97 85.90 0.68 3.96 16 17 C -0.10 -3.81 6.35 31.43 0.20 -3.61 16 18 C 0.19 9.56 5.39 86.80 0.47 10.03 16 19 N -0.63 -31.15 3.41 -693.36 -2.36 -33.51 16 20 C -0.23 -12.75 10.28 84.03 0.86 -11.89 16 21 H 0.09 4.56 7.83 -2.91 -0.02 4.53 16 22 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 23 N -0.95 -58.18 10.30 21.65 0.22 -57.96 16 24 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 C 0.15 5.51 6.66 86.28 0.57 6.09 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.05 1.01 7.19 -2.39 -0.02 0.99 16 39 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.10 3.07 8.05 -2.38 -0.02 3.05 16 41 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 43 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.06 2.22 8.07 -2.38 -0.02 2.21 16 45 H 0.01 0.40 7.49 -2.39 -0.02 0.38 16 46 H 0.00 0.22 7.38 -2.39 -0.02 0.20 16 47 H 0.24 14.55 8.31 -92.71 -0.77 13.77 16 48 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -80.67 403.50 1.78 -78.88 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.94 Total: 10.88 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 7.84 Total: 27.21 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -8.11 Total: -128.79 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.91 Total: -36.01 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -80.67 1.78 -78.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479759545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.236 kcal (2) G-P(sol) polarization free energy of solvation -80.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds