Wall clock time and date at job start Wed Apr 1 2020 04:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46931 * 2 1 4 4 C 1.34774 * 120.00419 * 275.18865 * 3 2 1 5 5 O 1.21274 * 120.00312 * 185.21595 * 4 3 2 6 6 C 1.50710 * 119.99649 * 5.21615 * 4 3 2 7 7 N 1.46498 * 109.46871 * 179.97438 * 6 4 3 8 8 C 1.34780 * 119.99874 * 179.97438 * 7 6 4 9 9 O 1.21547 * 119.99605 * 0.02562 * 8 7 6 10 10 C 1.47842 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.39576 * 120.14632 * 359.73006 * 10 8 7 12 12 C 1.37962 * 119.85149 * 179.74402 * 11 10 8 13 13 C 1.38355 * 120.14597 * 0.53378 * 12 11 10 14 14 C 1.38367 * 120.28957 * 359.73722 * 13 12 11 15 15 C 1.37948 * 120.14893 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99917 * 95.19014 * 3 2 1 17 17 H 1.09001 * 110.91438 * 190.41797 * 16 3 2 18 18 C 1.55150 * 111.00378 * 66.51412 * 16 3 2 19 19 C 1.54322 * 102.94369 * 277.42688 * 18 16 3 20 20 N 1.47017 * 107.27225 * 337.81196 * 19 18 16 21 21 C 1.36942 * 125.64921 * 178.98632 * 20 19 18 22 22 H 1.08003 * 119.99606 * 185.51577 * 21 20 19 23 23 C 1.38805 * 120.00060 * 5.51774 * 21 20 19 24 24 N 1.31622 * 119.99682 * 5.90467 * 23 21 20 25 25 Si 1.86798 * 119.99971 * 185.90556 * 23 21 20 26 26 H 1.48500 * 109.47373 * 84.99951 * 25 23 21 27 27 H 1.48505 * 109.46866 * 204.99233 * 25 23 21 28 28 H 1.48496 * 109.47254 * 324.99249 * 25 23 21 29 29 C 1.47429 * 108.70539 * 358.93557 * 20 19 18 30 30 H 1.08997 * 109.46683 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47073 * 299.99408 * 1 2 3 32 32 H 1.08996 * 109.47049 * 59.99622 * 1 2 3 33 33 H 1.08998 * 109.47073 * 240.00592 * 2 1 3 34 34 H 1.08996 * 109.47528 * 120.00148 * 2 1 3 35 35 H 1.08995 * 109.46803 * 300.00081 * 6 4 3 36 36 H 1.08997 * 109.46935 * 59.99919 * 6 4 3 37 37 H 0.97001 * 119.99992 * 0.02562 * 7 6 4 38 38 H 1.07997 * 120.07502 * 359.97438 * 11 10 8 39 39 H 1.08004 * 119.92308 * 180.26884 * 12 11 10 40 40 H 1.07995 * 119.85472 * 179.76434 * 13 12 11 41 41 H 1.07999 * 119.92075 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.07958 * 180.02562 * 15 14 13 43 43 H 1.09001 * 110.72083 * 35.79076 * 18 16 3 44 44 H 1.09005 * 110.71789 * 159.06331 * 18 16 3 45 45 H 1.09010 * 109.88157 * 97.22448 * 19 18 16 46 46 H 1.08996 * 109.88619 * 218.23466 * 19 18 16 47 47 H 0.97007 * 119.99669 * 179.97438 * 24 23 21 48 48 H 1.08996 * 110.36739 * 265.29978 * 29 20 19 49 49 H 1.08994 * 110.36996 * 142.96482 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1434 2.0518 -1.1623 5 8 2.6359 3.1601 -1.1731 6 6 1.6714 1.4245 -2.4488 7 7 1.9157 2.3469 -3.5603 8 6 1.5719 1.9958 -4.8154 9 8 1.0588 0.9141 -5.0248 10 6 1.8190 2.9265 -5.9372 11 6 2.4029 4.1718 -5.6993 12 6 2.6355 5.0334 -6.7514 13 6 2.2813 4.6699 -8.0385 14 6 1.6970 3.4392 -8.2804 15 6 1.4643 2.5659 -7.2382 16 6 2.3707 2.0336 1.2636 17 1 2.5377 3.1008 1.1172 18 6 3.6098 1.3603 1.9105 19 6 3.0008 0.1449 2.6410 20 7 1.5785 0.4399 2.8682 21 6 0.6768 -0.3952 3.4723 22 1 -0.3676 -0.1233 3.5131 23 6 1.1052 -1.5909 4.0322 24 7 2.3906 -1.8689 4.0863 25 14 -0.1425 -2.8054 4.7086 26 1 -0.6438 -3.6655 3.6068 27 1 0.5025 -3.6528 5.7436 28 1 -1.2779 -2.0635 5.3133 29 6 1.2840 1.7841 2.3391 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2149 0.4955 -2.6208 36 1 0.6042 1.2136 -2.3799 37 1 2.3255 3.2100 -3.3932 38 1 2.6753 4.4587 -4.6944 39 1 3.0913 5.9954 -6.5692 40 1 2.4621 5.3496 -8.8580 41 1 1.4233 3.1615 -9.2875 42 1 1.0085 1.6055 -7.4283 43 1 4.3159 1.0365 1.1458 44 1 4.0896 2.0355 2.6190 45 1 3.1001 -0.7473 2.0226 46 1 3.5072 -0.0067 3.5941 47 1 2.6900 -2.7044 4.4779 48 1 1.3573 2.5283 3.1321 49 1 0.2920 1.8053 1.8881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567944468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:14 Heat of formation + Delta-G solvation = -0.602136 kcal Electronic energy + Delta-G solvation = -30489.206826 eV Core-core repulsion = 26417.645414 eV Total energy + Delta-G solvation = -4071.561412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63872 -39.92924 -38.48097 -37.62559 -34.75883 -34.65443 -32.50219 -31.65787 -31.26683 -30.37275 -28.98183 -28.32708 -27.05388 -24.52228 -23.96851 -22.91902 -22.66669 -20.96155 -20.62054 -20.15041 -19.01777 -18.22048 -17.14184 -16.97306 -16.44783 -16.16635 -15.97347 -15.59066 -15.07243 -14.76534 -14.70548 -14.66421 -14.07985 -13.89092 -13.83640 -13.60851 -13.35364 -13.09760 -12.92706 -12.65020 -12.30813 -12.13619 -12.01940 -11.99977 -11.90791 -11.44644 -11.38365 -11.00145 -10.97535 -10.87636 -10.54321 -10.23901 -10.20456 -10.18476 -9.95945 -9.69094 -9.49981 -9.41455 -9.34991 -9.17894 -8.74007 -8.33110 -6.90865 -5.78736 -3.14432 0.53027 1.01109 2.59745 2.66479 2.72471 3.34819 3.37281 3.41170 3.42524 3.57614 4.39566 4.43061 4.45784 4.54190 4.58287 4.79121 5.01544 5.12872 5.20150 5.23733 5.30599 5.38984 5.41341 5.44512 5.51104 5.61433 5.62128 5.78357 5.80392 5.92043 5.96016 6.03567 6.07486 6.09041 6.11359 6.22983 6.26019 6.38215 6.46503 6.51594 6.55106 6.65297 6.83791 6.98334 7.30505 7.37791 7.55661 7.66113 7.75454 7.99246 8.16043 8.22372 9.12404 9.72814 10.38129 11.31358 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.002243 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.218514 B =12479.744889 C =13241.324972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 N -0.577 5.577 4 C 0.507 3.493 5 O -0.555 6.555 6 C 0.099 3.901 7 N -0.712 5.712 8 C 0.559 3.441 9 O -0.538 6.538 10 C -0.132 4.132 11 C -0.084 4.084 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.130 4.130 15 C -0.060 4.060 16 C 0.123 3.877 17 H 0.098 0.902 18 C -0.155 4.155 19 C 0.170 3.830 20 N -0.600 5.600 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.123 3.877 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.410 0.590 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.059 0.941 47 H 0.253 0.747 48 H 0.031 0.969 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 11.331 -20.189 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.038 4.038 3 N -0.307 5.307 4 C 0.295 3.705 5 O -0.435 6.435 6 C -0.027 4.027 7 N -0.367 5.367 8 C 0.346 3.654 9 O -0.416 6.416 10 C -0.135 4.135 11 C -0.103 4.103 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.148 4.148 15 C -0.079 4.079 16 C 0.019 3.981 17 H 0.116 0.884 18 C -0.194 4.194 19 C 0.046 3.954 20 N -0.327 5.327 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.739 3.261 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.003 4.003 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.249 0.751 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.773 10.898 -20.148 22.920 hybrid contribution -0.419 -0.396 0.592 0.826 sum 0.354 10.503 -19.556 22.201 Atomic orbital electron populations 1.22195 0.95686 1.02483 1.01609 1.22125 0.95127 0.81335 1.05184 1.47828 1.62897 1.14578 1.05418 1.20381 0.78910 0.85784 0.85457 1.90629 1.45872 1.20460 1.86540 1.21242 1.03395 0.93559 0.84535 1.45652 1.63530 1.21602 1.05935 1.18254 0.78211 0.86491 0.82435 1.90785 1.43402 1.22961 1.84404 1.19922 1.04223 0.95333 0.94059 1.21428 0.96332 0.92762 0.99799 1.21142 1.00784 1.00015 0.92622 1.21402 0.96582 0.96370 0.97065 1.21176 1.00106 0.94249 0.99259 1.21309 0.95832 0.99780 0.90952 1.22303 0.96374 0.96839 0.82559 0.88396 1.23257 0.96592 1.00094 0.99450 1.21255 0.84230 0.91702 0.98215 1.44540 1.06444 1.12769 1.68924 1.18957 0.88950 0.98146 1.29373 0.90515 1.24783 0.96072 0.98667 1.00706 1.69951 1.12061 1.24693 1.49933 0.86188 0.80194 0.81248 0.78427 1.21517 1.21794 1.20808 1.21950 0.96026 0.89292 0.93064 0.91631 0.90773 0.94277 0.92146 0.85103 0.88287 0.87929 0.75058 0.85273 0.85268 0.85564 0.85276 0.84548 0.91929 0.91217 0.94571 0.92337 0.93682 0.95179 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.99 37.16 0.37 -2.13 16 2 C 0.08 1.36 5.04 -4.04 -0.02 1.33 16 3 N -0.58 -9.21 2.52 -163.67 -0.41 -9.62 16 4 C 0.51 7.71 7.70 -10.98 -0.08 7.63 16 5 O -0.56 -9.42 15.10 5.56 0.08 -9.33 16 6 C 0.10 1.31 4.83 -5.19 -0.03 1.29 16 7 N -0.71 -8.85 5.48 -62.43 -0.34 -9.19 16 8 C 0.56 7.33 7.77 -12.33 -0.10 7.24 16 9 O -0.54 -8.62 16.35 5.32 0.09 -8.53 16 10 C -0.13 -1.43 5.87 -104.97 -0.62 -2.04 16 11 C -0.08 -0.75 9.54 -39.18 -0.37 -1.12 16 12 C -0.13 -0.92 10.03 -39.64 -0.40 -1.32 16 13 C -0.10 -0.64 10.04 -39.49 -0.40 -1.04 16 14 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 15 C -0.06 -0.58 9.60 -39.19 -0.38 -0.96 16 16 C 0.12 2.11 3.61 -65.78 -0.24 1.88 16 17 H 0.10 1.65 7.12 -51.93 -0.37 1.28 16 18 C -0.15 -2.76 6.56 -24.90 -0.16 -2.93 16 19 C 0.17 3.75 4.34 -3.07 -0.01 3.74 16 20 N -0.60 -13.56 2.19 -170.07 -0.37 -13.93 16 21 C -0.23 -5.69 10.27 -15.06 -0.15 -5.85 16 22 H 0.08 1.90 7.84 -52.48 -0.41 1.49 16 23 C -0.01 -0.15 5.46 -17.43 -0.10 -0.24 16 24 N -0.92 -25.26 10.43 55.49 0.58 -24.68 16 25 Si 0.91 21.02 29.56 -169.99 -5.02 16.00 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 C 0.12 2.35 6.06 -2.52 -0.02 2.34 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.29 5.63 -51.93 -0.29 0.99 16 32 H 0.04 0.53 6.31 -51.93 -0.33 0.20 16 33 H 0.06 0.85 6.71 -51.93 -0.35 0.50 16 34 H 0.13 2.58 3.73 -51.93 -0.19 2.38 16 35 H 0.10 1.27 7.28 -51.93 -0.38 0.89 16 36 H 0.10 1.33 6.35 -51.93 -0.33 1.00 16 37 H 0.41 4.73 5.47 -40.82 -0.22 4.51 16 38 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.04 0.86 6.27 -51.92 -0.33 0.54 16 46 H 0.06 1.48 7.06 -51.93 -0.37 1.12 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.05 0.92 6.00 -51.93 -0.31 0.61 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -30.11 384.56 -9.41 -39.52 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.71 Total: 7.51 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.09 Total: 6.47 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.55 Total: -57.43 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.17 Total: -17.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.11 -9.41 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567944468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.917 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds