Wall clock time and date at job start Wed Apr 1 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46738 * 2 1 4 4 C 1.34780 * 119.99817 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00000 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99948 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.46975 * 179.97438 * 6 4 3 8 8 O 1.21283 * 120.00211 * 0.02562 * 7 6 4 9 9 N 1.34782 * 119.99775 * 180.02562 * 7 6 4 10 10 C 1.46495 * 119.99653 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.37953 * 119.71057 * 259.99732 * 11 10 9 13 13 C 1.38224 * 119.82881 * 179.97438 * 12 11 10 14 14 C 1.38000 * 119.71627 * 0.23594 * 13 12 11 15 15 C 1.38801 * 120.50623 * 359.96541 * 14 13 12 16 16 C 1.37650 * 119.86252 * 359.67659 * 15 14 13 17 17 C 1.50603 * 122.91138 * 180.70972 * 16 15 14 18 18 C 1.52787 * 110.82055 * 340.23214 * 17 16 15 19 19 N 1.47238 * 107.90016 * 47.42782 * 18 17 16 20 20 C 1.36941 * 121.34844 * 115.67016 * 19 18 17 21 21 H 1.08008 * 120.00057 * 335.43942 * 20 19 18 22 22 C 1.38811 * 120.00306 * 155.43309 * 20 19 18 23 23 N 1.31618 * 120.00003 * 344.29294 * 22 20 19 24 24 Si 1.86798 * 120.00113 * 164.28827 * 22 20 19 25 25 H 1.48498 * 109.47148 * 60.00504 * 24 22 20 26 26 H 1.48497 * 109.46922 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47438 * 300.00280 * 24 22 20 28 28 C 1.46689 * 117.30771 * 295.65366 * 19 18 17 29 29 H 1.09002 * 109.47028 * 60.00213 * 1 2 3 30 30 H 1.09004 * 109.46655 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47647 * 299.99653 * 1 2 3 32 32 H 1.09000 * 109.47137 * 240.00213 * 2 1 3 33 33 H 1.08996 * 109.47283 * 120.00129 * 2 1 3 34 34 H 0.96995 * 120.00165 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46813 * 59.99631 * 6 4 3 36 36 H 1.08996 * 109.47162 * 299.99998 * 6 4 3 37 37 H 0.96997 * 120.00016 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47778 * 59.99717 * 10 9 7 39 39 H 1.08999 * 109.47626 * 299.99257 * 10 9 7 40 40 H 1.08005 * 120.08317 * 359.97438 * 12 11 10 41 41 H 1.08003 * 120.13837 * 180.26243 * 13 12 11 42 42 H 1.07998 * 119.74925 * 179.97438 * 14 13 12 43 43 H 1.09003 * 109.19967 * 219.90217 * 17 16 15 44 44 H 1.09000 * 109.19970 * 100.56243 * 17 16 15 45 45 H 1.09001 * 109.77831 * 167.02693 * 18 17 16 46 46 H 1.08999 * 109.78020 * 287.77497 * 18 17 16 47 47 H 0.96995 * 120.00160 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.43953 * 164.40058 * 28 19 18 49 49 H 1.08997 * 109.43651 * 284.28374 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0485 0.0001 7 6 5.3526 3.0485 -0.0001 8 8 5.9591 1.9982 -0.0010 9 7 6.0264 4.2158 0.0009 10 6 7.4914 4.2158 0.0002 11 6 7.9936 5.6366 0.0009 12 6 8.4172 6.2127 -1.1788 13 6 8.8778 7.5159 -1.1811 14 6 8.9153 8.2303 -0.0010 15 6 8.4933 7.6503 1.1874 16 6 8.0273 6.3551 1.1904 17 6 7.5383 5.6643 2.4361 18 6 8.0688 6.3618 3.6877 19 7 7.8486 7.8087 3.5270 20 6 7.0045 8.4974 4.3568 21 1 6.2050 7.9788 4.8652 22 6 7.1763 9.8620 4.5446 23 7 8.3052 10.4381 4.1898 24 14 5.8053 10.8806 5.3009 25 1 5.4992 10.3672 6.6603 26 1 6.2352 12.2990 5.3922 27 1 4.5913 10.7856 4.4510 28 6 8.5703 8.4829 2.4424 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3879 2.1185 0.0004 35 1 3.4826 3.5617 0.8905 36 1 3.4818 3.5628 -0.8894 37 1 5.5414 5.0558 0.0013 38 1 7.8544 3.7029 -0.8904 39 1 7.8552 3.7011 0.8895 40 1 8.3889 5.6468 -2.0983 41 1 9.2067 7.9732 -2.1026 42 1 9.2755 9.2484 -0.0021 43 1 7.8809 4.6295 2.4301 44 1 6.4486 5.6811 2.4510 45 1 7.5320 6.0024 4.5657 46 1 9.1342 6.1603 3.7988 47 1 8.4252 11.3917 4.3207 48 1 8.1203 9.4586 2.2588 49 1 9.6142 8.6135 2.7276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570077957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:52 Heat of formation + Delta-G solvation = -51.789062 kcal Electronic energy + Delta-G solvation = -29858.967104 eV Core-core repulsion = 25785.186060 eV Total energy + Delta-G solvation = -4073.781044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.43026 -40.87611 -39.63230 -37.63262 -36.29657 -35.87552 -34.44772 -33.32398 -32.33666 -31.76036 -30.70751 -29.92537 -27.42062 -26.83827 -24.79308 -23.96546 -23.73775 -22.21337 -21.69213 -21.12200 -20.58469 -18.62950 -18.37207 -18.01643 -17.22059 -17.07408 -16.77398 -16.56751 -16.52934 -16.33569 -15.90777 -15.85000 -15.39854 -14.94905 -14.78578 -14.64880 -14.44620 -14.25846 -14.10218 -13.92390 -13.60502 -13.35281 -13.24827 -13.23991 -12.88579 -12.79256 -12.69132 -12.66515 -12.51027 -12.35326 -12.31683 -12.18276 -11.83947 -11.60204 -11.32112 -11.19782 -10.66932 -10.52059 -10.04493 -10.01176 -9.52512 -9.30972 -8.77015 -7.89476 -5.32422 0.36866 0.58166 1.48258 1.50224 1.57142 1.65564 1.77635 1.95644 2.50763 2.57348 2.97895 3.27504 3.59835 3.62454 3.72978 3.95438 4.04320 4.04484 4.17594 4.21164 4.22951 4.35438 4.39439 4.43213 4.47237 4.54059 4.57232 4.66320 4.76020 4.80273 4.84778 4.97916 5.01004 5.07842 5.13687 5.16893 5.19587 5.28512 5.39826 5.44932 5.47012 5.52683 5.60077 5.65586 5.72167 5.96673 6.18163 6.32462 6.57926 6.64820 7.11096 7.29132 7.42788 7.79878 8.35576 9.19283 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.002610 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.807553 B =10726.803533 C =12568.462842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 N -0.720 5.720 4 C 0.504 3.496 5 O -0.559 6.559 6 C -0.156 4.156 7 C 0.507 3.493 8 O -0.556 6.556 9 N -0.712 5.712 10 C 0.172 3.828 11 C -0.112 4.112 12 C -0.104 4.104 13 C -0.120 4.120 14 C -0.123 4.123 15 C -0.107 4.107 16 C -0.058 4.058 17 C -0.084 4.084 18 C 0.136 3.864 19 N -0.610 5.610 20 C -0.259 4.259 21 H 0.073 0.927 22 C -0.053 4.053 23 N -0.940 5.940 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.221 3.779 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.418 0.582 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.412 0.588 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.251 0.749 48 H 0.063 0.937 49 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -12.491 -14.025 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.375 5.375 4 C 0.290 3.710 5 O -0.435 6.435 6 C -0.198 4.198 7 C 0.293 3.707 8 O -0.433 6.433 9 N -0.366 5.366 10 C 0.049 3.951 11 C -0.112 4.112 12 C -0.123 4.123 13 C -0.138 4.138 14 C -0.142 4.142 15 C -0.109 4.109 16 C -0.059 4.059 17 C -0.123 4.123 18 C 0.010 3.990 19 N -0.333 5.333 20 C -0.389 4.389 21 H 0.091 0.909 22 C -0.248 4.248 23 N -0.586 5.586 24 Si 0.799 3.201 25 H -0.202 1.202 26 H -0.222 1.222 27 H -0.201 1.201 28 C 0.096 3.904 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.256 0.744 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.249 0.751 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.037 0.963 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -13.041 -13.783 -13.965 23.560 hybrid contribution -0.416 1.646 0.854 1.901 sum -13.457 -12.137 -13.110 22.367 Atomic orbital electron populations 1.21944 0.91651 1.04082 1.03472 1.21318 0.96272 0.82722 1.01007 1.45942 1.06270 1.09750 1.75560 1.20591 0.82797 0.91429 0.76195 1.90854 1.56188 1.47474 1.49013 1.21651 0.92080 0.95825 1.10250 1.20624 0.90631 0.83227 0.76184 1.90848 1.70783 1.32420 1.49264 1.45957 1.06571 1.08758 1.75312 1.19991 0.80384 0.92379 1.02317 1.19834 1.03012 0.95319 0.93083 1.21170 0.98391 0.95213 0.97497 1.21265 1.00036 0.94681 0.97845 1.21278 1.00043 1.00377 0.92481 1.20654 0.98540 0.95137 0.96534 1.19456 0.98308 0.92972 0.95137 1.20847 1.00716 0.98106 0.92602 1.21071 0.97274 0.84178 0.96445 1.44250 1.51978 1.04158 1.32931 1.19476 1.06227 0.91564 1.21591 0.90924 1.25802 0.98684 0.99184 1.01121 1.70169 1.24559 1.10454 1.53440 0.85287 0.79064 0.77228 0.78555 1.20167 1.22186 1.20091 1.19324 0.93567 0.93970 0.83582 0.90812 0.90119 0.91057 0.92968 0.93275 0.74419 0.82676 0.81971 0.75127 0.90616 0.91805 0.83470 0.83272 0.86426 0.90179 0.90709 0.91882 0.96325 0.94034 0.91907 0.97929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.03 71.98 0.72 -0.22 16 2 C 0.11 1.51 6.39 86.38 0.55 2.06 16 3 N -0.72 -9.25 5.56 -463.05 -2.57 -11.82 16 4 C 0.50 10.63 7.82 87.66 0.69 11.32 16 5 O -0.56 -19.09 14.18 20.40 0.29 -18.80 16 6 C -0.16 -2.15 6.19 29.10 0.18 -1.97 16 7 C 0.51 12.22 7.82 87.66 0.69 12.91 16 8 O -0.56 -19.97 14.18 20.40 0.29 -19.68 16 9 N -0.71 -14.90 5.53 -466.79 -2.58 -17.49 16 10 C 0.17 4.24 5.11 85.63 0.44 4.68 16 11 C -0.11 -3.00 5.26 -19.75 -0.10 -3.10 16 12 C -0.10 -2.45 9.65 22.20 0.21 -2.23 16 13 C -0.12 -3.03 10.05 22.21 0.22 -2.81 16 14 C -0.12 -4.04 9.62 22.35 0.22 -3.83 16 15 C -0.11 -4.19 5.82 -19.83 -0.12 -4.30 16 16 C -0.06 -1.97 5.76 -19.85 -0.11 -2.08 16 17 C -0.08 -2.84 5.24 29.75 0.16 -2.68 16 18 C 0.14 5.66 6.51 86.17 0.56 6.22 16 19 N -0.61 -30.65 2.97 -704.18 -2.09 -32.74 16 20 C -0.26 -13.99 9.70 84.03 0.81 -13.17 16 21 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 22 C -0.05 -2.91 4.99 84.86 0.42 -2.49 16 23 N -0.94 -54.92 11.09 21.65 0.24 -54.68 16 24 Si 0.97 43.82 29.58 68.60 2.03 45.85 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.22 10.85 4.85 85.63 0.42 11.26 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.42 2.04 8.47 -92.71 -0.79 1.26 16 35 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.41 6.95 8.46 -92.71 -0.78 6.17 16 38 H 0.08 1.80 7.98 -2.39 -0.02 1.79 16 39 H 0.06 1.77 6.33 -2.39 -0.02 1.76 16 40 H 0.15 2.56 8.02 -2.91 -0.02 2.54 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.12 3.79 8.05 -2.91 -0.02 3.76 16 43 H 0.08 2.42 6.27 -2.39 -0.01 2.41 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.06 2.53 7.96 -2.39 -0.02 2.51 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 48 H 0.06 3.43 6.34 -2.39 -0.02 3.42 16 49 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -82.52 398.80 0.96 -81.55 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.59 Total: 18.25 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.95 Total: 9.56 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -7.01 Total: -116.73 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: 0.58 Total: -38.48 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.52 0.96 -81.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570077957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.765 kcal (2) G-P(sol) polarization free energy of solvation -82.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds