Wall clock time and date at job start Wed Apr 1 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 5 5 O 1.21280 * 120.00330 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99545 * 0.02562 * 4 3 2 7 7 N 1.46498 * 109.46851 * 179.97438 * 6 4 3 8 8 C 1.34782 * 119.99973 * 179.97438 * 7 6 4 9 9 O 1.21555 * 119.99959 * 0.02562 * 8 7 6 10 10 C 1.47842 * 119.99990 * 179.97438 * 8 7 6 11 11 C 1.39571 * 120.14414 * 359.73343 * 10 8 7 12 12 C 1.37958 * 119.85067 * 179.74169 * 11 10 8 13 13 C 1.38358 * 120.14538 * 0.53040 * 12 11 10 14 14 C 1.38357 * 120.29435 * 359.73923 * 13 12 11 15 15 C 1.37957 * 120.14135 * 359.97438 * 14 13 12 16 16 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 17 17 H 1.09004 * 110.63680 * 359.30350 * 16 3 2 18 18 C 1.55159 * 110.72275 * 122.43498 * 16 3 2 19 19 C 1.55125 * 101.48468 * 153.73986 * 18 16 3 20 20 N 1.47422 * 104.94246 * 323.22382 * 19 18 16 21 21 C 1.36932 * 125.64852 * 204.03856 * 20 19 18 22 22 H 1.08007 * 120.00061 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00399 * 359.96050 * 21 20 19 24 24 N 1.31621 * 119.99461 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00381 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47518 * 89.99986 * 25 23 21 27 27 H 1.48507 * 109.46987 * 209.99919 * 25 23 21 28 28 H 1.48496 * 109.47140 * 329.99483 * 25 23 21 29 29 C 1.47030 * 108.70505 * 24.00601 * 20 19 18 30 30 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 35 35 H 1.08998 * 109.46882 * 299.99456 * 6 4 3 36 36 H 1.09003 * 109.47544 * 59.99294 * 6 4 3 37 37 H 0.96994 * 120.00034 * 359.97438 * 7 6 4 38 38 H 1.07994 * 120.07622 * 359.97438 * 11 10 8 39 39 H 1.08001 * 119.93112 * 180.27546 * 12 11 10 40 40 H 1.08006 * 119.85662 * 179.76492 * 13 12 11 41 41 H 1.07994 * 119.93096 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.07547 * 180.02562 * 15 14 13 43 43 H 1.08998 * 111.00492 * 271.95066 * 18 16 3 44 44 H 1.09002 * 111.00057 * 35.79921 * 18 16 3 45 45 H 1.09000 * 110.41791 * 204.30038 * 19 18 16 46 46 H 1.08999 * 110.29797 * 82.08884 * 19 18 16 47 47 H 0.96995 * 120.00028 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.87952 * 239.51964 * 29 20 19 49 49 H 1.08999 * 109.88467 * 118.35391 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1673 5 8 2.6468 3.1602 1.1673 6 6 1.9923 1.3059 2.4723 7 7 2.3101 2.2032 3.5858 8 6 2.1603 1.7796 4.8566 9 8 1.7620 0.6529 5.0786 10 6 2.4815 2.6850 5.9803 11 6 2.9454 3.9771 5.7288 12 6 3.2382 4.8188 6.7819 13 6 3.0835 4.3807 8.0852 14 6 2.6294 3.0992 8.3415 15 6 2.3274 2.2495 7.2974 16 6 2.2625 2.0720 -1.2686 17 1 2.0438 1.4162 -2.1114 18 6 1.4240 3.3746 -1.3548 19 6 2.2827 4.2314 -2.3216 20 7 3.6793 3.9118 -1.9742 21 6 4.7630 4.7168 -2.2038 22 1 5.7499 4.3905 -1.9102 23 6 4.5934 5.9519 -2.8141 24 7 3.3908 6.3491 -3.1726 25 14 6.0718 7.0496 -3.1280 26 1 6.6396 6.7448 -4.4658 27 1 5.6502 8.4729 -3.0818 28 1 7.1007 6.8042 -2.0858 29 6 3.7158 2.5860 -1.3396 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.9444 1.0114 2.5302 36 1 2.6227 0.4185 2.5299 37 1 2.6282 3.1022 3.4086 38 1 3.0712 4.3187 4.7120 39 1 3.5930 5.8204 6.5888 40 1 3.3178 5.0423 8.9062 41 1 2.5112 2.7632 9.3610 42 1 1.9727 1.2495 7.4987 43 1 0.4375 3.1772 -1.7744 44 1 1.3430 3.8523 -0.3784 45 1 2.0864 5.2922 -2.1660 46 1 2.0765 3.9557 -3.3558 47 1 3.2722 7.2120 -3.5994 48 1 4.1298 2.6674 -0.3345 49 1 4.3211 1.9051 -1.9380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567944467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:07 Heat of formation + Delta-G solvation = -24.355341 kcal Electronic energy + Delta-G solvation = -30414.421757 eV Core-core repulsion = 26341.830328 eV Total energy + Delta-G solvation = -4072.591428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.76910 -40.98758 -39.27155 -38.52180 -36.86784 -35.71182 -34.30189 -32.43712 -31.89716 -31.63050 -30.80006 -29.62537 -28.08937 -26.35841 -24.82407 -24.12669 -23.41570 -22.45271 -22.08424 -21.53270 -20.22985 -19.11713 -18.86371 -17.89318 -17.74412 -17.01657 -16.89159 -16.84233 -16.54138 -16.00206 -15.83347 -15.69321 -15.43848 -15.15970 -14.78987 -14.67715 -14.41854 -14.38651 -14.19836 -14.05146 -13.85903 -13.48729 -13.42571 -13.11850 -12.99974 -12.75987 -12.71335 -12.63177 -12.35333 -12.15184 -12.04932 -12.04334 -12.02825 -11.81121 -11.37787 -11.21091 -10.73796 -10.64905 -10.40461 -9.98034 -9.93048 -9.67053 -8.85174 -7.76292 -5.19634 -0.18449 0.38884 1.43917 1.46815 1.50068 1.55264 1.62444 1.76937 2.21593 2.50504 2.87076 3.28209 3.34454 3.61138 3.75303 3.88041 3.90468 3.99671 3.99967 4.09056 4.19078 4.22656 4.25914 4.28925 4.43695 4.44585 4.50822 4.57726 4.68388 4.73569 4.83126 4.85292 4.94152 5.03038 5.03306 5.03774 5.12136 5.13960 5.32405 5.41612 5.42460 5.43578 5.48815 5.62585 5.72893 5.80834 5.92543 6.30446 6.31285 6.37428 6.97854 7.10121 7.11881 7.79532 8.43266 9.25488 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.002990 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.720588 B = 9363.118548 C =11785.262822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.499 3.501 5 O -0.554 6.554 6 C 0.109 3.891 7 N -0.714 5.714 8 C 0.562 3.438 9 O -0.570 6.570 10 C -0.158 4.158 11 C -0.095 4.095 12 C -0.133 4.133 13 C -0.088 4.088 14 C -0.128 4.128 15 C -0.072 4.072 16 C 0.153 3.847 17 H 0.120 0.880 18 C -0.137 4.137 19 C 0.161 3.839 20 N -0.617 5.617 21 C -0.235 4.235 22 H 0.074 0.926 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.981 3.019 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.273 1.273 29 C 0.129 3.871 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.412 0.588 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.133 0.867 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.066 0.934 46 H -0.006 1.006 47 H 0.246 0.754 48 H 0.022 0.978 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -12.657 19.365 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.326 5.326 4 C 0.287 3.713 5 O -0.432 6.432 6 C -0.018 4.018 7 N -0.368 5.368 8 C 0.351 3.649 9 O -0.451 6.451 10 C -0.161 4.161 11 C -0.113 4.113 12 C -0.151 4.151 13 C -0.106 4.106 14 C -0.146 4.146 15 C -0.091 4.091 16 C 0.049 3.951 17 H 0.138 0.862 18 C -0.177 4.177 19 C 0.036 3.964 20 N -0.343 5.343 21 C -0.364 4.364 22 H 0.091 0.909 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.809 3.191 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.198 1.198 29 C 0.003 3.997 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.251 0.749 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.175 0.825 42 H 0.151 0.849 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.012 0.988 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.097 -12.700 19.386 23.965 hybrid contribution 0.877 1.265 -0.868 1.767 sum -5.221 -11.436 18.518 22.382 Atomic orbital electron populations 1.22201 0.94724 1.03623 1.02080 1.22021 0.95411 0.79831 1.05479 1.47976 1.64948 1.15417 1.04253 1.20840 0.77537 0.86634 0.86296 1.90810 1.45909 1.19247 1.87278 1.21225 1.04368 0.93323 0.82891 1.45746 1.67605 1.18652 1.04806 1.18534 0.76805 0.86724 0.82833 1.90725 1.48090 1.20991 1.85249 1.19897 1.07154 0.95212 0.93815 1.21536 0.96574 0.92670 1.00563 1.21471 1.00222 1.00752 0.92657 1.21814 0.95249 0.96162 0.97380 1.21508 0.99188 0.93884 0.99983 1.21420 0.96164 1.00551 0.90951 1.21956 0.93790 0.93653 0.85669 0.86224 1.23191 0.98188 0.96053 1.00235 1.21627 0.82484 0.99474 0.92842 1.44556 1.03948 1.16122 1.69688 1.19382 0.87324 0.97638 1.32039 0.90861 1.25621 0.99745 0.99166 1.01534 1.70062 1.21227 1.21084 1.47532 0.85040 0.78404 0.77690 0.77967 1.21011 1.21811 1.19829 1.21629 0.95880 0.86678 0.95531 0.93130 0.88970 0.92774 0.88237 0.88084 0.86861 0.86910 0.74933 0.85641 0.83490 0.82411 0.82461 0.84864 0.89896 0.92282 0.91629 0.98771 0.94389 0.96025 0.95998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 71.98 0.74 -1.58 16 2 C 0.09 1.46 5.92 86.38 0.51 1.97 16 3 N -0.59 -15.45 2.54 -791.25 -2.01 -17.46 16 4 C 0.50 14.82 6.84 87.66 0.60 15.42 16 5 O -0.55 -22.08 12.03 -3.03 -0.04 -22.11 16 6 C 0.11 2.52 4.71 85.63 0.40 2.92 16 7 N -0.71 -18.42 5.48 -469.70 -2.57 -21.00 16 8 C 0.56 14.99 7.77 86.78 0.67 15.67 16 9 O -0.57 -17.49 16.35 -3.89 -0.06 -17.55 16 10 C -0.16 -3.65 5.87 -20.09 -0.12 -3.77 16 11 C -0.09 -1.97 9.54 22.53 0.21 -1.75 16 12 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 13 C -0.09 -1.14 10.04 22.33 0.22 -0.91 16 14 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 15 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 16 C 0.15 5.14 3.43 46.18 0.16 5.30 16 17 H 0.12 3.35 7.86 -2.39 -0.02 3.33 16 18 C -0.14 -5.44 6.44 32.06 0.21 -5.24 16 19 C 0.16 8.35 5.89 86.93 0.51 8.86 16 20 N -0.62 -33.74 3.40 -691.55 -2.35 -36.09 16 21 C -0.23 -13.95 10.27 84.03 0.86 -13.09 16 22 H 0.07 4.24 7.83 -2.91 -0.02 4.21 16 23 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 24 N -0.95 -58.69 10.09 21.65 0.22 -58.47 16 25 Si 0.98 47.54 29.55 68.60 2.03 49.57 16 26 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 29 C 0.13 5.68 6.48 86.73 0.56 6.24 16 30 H 0.05 0.77 7.22 -2.39 -0.02 0.75 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.10 1.18 6.44 -2.39 -0.02 1.16 16 34 H 0.10 1.28 7.94 -2.39 -0.02 1.26 16 35 H 0.11 2.29 7.19 -2.39 -0.02 2.27 16 36 H 0.11 2.27 7.40 -2.39 -0.02 2.25 16 37 H 0.41 11.15 5.47 -92.71 -0.51 10.64 16 38 H 0.13 2.64 6.41 -2.91 -0.02 2.62 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.13 2.58 7.65 -2.91 -0.02 2.56 16 43 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.06 2.60 6.03 -2.39 -0.01 2.58 16 45 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.02 1.03 6.07 -2.39 -0.01 1.02 16 49 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -80.10 391.92 2.36 -77.75 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.46 Total: 23.60 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.68 Total: 21.76 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -6.71 Total: -133.02 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.10 Total: -39.66 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -80.10 2.36 -77.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567944467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.393 kcal (2) G-P(sol) polarization free energy of solvation -80.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds