Wall clock time and date at job start Wed Apr 1 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46993 * 2 1 4 4 C 1.34781 * 120.00239 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99416 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00163 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.47033 * 180.02562 * 6 4 3 8 8 O 1.21280 * 119.99799 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00086 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99950 * 180.27461 * 9 7 6 11 11 C 1.53004 * 109.46732 * 179.72135 * 10 9 7 12 12 H 1.08993 * 109.77173 * 294.24510 * 11 10 9 13 13 C 1.52794 * 109.77244 * 173.43782 * 11 10 9 14 14 C 1.50604 * 110.84254 * 192.85229 * 13 11 10 15 15 C 1.38970 * 117.61792 * 199.56692 * 14 13 11 16 16 C 1.37911 * 120.58320 * 181.14066 * 15 14 13 17 17 C 1.38268 * 119.82071 * 359.95467 * 16 15 14 18 18 C 1.37954 * 119.72088 * 359.75816 * 17 16 15 19 19 C 1.37671 * 122.85405 * 20.23438 * 14 13 11 20 20 C 1.50808 * 122.34765 * 358.56535 * 19 14 13 21 21 N 1.46686 * 109.68987 * 11.44940 * 20 19 14 22 22 C 1.36937 * 121.32648 * 135.69871 * 21 20 19 23 23 H 1.07993 * 120.00107 * 144.30215 * 22 21 20 24 24 C 1.38817 * 119.99834 * 324.30033 * 22 21 20 25 25 N 1.31618 * 119.99625 * 158.39599 * 24 22 21 26 26 Si 1.86798 * 120.00112 * 338.38860 * 24 22 21 27 27 H 1.48501 * 109.46952 * 95.35978 * 26 24 22 28 28 H 1.48501 * 109.46920 * 215.35266 * 26 24 22 29 29 H 1.48496 * 109.47513 * 335.35475 * 26 24 22 30 30 H 1.09008 * 109.46750 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47374 * 299.99724 * 1 2 3 32 32 H 1.08993 * 109.47120 * 60.00580 * 1 2 3 33 33 H 1.08999 * 109.47531 * 239.99750 * 2 1 3 34 34 H 1.09002 * 109.47144 * 119.99701 * 2 1 3 35 35 H 0.96999 * 120.00263 * 359.97438 * 3 2 1 36 36 H 1.08999 * 109.47004 * 60.00052 * 6 4 3 37 37 H 1.08993 * 109.46971 * 300.00135 * 6 4 3 38 38 H 0.97003 * 120.00081 * 359.97438 * 9 7 6 39 39 H 1.08993 * 109.47027 * 299.71741 * 10 9 7 40 40 H 1.08990 * 109.47208 * 59.72264 * 10 9 7 41 41 H 1.08999 * 109.20858 * 313.20535 * 13 11 10 42 42 H 1.09003 * 109.20006 * 72.50924 * 13 11 10 43 43 H 1.07998 * 119.70816 * 1.12060 * 15 14 13 44 44 H 1.07998 * 120.08667 * 179.97438 * 16 15 14 45 45 H 1.08003 * 120.13581 * 179.75264 * 17 16 15 46 46 H 1.08000 * 119.74404 * 180.02562 * 18 17 16 47 47 H 1.09004 * 109.43687 * 251.38824 * 20 19 14 48 48 H 1.08995 * 109.40417 * 131.49980 * 20 19 14 49 49 H 0.97005 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0484 -0.0001 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0010 9 7 6.0265 4.2156 0.0001 10 6 7.4915 4.2156 -0.0058 11 6 8.0014 5.6581 -0.0115 12 1 7.7234 6.1438 -0.9467 13 6 9.5211 5.6698 0.1467 14 6 10.0169 7.0577 0.4568 15 6 11.3598 7.3291 0.2237 16 6 11.8839 8.5726 0.5081 17 6 11.0681 9.5599 1.0290 18 6 9.7333 9.2951 1.2559 19 6 9.2038 8.0446 0.9668 20 6 7.7350 7.8249 1.2285 21 7 7.4228 6.3954 1.1240 22 6 6.6248 5.7718 2.0456 23 1 5.9505 4.9880 1.7337 24 6 6.6825 6.1471 3.3808 25 7 5.6707 5.8875 4.1816 26 14 8.1960 7.0204 4.0410 27 1 7.9721 8.4882 4.0131 28 1 8.4489 6.5848 5.4380 29 1 9.3701 6.6826 3.1969 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 -0.0004 36 1 3.4819 3.5627 0.8894 37 1 3.4828 3.5616 -0.8905 38 1 5.5415 5.0556 -0.0003 39 1 7.8585 3.7040 0.8839 40 1 7.8512 3.6996 -0.8960 41 1 9.8024 4.9989 0.9583 42 1 9.9805 5.3236 -0.7792 43 1 11.9986 6.5594 -0.1835 44 1 12.9288 8.7747 0.3241 45 1 11.4741 10.5343 1.2574 46 1 9.0956 10.0662 1.6624 47 1 7.1490 8.3785 0.4948 48 1 7.4888 8.1776 2.2300 49 1 5.7109 6.1501 5.1146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570268945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:14 Heat of formation + Delta-G solvation = -9.474048 kcal Electronic energy + Delta-G solvation = -30618.932201 eV Core-core repulsion = 26546.986074 eV Total energy + Delta-G solvation = -4071.946127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.99037 -39.57942 -38.38697 -36.65188 -35.10889 -33.75123 -32.92279 -31.81126 -31.46949 -30.49195 -29.70844 -28.91336 -25.73346 -25.27039 -23.24215 -22.99740 -21.75991 -21.30476 -20.68114 -19.77317 -18.97508 -17.25411 -16.95221 -16.37436 -16.11064 -15.84600 -15.46054 -15.37014 -15.18572 -14.97153 -14.68733 -14.47195 -14.34306 -13.58152 -13.37045 -13.26529 -13.05419 -12.87379 -12.75189 -12.60693 -12.47621 -12.37235 -12.19901 -11.96820 -11.84223 -11.56288 -11.42500 -11.38551 -11.18322 -11.06336 -10.66058 -10.39118 -10.27987 -10.02288 -9.77210 -9.58264 -8.98329 -8.92509 -8.65817 -8.42738 -8.15467 -8.07569 -6.97692 -6.04575 -3.48390 1.70079 1.74046 2.88777 3.10624 3.28206 3.31381 3.47489 3.57799 3.94212 4.09830 4.48864 4.75314 4.76200 4.92776 4.94177 5.09968 5.17328 5.17759 5.22077 5.29819 5.31001 5.32923 5.43126 5.61968 5.62706 5.66511 5.71346 5.78462 5.82104 5.87646 5.91364 5.96785 6.04645 6.19355 6.32472 6.33708 6.37312 6.45691 6.50356 6.54141 6.77322 6.78969 6.83199 7.09951 7.16006 7.37402 7.57343 7.89313 8.18281 8.29257 8.45854 8.84185 8.93603 9.61571 10.02434 11.07857 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002763 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.617412 B =10132.315748 C =11104.508433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.741 5.741 4 C 0.514 3.486 5 O -0.494 6.494 6 C -0.165 4.165 7 C 0.511 3.489 8 O -0.515 6.515 9 N -0.704 5.704 10 C 0.139 3.861 11 C 0.159 3.841 12 H 0.050 0.950 13 C -0.097 4.097 14 C -0.056 4.056 15 C -0.127 4.127 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.082 4.082 20 C 0.168 3.832 21 N -0.601 5.601 22 C -0.284 4.284 23 H 0.113 0.887 24 C 0.039 3.961 25 N -0.898 5.898 26 Si 0.862 3.138 27 H -0.288 1.288 28 H -0.305 1.305 29 H -0.257 1.257 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.410 0.590 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.045 0.955 48 H 0.077 0.923 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 0.889 -10.750 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.396 5.396 4 C 0.298 3.702 5 O -0.366 6.366 6 C -0.208 4.208 7 C 0.294 3.706 8 O -0.390 6.390 9 N -0.358 5.358 10 C 0.015 3.985 11 C 0.052 3.948 12 H 0.068 0.932 13 C -0.136 4.136 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.144 4.144 19 C -0.083 4.083 20 C 0.043 3.957 21 N -0.325 5.325 22 C -0.412 4.412 23 H 0.130 0.870 24 C -0.162 4.162 25 N -0.539 5.539 26 Si 0.692 3.308 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.181 1.181 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.247 0.753 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.831 -0.623 -10.572 10.962 hybrid contribution 0.496 1.597 0.914 1.905 sum -2.336 0.973 -9.657 9.983 Atomic orbital electron populations 1.21998 0.94666 1.02999 1.02471 1.21221 0.93896 0.83394 1.02283 1.46055 1.07114 1.08597 1.77864 1.20137 0.82038 0.91140 0.76885 1.90844 1.54411 1.45597 1.45714 1.21579 0.96207 0.96394 1.06643 1.19754 0.88641 0.84287 0.77879 1.90801 1.69379 1.30775 1.48077 1.46034 1.07398 1.08463 1.73923 1.21210 0.79824 0.96016 1.01416 1.20880 0.90535 0.91428 0.91914 0.93236 1.20960 0.98061 0.93319 1.01276 1.19482 0.92947 0.95394 0.97758 1.21156 0.94922 0.96919 1.01503 1.20914 0.99208 0.93866 1.01049 1.20944 0.94006 0.99017 1.00842 1.21105 0.95555 0.96749 1.00990 1.20432 0.97963 0.92941 0.97009 1.20101 0.88301 0.86736 1.00532 1.44462 1.57119 1.02769 1.28193 1.19452 1.14704 1.20665 0.86378 0.86986 1.25496 0.96525 0.98049 0.96088 1.69807 1.29246 1.48814 1.06031 0.87180 0.87085 0.78532 0.77997 1.21641 1.23311 1.18138 0.91024 0.91913 0.92083 0.91792 0.91660 0.76803 0.85583 0.86692 0.75259 0.90841 0.92303 0.90294 0.91551 0.86655 0.86759 0.86675 0.86533 0.93728 0.90494 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 10.03 37.16 0.37 -0.71 16 2 C 0.12 1.18 6.39 -4.04 -0.03 1.15 16 3 N -0.74 -8.16 5.56 -60.30 -0.33 -8.50 16 4 C 0.51 7.95 7.82 -10.98 -0.09 7.87 16 5 O -0.49 -10.29 14.18 -18.96 -0.27 -10.55 16 6 C -0.17 -2.27 6.19 -29.03 -0.18 -2.45 16 7 C 0.51 9.45 7.81 -10.99 -0.09 9.36 16 8 O -0.52 -11.88 14.18 -18.96 -0.27 -12.15 16 9 N -0.70 -12.32 3.28 -60.30 -0.20 -12.52 16 10 C 0.14 2.51 4.56 -4.04 -0.02 2.49 16 11 C 0.16 2.80 3.02 -67.64 -0.20 2.59 16 12 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 13 C -0.10 -1.63 5.21 -28.04 -0.15 -1.78 16 14 C -0.06 -0.98 5.62 -104.60 -0.59 -1.57 16 15 C -0.13 -1.96 9.59 -39.43 -0.38 -2.34 16 16 C -0.13 -1.90 10.05 -39.69 -0.40 -2.30 16 17 C -0.13 -1.92 10.05 -39.67 -0.40 -2.32 16 18 C -0.13 -2.11 9.62 -39.46 -0.38 -2.49 16 19 C -0.08 -1.53 4.22 -104.55 -0.44 -1.97 16 20 C 0.17 3.37 5.14 -5.04 -0.03 3.35 16 21 N -0.60 -12.55 2.46 -166.38 -0.41 -12.96 16 22 C -0.28 -6.96 8.35 -15.06 -0.13 -7.08 16 23 H 0.11 2.78 4.86 -52.49 -0.26 2.53 16 24 C 0.04 1.06 5.27 -17.43 -0.09 0.97 16 25 N -0.90 -25.80 13.97 55.49 0.78 -25.03 16 26 Si 0.86 21.59 24.41 -169.99 -4.15 17.44 16 27 H -0.29 -7.03 6.70 56.52 0.38 -6.66 16 28 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 29 H -0.26 -6.45 6.21 56.52 0.35 -6.10 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.07 8.47 -40.82 -0.35 2.73 16 36 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.41 6.78 7.12 -40.82 -0.29 6.49 16 39 H 0.07 1.55 7.89 -51.93 -0.41 1.14 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.45 8.01 -51.93 -0.42 1.04 16 42 H 0.07 0.93 8.11 -51.93 -0.42 0.50 16 43 H 0.12 1.51 8.05 -52.49 -0.42 1.09 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 46 H 0.12 1.79 8.05 -52.49 -0.42 1.37 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 1.72 3.96 -51.93 -0.21 1.51 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 387.35 15.07 5.84 5.84 Total: -1.00 -35.41 387.35 -9.69 -45.10 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.47 Total: 10.55 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -3.20 Total: 2.78 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.17 Total: -59.00 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.54 Total: -22.70 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.41 -9.69 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570268945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.626 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds