Wall clock time and date at job start Wed Apr 1 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46738 * 2 1 4 4 C 1.34780 * 119.99817 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00000 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99948 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.46975 * 179.97438 * 6 4 3 8 8 O 1.21283 * 120.00211 * 0.02562 * 7 6 4 9 9 N 1.34782 * 119.99775 * 180.02562 * 7 6 4 10 10 C 1.46495 * 119.99653 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.37953 * 119.71057 * 259.99732 * 11 10 9 13 13 C 1.38224 * 119.82881 * 179.97438 * 12 11 10 14 14 C 1.38000 * 119.71627 * 0.23594 * 13 12 11 15 15 C 1.38801 * 120.50623 * 359.96541 * 14 13 12 16 16 C 1.37650 * 119.86252 * 359.67659 * 15 14 13 17 17 C 1.50603 * 122.91138 * 180.70972 * 16 15 14 18 18 C 1.52787 * 110.82055 * 340.23214 * 17 16 15 19 19 N 1.47238 * 107.90016 * 47.42782 * 18 17 16 20 20 C 1.36941 * 121.34844 * 115.67016 * 19 18 17 21 21 H 1.08008 * 120.00057 * 335.43942 * 20 19 18 22 22 C 1.38811 * 120.00306 * 155.43309 * 20 19 18 23 23 N 1.31618 * 120.00003 * 344.29294 * 22 20 19 24 24 Si 1.86798 * 120.00113 * 164.28827 * 22 20 19 25 25 H 1.48498 * 109.47148 * 60.00504 * 24 22 20 26 26 H 1.48497 * 109.46922 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47438 * 300.00280 * 24 22 20 28 28 C 1.46689 * 117.30771 * 295.65366 * 19 18 17 29 29 H 1.09002 * 109.47028 * 60.00213 * 1 2 3 30 30 H 1.09004 * 109.46655 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47647 * 299.99653 * 1 2 3 32 32 H 1.09000 * 109.47137 * 240.00213 * 2 1 3 33 33 H 1.08996 * 109.47283 * 120.00129 * 2 1 3 34 34 H 0.96995 * 120.00165 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46813 * 59.99631 * 6 4 3 36 36 H 1.08996 * 109.47162 * 299.99998 * 6 4 3 37 37 H 0.96997 * 120.00016 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47778 * 59.99717 * 10 9 7 39 39 H 1.08999 * 109.47626 * 299.99257 * 10 9 7 40 40 H 1.08005 * 120.08317 * 359.97438 * 12 11 10 41 41 H 1.08003 * 120.13837 * 180.26243 * 13 12 11 42 42 H 1.07998 * 119.74925 * 179.97438 * 14 13 12 43 43 H 1.09003 * 109.19967 * 219.90217 * 17 16 15 44 44 H 1.09000 * 109.19970 * 100.56243 * 17 16 15 45 45 H 1.09001 * 109.77831 * 167.02693 * 18 17 16 46 46 H 1.08999 * 109.78020 * 287.77497 * 18 17 16 47 47 H 0.96995 * 120.00160 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.43953 * 164.40058 * 28 19 18 49 49 H 1.08997 * 109.43651 * 284.28374 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0485 0.0001 7 6 5.3526 3.0485 -0.0001 8 8 5.9591 1.9982 -0.0010 9 7 6.0264 4.2158 0.0009 10 6 7.4914 4.2158 0.0002 11 6 7.9936 5.6366 0.0009 12 6 8.4172 6.2127 -1.1788 13 6 8.8778 7.5159 -1.1811 14 6 8.9153 8.2303 -0.0010 15 6 8.4933 7.6503 1.1874 16 6 8.0273 6.3551 1.1904 17 6 7.5383 5.6643 2.4361 18 6 8.0688 6.3618 3.6877 19 7 7.8486 7.8087 3.5270 20 6 7.0045 8.4974 4.3568 21 1 6.2050 7.9788 4.8652 22 6 7.1763 9.8620 4.5446 23 7 8.3052 10.4381 4.1898 24 14 5.8053 10.8806 5.3009 25 1 5.4992 10.3672 6.6603 26 1 6.2352 12.2990 5.3922 27 1 4.5913 10.7856 4.4510 28 6 8.5703 8.4829 2.4424 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3879 2.1185 0.0004 35 1 3.4826 3.5617 0.8905 36 1 3.4818 3.5628 -0.8894 37 1 5.5414 5.0558 0.0013 38 1 7.8544 3.7029 -0.8904 39 1 7.8552 3.7011 0.8895 40 1 8.3889 5.6468 -2.0983 41 1 9.2067 7.9732 -2.1026 42 1 9.2755 9.2484 -0.0021 43 1 7.8809 4.6295 2.4301 44 1 6.4486 5.6811 2.4510 45 1 7.5320 6.0024 4.5657 46 1 9.1342 6.1603 3.7988 47 1 8.4252 11.3917 4.3207 48 1 8.1203 9.4586 2.2588 49 1 9.6142 8.6135 2.7276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570077957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:54 Heat of formation + Delta-G solvation = -28.431907 kcal Electronic energy + Delta-G solvation = -29857.954261 eV Core-core repulsion = 25785.186060 eV Total energy + Delta-G solvation = -4072.768201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.43291 -39.67517 -38.61390 -36.00617 -35.48952 -34.77520 -32.78800 -32.13043 -31.39040 -30.15156 -29.82133 -28.65695 -25.76411 -25.56824 -23.39229 -23.16409 -22.13828 -21.32960 -20.49564 -20.19013 -19.01910 -17.50182 -17.10582 -16.80393 -16.27399 -15.99749 -15.77742 -15.47404 -15.37056 -14.97104 -14.82315 -14.29987 -13.97787 -13.76563 -13.63048 -13.55215 -13.19138 -12.95238 -12.79599 -12.73687 -12.56128 -12.44980 -12.21975 -12.05681 -11.95641 -11.75501 -11.53149 -11.26673 -10.96033 -10.88114 -10.73866 -10.41790 -10.25775 -10.16311 -9.92663 -9.75681 -9.50257 -9.31906 -8.96324 -8.71142 -8.26977 -7.89948 -6.81663 -5.87114 -3.26827 1.60022 1.86331 2.46897 2.72242 2.73312 3.33629 3.39669 3.40143 3.44726 4.20005 4.35609 4.42603 4.60026 4.70106 4.77656 4.91744 4.94424 4.96867 5.08752 5.15559 5.25090 5.30453 5.41115 5.43296 5.52266 5.53018 5.53776 5.64982 5.77586 5.83472 5.98762 6.10053 6.13866 6.16443 6.21392 6.44312 6.47856 6.54489 6.64486 6.82240 6.84223 6.94091 7.09520 7.18928 7.21350 7.43507 7.52767 7.59427 7.71251 8.05769 8.31158 8.31627 9.11869 9.74288 10.32628 11.23364 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.002610 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.807553 B =10726.803533 C =12568.462842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.739 5.739 4 C 0.512 3.488 5 O -0.493 6.493 6 C -0.167 4.167 7 C 0.511 3.489 8 O -0.501 6.501 9 N -0.723 5.723 10 C 0.168 3.832 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.132 4.132 14 C -0.114 4.114 15 C -0.077 4.077 16 C -0.046 4.046 17 C -0.098 4.098 18 C 0.141 3.859 19 N -0.593 5.593 20 C -0.249 4.249 21 H 0.069 0.931 22 C 0.001 3.999 23 N -0.908 5.908 24 Si 0.905 3.095 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.205 3.795 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.026 0.974 47 H 0.256 0.744 48 H 0.097 0.903 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 -12.167 -11.967 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.394 5.394 4 C 0.296 3.704 5 O -0.365 6.365 6 C -0.210 4.210 7 C 0.295 3.705 8 O -0.374 6.374 9 N -0.377 5.377 10 C 0.045 3.955 11 C -0.124 4.124 12 C -0.137 4.137 13 C -0.150 4.150 14 C -0.132 4.132 15 C -0.079 4.079 16 C -0.047 4.047 17 C -0.137 4.137 18 C 0.014 3.986 19 N -0.315 5.315 20 C -0.378 4.378 21 H 0.087 0.913 22 C -0.197 4.197 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.080 3.920 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.114 0.886 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.383 -13.486 -11.900 20.768 hybrid contribution -1.248 1.613 0.259 2.056 sum -11.631 -11.873 -11.641 20.292 Atomic orbital electron populations 1.22005 0.94457 1.03234 1.02526 1.21262 0.94090 0.83027 1.02452 1.46054 1.06970 1.08889 1.77495 1.20043 0.82250 0.90892 0.77253 1.90871 1.54398 1.45476 1.45713 1.21602 0.95597 0.97007 1.06785 1.19896 0.88832 0.84103 0.77680 1.90855 1.69323 1.30495 1.46746 1.46063 1.07240 1.08355 1.76013 1.20123 0.79285 0.93549 1.02530 1.19825 1.03615 0.95184 0.93759 1.20764 1.00756 0.95417 0.96749 1.20937 1.01556 0.94692 0.97828 1.21191 0.99867 0.99983 0.92193 1.21019 0.94977 0.94327 0.97566 1.19451 0.97754 0.93457 0.94050 1.21033 1.00614 0.97814 0.94264 1.20920 0.97463 0.85776 0.94399 1.43995 1.52075 1.02747 1.32685 1.19121 1.05935 0.91026 1.21717 0.91338 1.25012 0.96632 0.98087 1.00014 1.69988 1.22720 1.10725 1.51856 0.86317 0.81680 0.79346 0.79132 1.20865 1.21583 1.21052 1.19768 0.96194 0.94368 0.81710 0.91995 0.90825 0.91902 0.91598 0.91525 0.76720 0.85904 0.86164 0.76440 0.91311 0.90494 0.86863 0.86689 0.86279 0.91887 0.91229 0.92132 0.95548 0.93434 0.88553 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 10.03 37.16 0.37 -0.32 16 2 C 0.12 0.84 6.39 -4.04 -0.03 0.81 16 3 N -0.74 -5.53 5.56 -60.29 -0.33 -5.86 16 4 C 0.51 5.78 7.82 -10.98 -0.09 5.69 16 5 O -0.49 -8.30 14.18 -18.96 -0.27 -8.56 16 6 C -0.17 -1.43 6.19 -29.04 -0.18 -1.61 16 7 C 0.51 6.69 7.82 -10.98 -0.09 6.60 16 8 O -0.50 -9.07 14.18 -18.96 -0.27 -9.34 16 9 N -0.72 -8.61 5.53 -61.47 -0.34 -8.95 16 10 C 0.17 2.27 5.11 -5.20 -0.03 2.24 16 11 C -0.12 -1.82 5.26 -104.44 -0.55 -2.37 16 12 C -0.12 -1.63 9.65 -39.69 -0.38 -2.01 16 13 C -0.13 -1.88 10.05 -39.67 -0.40 -2.28 16 14 C -0.11 -1.90 9.62 -39.46 -0.38 -2.28 16 15 C -0.08 -1.49 5.82 -104.58 -0.61 -2.10 16 16 C -0.05 -0.81 5.76 -104.60 -0.60 -1.41 16 17 C -0.10 -1.70 5.24 -28.04 -0.15 -1.84 16 18 C 0.14 2.88 6.51 -3.75 -0.02 2.86 16 19 N -0.59 -14.39 2.97 -173.93 -0.52 -14.91 16 20 C -0.25 -6.58 9.70 -15.06 -0.15 -6.72 16 21 H 0.07 1.77 7.88 -52.48 -0.41 1.35 16 22 C 0.00 0.02 4.99 -17.43 -0.09 -0.07 16 23 N -0.91 -25.42 11.09 55.49 0.62 -24.81 16 24 Si 0.91 21.02 29.58 -169.99 -5.03 15.99 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.21 4.76 4.85 -5.04 -0.02 4.74 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.40 1.68 8.47 -40.82 -0.35 1.33 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.40 4.13 8.46 -40.82 -0.35 3.78 16 38 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 39 H 0.08 1.13 6.33 -51.93 -0.33 0.80 16 40 H 0.11 1.31 8.02 -52.48 -0.42 0.89 16 41 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.12 1.88 8.05 -52.49 -0.42 1.46 16 43 H 0.06 0.99 6.27 -51.93 -0.33 0.66 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.10 2.47 6.34 -51.93 -0.33 2.14 16 49 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -35.08 398.80 -11.06 -46.14 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.55 Total: 4.37 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.38 Total: -0.07 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.58 Total: -54.53 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.54 Total: -17.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.08 -11.06 -46.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570077957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.706 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds