Wall clock time and date at job start Wed Apr 1 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46993 * 2 1 4 4 C 1.34781 * 120.00239 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99416 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00163 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.47033 * 180.02562 * 6 4 3 8 8 O 1.21280 * 119.99799 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00086 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99950 * 180.27461 * 9 7 6 11 11 C 1.53004 * 109.46732 * 179.72135 * 10 9 7 12 12 H 1.08993 * 109.77173 * 294.24510 * 11 10 9 13 13 C 1.52794 * 109.77244 * 173.43782 * 11 10 9 14 14 C 1.50604 * 110.84254 * 192.85229 * 13 11 10 15 15 C 1.38970 * 117.61792 * 199.56692 * 14 13 11 16 16 C 1.37911 * 120.58320 * 181.14066 * 15 14 13 17 17 C 1.38268 * 119.82071 * 359.95467 * 16 15 14 18 18 C 1.37954 * 119.72088 * 359.75816 * 17 16 15 19 19 C 1.37671 * 122.85405 * 20.23438 * 14 13 11 20 20 C 1.50808 * 122.34765 * 358.56535 * 19 14 13 21 21 N 1.46686 * 109.68987 * 11.44940 * 20 19 14 22 22 C 1.36937 * 121.32648 * 135.69871 * 21 20 19 23 23 H 1.07993 * 120.00107 * 144.30215 * 22 21 20 24 24 C 1.38817 * 119.99834 * 324.30033 * 22 21 20 25 25 N 1.31618 * 119.99625 * 158.39599 * 24 22 21 26 26 Si 1.86798 * 120.00112 * 338.38860 * 24 22 21 27 27 H 1.48501 * 109.46952 * 95.35978 * 26 24 22 28 28 H 1.48501 * 109.46920 * 215.35266 * 26 24 22 29 29 H 1.48496 * 109.47513 * 335.35475 * 26 24 22 30 30 H 1.09008 * 109.46750 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47374 * 299.99724 * 1 2 3 32 32 H 1.08993 * 109.47120 * 60.00580 * 1 2 3 33 33 H 1.08999 * 109.47531 * 239.99750 * 2 1 3 34 34 H 1.09002 * 109.47144 * 119.99701 * 2 1 3 35 35 H 0.96999 * 120.00263 * 359.97438 * 3 2 1 36 36 H 1.08999 * 109.47004 * 60.00052 * 6 4 3 37 37 H 1.08993 * 109.46971 * 300.00135 * 6 4 3 38 38 H 0.97003 * 120.00081 * 359.97438 * 9 7 6 39 39 H 1.08993 * 109.47027 * 299.71741 * 10 9 7 40 40 H 1.08990 * 109.47208 * 59.72264 * 10 9 7 41 41 H 1.08999 * 109.20858 * 313.20535 * 13 11 10 42 42 H 1.09003 * 109.20006 * 72.50924 * 13 11 10 43 43 H 1.07998 * 119.70816 * 1.12060 * 15 14 13 44 44 H 1.07998 * 120.08667 * 179.97438 * 16 15 14 45 45 H 1.08003 * 120.13581 * 179.75264 * 17 16 15 46 46 H 1.08000 * 119.74404 * 180.02562 * 18 17 16 47 47 H 1.09004 * 109.43687 * 251.38824 * 20 19 14 48 48 H 1.08995 * 109.40417 * 131.49980 * 20 19 14 49 49 H 0.97005 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0484 -0.0001 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0010 9 7 6.0265 4.2156 0.0001 10 6 7.4915 4.2156 -0.0058 11 6 8.0014 5.6581 -0.0115 12 1 7.7234 6.1438 -0.9467 13 6 9.5211 5.6698 0.1467 14 6 10.0169 7.0577 0.4568 15 6 11.3598 7.3291 0.2237 16 6 11.8839 8.5726 0.5081 17 6 11.0681 9.5599 1.0290 18 6 9.7333 9.2951 1.2559 19 6 9.2038 8.0446 0.9668 20 6 7.7350 7.8249 1.2285 21 7 7.4228 6.3954 1.1240 22 6 6.6248 5.7718 2.0456 23 1 5.9505 4.9880 1.7337 24 6 6.6825 6.1471 3.3808 25 7 5.6707 5.8875 4.1816 26 14 8.1960 7.0204 4.0410 27 1 7.9721 8.4882 4.0131 28 1 8.4489 6.5848 5.4380 29 1 9.3701 6.6826 3.1969 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 -0.0004 36 1 3.4819 3.5627 0.8894 37 1 3.4828 3.5616 -0.8905 38 1 5.5415 5.0556 -0.0003 39 1 7.8585 3.7040 0.8839 40 1 7.8512 3.6996 -0.8960 41 1 9.8024 4.9989 0.9583 42 1 9.9805 5.3236 -0.7792 43 1 11.9986 6.5594 -0.1835 44 1 12.9288 8.7747 0.3241 45 1 11.4741 10.5343 1.2574 46 1 9.0956 10.0662 1.6624 47 1 7.1490 8.3785 0.4948 48 1 7.4888 8.1776 2.2300 49 1 5.7109 6.1501 5.1146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570268945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:12 Heat of formation + Delta-G solvation = -33.406458 kcal Electronic energy + Delta-G solvation = -30619.969989 eV Core-core repulsion = 26546.986074 eV Total energy + Delta-G solvation = -4072.983914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.35023 -40.87200 -39.73040 -38.11965 -36.17586 -35.29649 -34.52725 -33.40128 -32.62619 -31.85792 -30.97961 -30.04551 -27.33558 -26.65281 -24.82503 -23.93972 -23.00472 -22.62160 -21.95124 -21.13757 -20.50360 -18.86111 -18.20216 -17.81175 -17.40922 -17.05721 -16.94640 -16.66620 -16.59153 -16.31587 -15.94020 -15.77827 -15.54606 -15.13328 -14.69978 -14.59547 -14.51568 -14.39252 -14.17351 -13.97487 -13.86996 -13.68612 -13.23068 -13.15190 -12.89400 -12.78743 -12.74817 -12.64863 -12.54403 -12.30042 -12.24981 -12.11668 -11.85500 -11.55436 -11.40300 -11.10318 -10.63929 -10.38517 -10.02412 -9.74444 -9.61718 -9.37479 -8.76212 -8.11293 -5.47334 0.49115 0.51181 1.26303 1.41259 1.53351 1.69180 1.86194 2.02037 2.45387 2.67985 2.87735 3.11632 3.25533 3.67386 3.78481 3.92696 4.06620 4.11587 4.17623 4.22990 4.24554 4.34408 4.39444 4.39756 4.44413 4.54313 4.55609 4.58662 4.64882 4.73052 4.84163 4.89584 4.90094 4.95660 4.99293 5.09525 5.15978 5.20499 5.29620 5.36647 5.54962 5.59379 5.62097 5.68419 5.81791 5.98410 6.17536 6.31625 6.62338 6.77469 6.97755 7.35222 7.52640 7.65240 8.12439 9.04010 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002763 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.617412 B =10132.315748 C =11104.508433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.719 5.719 4 C 0.507 3.493 5 O -0.557 6.557 6 C -0.155 4.155 7 C 0.502 3.498 8 O -0.566 6.566 9 N -0.698 5.698 10 C 0.142 3.858 11 C 0.164 3.836 12 H 0.076 0.924 13 C -0.094 4.094 14 C -0.078 4.078 15 C -0.131 4.131 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.142 4.142 19 C -0.109 4.109 20 C 0.169 3.831 21 N -0.611 5.611 22 C -0.246 4.246 23 H 0.109 0.891 24 C -0.015 4.015 25 N -0.942 5.942 26 Si 0.908 3.092 27 H -0.283 1.283 28 H -0.330 1.330 29 H -0.258 1.258 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.418 0.582 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.416 0.584 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.139 0.861 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.122 0.878 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 2.677 -13.176 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.375 5.375 4 C 0.293 3.707 5 O -0.434 6.434 6 C -0.197 4.197 7 C 0.288 3.712 8 O -0.444 6.444 9 N -0.352 5.352 10 C 0.018 3.982 11 C 0.059 3.941 12 H 0.094 0.906 13 C -0.133 4.133 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.160 4.160 19 C -0.110 4.110 20 C 0.044 3.956 21 N -0.336 5.336 22 C -0.376 4.376 23 H 0.125 0.875 24 C -0.211 4.211 25 N -0.588 5.588 26 Si 0.740 3.260 27 H -0.210 1.210 28 H -0.261 1.261 29 H -0.183 1.183 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.255 0.745 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.255 0.745 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.157 0.843 44 H 0.167 0.833 45 H 0.163 0.837 46 H 0.140 0.860 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.429 1.239 -13.044 13.326 hybrid contribution 0.408 1.051 1.534 1.903 sum -2.021 2.290 -11.511 11.909 Atomic orbital electron populations 1.21938 0.91364 1.04179 1.03488 1.21344 0.96483 0.82560 1.00970 1.45920 1.06047 1.09855 1.75663 1.20503 0.82926 0.91183 0.76091 1.90825 1.56251 1.47327 1.48992 1.21600 0.92564 0.96026 1.09518 1.20572 0.90658 0.83496 0.76518 1.90784 1.70865 1.32481 1.50312 1.46027 1.07253 1.08654 1.73264 1.21150 0.80343 0.96244 1.00499 1.20987 0.91219 0.90600 0.91326 0.90607 1.20915 0.97199 0.93061 1.02096 1.19660 0.94167 0.95249 0.98765 1.21469 0.94190 0.98199 1.00985 1.21370 1.00833 0.93044 0.99275 1.21339 0.93100 1.00575 0.99564 1.21306 0.96910 0.96352 1.01434 1.20373 0.97090 0.94391 0.99161 1.20059 0.90187 0.85852 0.99484 1.44571 1.57232 1.03724 1.28064 1.19611 1.13222 1.18368 0.86380 0.87457 1.25927 0.98032 1.00173 0.97003 1.69891 1.30770 1.52198 1.05932 0.86425 0.85472 0.78186 0.75879 1.21036 1.26080 1.18261 0.89834 0.91256 0.90591 0.92696 0.93602 0.74487 0.84209 0.81828 0.74546 0.94622 0.90460 0.92569 0.88188 0.84291 0.83308 0.83659 0.85997 0.92111 0.93200 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.03 71.98 0.72 -0.97 16 2 C 0.11 2.19 6.39 86.38 0.55 2.74 16 3 N -0.72 -14.97 5.56 -463.07 -2.57 -17.55 16 4 C 0.51 15.61 7.82 87.66 0.69 16.29 16 5 O -0.56 -24.10 14.18 20.41 0.29 -23.81 16 6 C -0.15 -4.03 6.19 29.10 0.18 -3.85 16 7 C 0.50 18.59 7.81 87.66 0.68 19.27 16 8 O -0.57 -26.97 14.18 20.41 0.29 -26.68 16 9 N -0.70 -24.06 3.28 -463.08 -1.52 -25.58 16 10 C 0.14 5.08 4.56 86.38 0.39 5.47 16 11 C 0.16 5.53 3.02 44.78 0.14 5.67 16 12 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.09 -2.99 5.21 29.75 0.15 -2.83 16 14 C -0.08 -2.59 5.62 -19.85 -0.11 -2.70 16 15 C -0.13 -3.58 9.59 22.37 0.21 -3.36 16 16 C -0.13 -3.10 10.05 22.20 0.22 -2.88 16 17 C -0.13 -3.31 10.05 22.21 0.22 -3.09 16 18 C -0.14 -4.46 9.62 22.35 0.22 -4.24 16 19 C -0.11 -3.88 4.22 -19.82 -0.08 -3.97 16 20 C 0.17 6.62 5.14 85.63 0.44 7.06 16 21 N -0.61 -25.13 2.46 -680.32 -1.67 -26.81 16 22 C -0.25 -12.17 8.35 84.03 0.70 -11.47 16 23 H 0.11 5.38 4.86 -2.91 -0.01 5.37 16 24 C -0.02 -0.84 5.27 84.86 0.45 -0.40 16 25 N -0.94 -55.99 13.97 21.65 0.30 -55.69 16 26 Si 0.91 46.14 24.41 68.60 1.67 47.82 16 27 H -0.28 -13.81 6.70 99.48 0.67 -13.15 16 28 H -0.33 -17.94 7.11 99.48 0.71 -17.24 16 29 H -0.26 -12.96 6.21 99.48 0.62 -12.34 16 30 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.42 5.37 8.47 -92.71 -0.79 4.59 16 36 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.42 13.20 7.12 -92.71 -0.66 12.54 16 39 H 0.04 1.55 7.89 -2.39 -0.02 1.53 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 2.04 8.01 -2.39 -0.02 2.02 16 42 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 43 H 0.14 3.07 8.05 -2.91 -0.02 3.05 16 44 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 46 H 0.12 3.57 8.05 -2.91 -0.02 3.54 16 47 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.05 2.23 3.96 -2.39 -0.01 2.22 16 49 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -82.39 387.35 1.98 -80.42 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.59 Total: 31.13 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.78 Total: 16.74 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.46 Total: -125.62 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: 0.58 Total: -50.49 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.82 kcal Total: -82.39 1.98 -80.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570268945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.009 kcal (2) G-P(sol) polarization free energy of solvation -82.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds