Wall clock time and date at job start Wed Apr 1 2020 04:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46931 * 2 1 4 4 C 1.34774 * 120.00419 * 275.18865 * 3 2 1 5 5 O 1.21274 * 120.00312 * 185.21595 * 4 3 2 6 6 C 1.50710 * 119.99649 * 5.21615 * 4 3 2 7 7 N 1.46498 * 109.46871 * 179.97438 * 6 4 3 8 8 C 1.34780 * 119.99874 * 179.97438 * 7 6 4 9 9 O 1.21547 * 119.99605 * 0.02562 * 8 7 6 10 10 C 1.47842 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.39576 * 120.14632 * 359.73006 * 10 8 7 12 12 C 1.37962 * 119.85149 * 179.74402 * 11 10 8 13 13 C 1.38355 * 120.14597 * 0.53378 * 12 11 10 14 14 C 1.38367 * 120.28957 * 359.73722 * 13 12 11 15 15 C 1.37948 * 120.14893 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99917 * 95.19014 * 3 2 1 17 17 H 1.09001 * 110.91438 * 190.41797 * 16 3 2 18 18 C 1.55150 * 111.00378 * 66.51412 * 16 3 2 19 19 C 1.54322 * 102.94369 * 277.42688 * 18 16 3 20 20 N 1.47017 * 107.27225 * 337.81196 * 19 18 16 21 21 C 1.36942 * 125.64921 * 178.98632 * 20 19 18 22 22 H 1.08003 * 119.99606 * 185.51577 * 21 20 19 23 23 C 1.38805 * 120.00060 * 5.51774 * 21 20 19 24 24 N 1.31622 * 119.99682 * 5.90467 * 23 21 20 25 25 Si 1.86798 * 119.99971 * 185.90556 * 23 21 20 26 26 H 1.48500 * 109.47373 * 84.99951 * 25 23 21 27 27 H 1.48505 * 109.46866 * 204.99233 * 25 23 21 28 28 H 1.48496 * 109.47254 * 324.99249 * 25 23 21 29 29 C 1.47429 * 108.70539 * 358.93557 * 20 19 18 30 30 H 1.08997 * 109.46683 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47073 * 299.99408 * 1 2 3 32 32 H 1.08996 * 109.47049 * 59.99622 * 1 2 3 33 33 H 1.08998 * 109.47073 * 240.00592 * 2 1 3 34 34 H 1.08996 * 109.47528 * 120.00148 * 2 1 3 35 35 H 1.08995 * 109.46803 * 300.00081 * 6 4 3 36 36 H 1.08997 * 109.46935 * 59.99919 * 6 4 3 37 37 H 0.97001 * 119.99992 * 0.02562 * 7 6 4 38 38 H 1.07997 * 120.07502 * 359.97438 * 11 10 8 39 39 H 1.08004 * 119.92308 * 180.26884 * 12 11 10 40 40 H 1.07995 * 119.85472 * 179.76434 * 13 12 11 41 41 H 1.07999 * 119.92075 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.07958 * 180.02562 * 15 14 13 43 43 H 1.09001 * 110.72083 * 35.79076 * 18 16 3 44 44 H 1.09005 * 110.71789 * 159.06331 * 18 16 3 45 45 H 1.09010 * 109.88157 * 97.22448 * 19 18 16 46 46 H 1.08996 * 109.88619 * 218.23466 * 19 18 16 47 47 H 0.97007 * 119.99669 * 179.97438 * 24 23 21 48 48 H 1.08996 * 110.36739 * 265.29978 * 29 20 19 49 49 H 1.08994 * 110.36996 * 142.96482 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1434 2.0518 -1.1623 5 8 2.6359 3.1601 -1.1731 6 6 1.6714 1.4245 -2.4488 7 7 1.9157 2.3469 -3.5603 8 6 1.5719 1.9958 -4.8154 9 8 1.0588 0.9141 -5.0248 10 6 1.8190 2.9265 -5.9372 11 6 2.4029 4.1718 -5.6993 12 6 2.6355 5.0334 -6.7514 13 6 2.2813 4.6699 -8.0385 14 6 1.6970 3.4392 -8.2804 15 6 1.4643 2.5659 -7.2382 16 6 2.3707 2.0336 1.2636 17 1 2.5377 3.1008 1.1172 18 6 3.6098 1.3603 1.9105 19 6 3.0008 0.1449 2.6410 20 7 1.5785 0.4399 2.8682 21 6 0.6768 -0.3952 3.4723 22 1 -0.3676 -0.1233 3.5131 23 6 1.1052 -1.5909 4.0322 24 7 2.3906 -1.8689 4.0863 25 14 -0.1425 -2.8054 4.7086 26 1 -0.6438 -3.6655 3.6068 27 1 0.5025 -3.6528 5.7436 28 1 -1.2779 -2.0635 5.3133 29 6 1.2840 1.7841 2.3391 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2149 0.4955 -2.6208 36 1 0.6042 1.2136 -2.3799 37 1 2.3255 3.2100 -3.3932 38 1 2.6753 4.4587 -4.6944 39 1 3.0913 5.9954 -6.5692 40 1 2.4621 5.3496 -8.8580 41 1 1.4233 3.1615 -9.2875 42 1 1.0085 1.6055 -7.4283 43 1 4.3159 1.0365 1.1458 44 1 4.0896 2.0355 2.6190 45 1 3.1001 -0.7473 2.0226 46 1 3.5072 -0.0067 3.5941 47 1 2.6900 -2.7044 4.4779 48 1 1.3573 2.5283 3.1321 49 1 0.2920 1.8053 1.8881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567944468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:13 Heat of formation + Delta-G solvation = -17.610680 kcal Electronic energy + Delta-G solvation = -30489.944372 eV Core-core repulsion = 26417.645414 eV Total energy + Delta-G solvation = -4072.298958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76156 -41.00561 -39.40848 -38.95717 -36.23085 -35.75099 -34.24065 -32.41252 -31.91120 -31.86086 -30.54063 -29.65336 -28.42091 -26.33298 -24.81677 -24.07099 -23.40330 -22.25412 -21.93184 -21.58103 -20.17613 -19.26341 -18.86299 -18.30021 -17.41613 -17.20683 -17.03112 -16.66949 -16.55190 -16.01978 -15.88673 -15.59564 -15.43504 -15.28982 -14.79880 -14.61449 -14.46931 -14.27507 -14.00738 -13.85388 -13.68734 -13.67440 -13.43104 -13.34160 -12.96576 -12.80258 -12.63532 -12.61518 -12.33391 -12.05163 -12.02060 -12.00492 -11.86872 -11.50524 -11.47819 -11.20597 -10.86140 -10.65727 -10.40484 -9.95223 -9.91003 -9.71534 -8.80521 -7.78270 -5.13597 -0.16207 0.41794 1.38924 1.50029 1.50919 1.57822 1.61469 1.78429 2.23246 2.53183 2.89498 3.27440 3.41032 3.62018 3.68617 3.90001 3.91256 4.01733 4.02702 4.07002 4.14959 4.25708 4.31296 4.32764 4.47262 4.48467 4.53390 4.57025 4.68822 4.75034 4.82376 4.85830 4.97550 4.99494 5.06085 5.06542 5.08360 5.22973 5.34611 5.45199 5.48945 5.51350 5.53026 5.60286 5.69269 5.83646 5.95141 6.24123 6.33538 6.39118 6.94026 7.02580 7.15297 7.81771 8.46353 9.30460 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.002243 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.218514 B =12479.744889 C =13241.324972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.089 3.911 3 N -0.578 5.578 4 C 0.514 3.486 5 O -0.569 6.569 6 C 0.104 3.896 7 N -0.707 5.707 8 C 0.558 3.442 9 O -0.575 6.575 10 C -0.157 4.157 11 C -0.090 4.090 12 C -0.129 4.129 13 C -0.089 4.089 14 C -0.130 4.130 15 C -0.076 4.076 16 C 0.135 3.865 17 H 0.110 0.890 18 C -0.141 4.141 19 C 0.183 3.817 20 N -0.609 5.609 21 C -0.220 4.220 22 H 0.080 0.920 23 C -0.060 4.060 24 N -0.947 5.947 25 Si 0.965 3.035 26 H -0.286 1.286 27 H -0.302 1.302 28 H -0.274 1.274 29 C 0.123 3.877 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.416 0.584 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.244 0.756 48 H 0.035 0.965 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 13.509 -22.481 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 N -0.309 5.309 4 C 0.303 3.697 5 O -0.449 6.449 6 C -0.022 4.022 7 N -0.362 5.362 8 C 0.347 3.653 9 O -0.456 6.456 10 C -0.160 4.160 11 C -0.109 4.109 12 C -0.147 4.147 13 C -0.107 4.107 14 C -0.148 4.148 15 C -0.095 4.095 16 C 0.031 3.969 17 H 0.128 0.872 18 C -0.180 4.180 19 C 0.058 3.942 20 N -0.336 5.336 21 C -0.349 4.349 22 H 0.098 0.902 23 C -0.253 4.253 24 N -0.597 5.597 25 Si 0.795 3.205 26 H -0.213 1.213 27 H -0.229 1.229 28 H -0.199 1.199 29 C -0.003 4.003 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.256 0.744 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.144 0.856 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.490 13.124 -22.452 26.011 hybrid contribution -0.334 -0.965 1.224 1.594 sum 0.156 12.159 -21.228 24.464 Atomic orbital electron populations 1.22108 0.95117 1.02451 1.01588 1.21987 0.95515 0.81253 1.04536 1.47797 1.63173 1.14528 1.05372 1.20576 0.78199 0.85394 0.85562 1.90625 1.46443 1.21115 1.86752 1.21182 1.03621 0.93734 0.83702 1.45623 1.63345 1.21629 1.05645 1.18673 0.77280 0.86366 0.82948 1.90754 1.45277 1.24604 1.84921 1.19863 1.06580 0.96002 0.93563 1.21571 0.96155 0.92269 1.00860 1.21505 1.00138 1.00641 0.92388 1.21828 0.94753 0.96241 0.97829 1.21477 0.99480 0.94146 0.99679 1.21396 0.96593 1.00143 0.91413 1.22138 0.94885 0.97372 0.82546 0.87180 1.23122 0.96938 0.98425 0.99544 1.20963 0.84024 0.92904 0.96271 1.44663 1.06411 1.13923 1.68590 1.19222 0.89539 0.98234 1.27940 0.90206 1.25441 0.97398 1.00424 1.02043 1.70149 1.13510 1.24616 1.51394 0.85283 0.78446 0.79273 0.77460 1.21288 1.22938 1.19930 1.22053 0.97073 0.87475 0.93661 0.91712 0.92757 0.92171 0.89991 0.88532 0.87735 0.87472 0.74444 0.84625 0.82722 0.82403 0.82930 0.85595 0.90960 0.89917 0.96857 0.96258 0.94645 0.94730 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.99 71.98 0.72 -3.91 16 2 C 0.09 2.81 5.04 86.38 0.44 3.24 16 3 N -0.58 -17.66 2.52 -790.12 -1.99 -19.65 16 4 C 0.51 14.71 7.70 87.66 0.67 15.38 16 5 O -0.57 -18.11 15.10 -3.01 -0.05 -18.15 16 6 C 0.10 2.61 4.83 85.64 0.41 3.02 16 7 N -0.71 -16.87 5.48 -469.71 -2.57 -19.44 16 8 C 0.56 14.51 7.77 86.79 0.67 15.18 16 9 O -0.57 -18.60 16.35 -3.86 -0.06 -18.67 16 10 C -0.16 -3.28 5.87 -20.09 -0.12 -3.40 16 11 C -0.09 -1.43 9.54 22.53 0.21 -1.22 16 12 C -0.13 -1.46 10.03 22.23 0.22 -1.24 16 13 C -0.09 -0.87 10.04 22.33 0.22 -0.65 16 14 C -0.13 -1.62 10.03 22.23 0.22 -1.40 16 15 C -0.08 -1.43 9.60 22.53 0.22 -1.21 16 16 C 0.13 4.44 3.61 46.38 0.17 4.60 16 17 H 0.11 3.45 7.12 -2.39 -0.02 3.43 16 18 C -0.14 -4.94 6.56 31.78 0.21 -4.73 16 19 C 0.18 8.26 4.34 86.73 0.38 8.64 16 20 N -0.61 -27.80 2.19 -691.99 -1.51 -29.31 16 21 C -0.22 -11.18 10.27 84.03 0.86 -10.32 16 22 H 0.08 3.93 7.84 -2.91 -0.02 3.91 16 23 C -0.06 -3.18 5.46 84.86 0.46 -2.72 16 24 N -0.95 -53.85 10.43 21.65 0.23 -53.62 16 25 Si 0.97 43.89 29.56 68.60 2.03 45.91 16 26 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.12 4.59 6.06 86.86 0.53 5.12 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.84 5.63 -2.39 -0.01 1.82 16 32 H 0.06 1.53 6.31 -2.39 -0.02 1.51 16 33 H 0.08 2.21 6.71 -2.39 -0.02 2.20 16 34 H 0.10 3.84 3.73 -2.39 -0.01 3.83 16 35 H 0.10 2.53 7.28 -2.39 -0.02 2.52 16 36 H 0.11 2.61 6.35 -2.39 -0.02 2.60 16 37 H 0.42 9.03 5.47 -92.71 -0.51 8.53 16 38 H 0.14 1.87 6.41 -2.91 -0.02 1.85 16 39 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.13 2.52 7.65 -2.91 -0.02 2.49 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 45 H 0.01 0.67 6.27 -2.38 -0.01 0.65 16 46 H 0.02 1.02 7.06 -2.39 -0.02 1.00 16 47 H 0.24 13.76 8.31 -92.70 -0.77 12.99 16 48 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.05 1.99 6.00 -2.39 -0.01 1.97 16 Total: -1.00 -66.31 384.56 3.05 -63.26 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.48 Total: 25.29 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 6.50 Total: 24.38 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -5.85 Total: -122.03 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.11 Total: -36.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.31 3.05 -63.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567944468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.652 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds