Wall clock time and date at job start Wed Apr 1 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 109.47372 * 2 1 4 4 C 1.34781 * 120.00300 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99746 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99862 * 179.72655 * 4 3 2 7 7 C 1.50705 * 109.47042 * 180.27343 * 6 4 3 8 8 O 1.21287 * 119.99764 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00040 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99769 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46982 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.76539 * 65.74315 * 11 10 9 13 13 C 1.52783 * 109.77207 * 186.53676 * 11 10 9 14 14 C 1.50598 * 110.85785 * 167.07060 * 13 11 10 15 15 C 1.38985 * 117.61664 * 160.52969 * 14 13 11 16 16 C 1.37907 * 120.57796 * 178.80356 * 15 14 13 17 17 C 1.38264 * 119.82973 * 0.02562 * 16 15 14 18 18 C 1.37956 * 119.71553 * 0.26471 * 17 16 15 19 19 C 1.37665 * 122.85923 * 339.80639 * 14 13 11 20 20 C 1.50808 * 122.34962 * 1.52626 * 19 14 13 21 21 N 1.46685 * 109.67390 * 348.39208 * 20 19 14 22 22 C 1.36936 * 121.33888 * 224.43636 * 21 20 19 23 23 H 1.08002 * 120.00065 * 151.85146 * 22 21 20 24 24 C 1.38814 * 119.99415 * 331.85386 * 22 21 20 25 25 N 1.31610 * 120.00275 * 349.10545 * 24 22 21 26 26 Si 1.86800 * 119.99524 * 169.10637 * 24 22 21 27 27 H 1.48503 * 109.47289 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46967 * 119.99822 * 26 24 22 29 29 H 1.48499 * 109.47078 * 239.99763 * 26 24 22 30 30 H 1.08997 * 109.47357 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47148 * 299.99624 * 1 2 3 32 32 H 1.08996 * 109.47550 * 59.99539 * 1 2 3 33 33 H 1.09007 * 109.47148 * 240.00376 * 2 1 3 34 34 H 1.08996 * 109.47550 * 120.00461 * 2 1 3 35 35 H 0.97003 * 119.99819 * 0.02562 * 3 2 1 36 36 H 1.08999 * 109.47230 * 300.27270 * 6 4 3 37 37 H 1.09002 * 109.46929 * 60.27669 * 6 4 3 38 38 H 0.96998 * 119.99892 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.47400 * 300.00188 * 10 9 7 40 40 H 1.09010 * 109.46734 * 60.00064 * 10 9 7 41 41 H 1.09005 * 109.19757 * 287.42731 * 13 11 10 42 42 H 1.09004 * 109.20017 * 46.70963 * 13 11 10 43 43 H 1.07997 * 119.70559 * 358.77851 * 15 14 13 44 44 H 1.08002 * 120.08186 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.14366 * 180.28656 * 17 16 15 46 46 H 1.08006 * 119.74963 * 179.97438 * 18 17 16 47 47 H 1.09003 * 109.43785 * 228.33759 * 20 19 14 48 48 H 1.08997 * 109.44040 * 108.45961 * 20 19 14 49 49 H 0.97003 * 119.99867 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8457 3.0483 -0.0068 7 6 5.3528 3.0483 -0.0129 8 8 5.9592 1.9979 -0.0117 9 7 6.0266 4.2155 -0.0195 10 6 7.4916 4.2154 -0.0249 11 6 8.0016 5.6579 -0.0327 12 1 7.7306 6.1497 0.9016 13 6 9.5200 5.6684 -0.2019 14 6 10.0138 7.0535 -0.5268 15 6 11.3589 7.3259 -0.3075 16 6 11.8814 8.5665 -0.6069 17 6 11.0619 9.5500 -1.1295 18 6 9.7251 9.2843 -1.3426 19 6 9.1971 8.0368 -1.0380 20 6 7.7258 7.8164 -1.2845 21 7 7.4141 6.3877 -1.1684 22 6 6.6095 5.7579 -2.0800 23 1 6.7359 4.7030 -2.2740 24 6 5.6314 6.4755 -2.7548 25 7 5.3306 7.6983 -2.3723 26 14 4.7420 5.7053 -4.2057 27 1 5.2602 4.3321 -4.4318 28 1 3.2865 5.6434 -3.9179 29 1 4.9718 6.5279 -5.4205 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.3880 2.1185 0.0004 36 1 3.4788 3.5595 -0.8968 37 1 3.4860 3.5647 0.8832 38 1 5.5416 5.0555 -0.0201 39 1 7.8582 3.7048 0.8655 40 1 7.8516 3.6983 -0.9145 41 1 9.9861 5.3294 0.7233 42 1 9.7953 4.9908 -1.0102 43 1 12.0004 6.5593 0.1013 44 1 12.9279 8.7694 -0.4337 45 1 11.4667 10.5219 -1.3701 46 1 9.0844 10.0522 -1.7504 47 1 7.4697 8.1632 -2.2857 48 1 7.1470 8.3749 -0.5489 49 1 4.6468 8.1995 -2.8437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570268946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:19 Heat of formation + Delta-G solvation = -24.966547 kcal Electronic energy + Delta-G solvation = -30556.561335 eV Core-core repulsion = 26483.943403 eV Total energy + Delta-G solvation = -4072.617932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.93129 -39.35424 -38.30689 -36.50210 -35.12727 -33.60211 -32.90910 -31.56259 -31.36911 -30.32094 -29.42843 -28.67683 -25.65137 -25.27247 -23.13844 -22.83033 -21.56102 -21.27682 -20.62699 -19.63547 -19.01938 -17.04317 -16.89641 -16.25746 -16.02467 -15.84330 -15.42466 -15.31203 -14.96913 -14.71291 -14.54941 -14.24549 -14.11208 -13.60622 -13.42613 -13.22309 -12.99904 -12.80614 -12.59801 -12.53657 -12.40207 -12.26304 -11.99926 -11.87330 -11.60213 -11.56406 -11.40130 -11.09151 -10.94842 -10.85970 -10.71398 -10.50859 -10.20994 -10.01847 -9.80284 -9.68858 -9.01532 -8.91305 -8.80141 -8.25879 -8.16437 -7.86195 -6.84124 -5.95225 -3.39064 1.86204 1.93764 2.85879 3.09641 3.23601 3.33791 3.35317 3.40269 4.00371 4.28320 4.34244 4.73870 4.90998 4.91418 5.13357 5.14877 5.20059 5.27044 5.35628 5.36489 5.46165 5.46693 5.57262 5.59866 5.66328 5.73199 5.75058 5.86463 5.92324 5.94866 6.05254 6.10294 6.19524 6.32054 6.39228 6.47305 6.55098 6.62481 6.82707 6.93933 6.95104 7.12743 7.17002 7.23631 7.49239 7.54432 7.62671 7.70997 8.22922 8.33017 8.43725 8.99540 9.04872 9.64073 10.22844 11.13748 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002902 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.327381 B = 9644.990335 C =10995.325708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.741 5.741 4 C 0.513 3.487 5 O -0.494 6.494 6 C -0.166 4.166 7 C 0.509 3.491 8 O -0.523 6.523 9 N -0.697 5.697 10 C 0.139 3.861 11 C 0.158 3.842 12 H 0.042 0.958 13 C -0.091 4.091 14 C -0.067 4.067 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.078 4.078 20 C 0.208 3.792 21 N -0.589 5.589 22 C -0.241 4.241 23 H 0.073 0.927 24 C 0.006 3.994 25 N -0.906 5.906 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.288 1.288 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.414 0.586 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.042 0.958 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 -2.368 6.237 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.397 5.397 4 C 0.297 3.703 5 O -0.365 6.365 6 C -0.209 4.209 7 C 0.292 3.708 8 O -0.398 6.398 9 N -0.349 5.349 10 C 0.015 3.985 11 C 0.051 3.949 12 H 0.060 0.940 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.083 3.917 21 N -0.312 5.312 22 C -0.370 4.370 23 H 0.091 0.909 24 C -0.192 4.192 25 N -0.551 5.551 26 Si 0.723 3.277 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.215 1.215 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.252 0.748 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.114 0.886 48 H 0.060 0.940 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.326 -3.749 6.150 7.569 hybrid contribution -1.000 0.756 -0.997 1.601 sum -3.326 -2.993 5.153 6.825 Atomic orbital electron populations 1.21998 0.94660 1.03005 1.02483 1.21221 0.93905 0.83383 1.02277 1.46083 1.07153 1.08615 1.77871 1.20173 0.82019 0.91182 0.76888 1.90840 1.54391 1.45582 1.45712 1.21580 0.96531 0.96165 1.06604 1.19745 0.88541 0.84393 0.78117 1.90791 1.69373 1.30866 1.48811 1.45855 1.07155 1.08597 1.73336 1.21196 0.80213 0.96298 1.00840 1.20718 0.91032 0.91287 0.91836 0.94016 1.20888 0.97840 0.93510 1.00799 1.19494 0.92850 0.95608 0.98815 1.21131 0.95028 0.96822 1.01587 1.20849 0.99043 0.94064 1.01863 1.20948 0.94202 0.98790 1.00934 1.21116 0.95108 0.96971 1.01012 1.21013 0.99394 0.92432 0.95095 1.19775 0.84546 0.85211 1.02210 1.44054 1.55891 1.05608 1.25675 1.19205 1.08521 0.94586 1.14735 0.90904 1.25017 0.97217 0.96923 1.00049 1.69964 1.33374 1.10827 1.40886 0.86342 0.79289 0.79032 0.83012 1.20164 1.21582 1.21503 0.90999 0.92034 0.91973 0.91714 0.91732 0.76790 0.86042 0.86542 0.74834 0.92539 0.91684 0.91848 0.90776 0.87081 0.87141 0.87015 0.86493 0.88591 0.94018 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.03 37.15 0.37 -0.73 16 2 C 0.12 1.18 6.39 -4.05 -0.03 1.16 16 3 N -0.74 -8.33 5.56 -60.30 -0.33 -8.66 16 4 C 0.51 8.03 7.82 -10.98 -0.09 7.94 16 5 O -0.49 -10.24 14.18 -18.96 -0.27 -10.51 16 6 C -0.17 -2.37 6.19 -29.03 -0.18 -2.55 16 7 C 0.51 9.58 7.82 -10.98 -0.09 9.50 16 8 O -0.52 -12.01 14.18 -18.97 -0.27 -12.28 16 9 N -0.70 -12.76 4.01 -60.29 -0.24 -13.00 16 10 C 0.14 2.55 4.45 -4.04 -0.02 2.53 16 11 C 0.16 2.94 3.02 -67.64 -0.20 2.73 16 12 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 13 C -0.09 -1.54 5.21 -28.04 -0.15 -1.69 16 14 C -0.07 -1.20 5.76 -104.60 -0.60 -1.81 16 15 C -0.13 -2.00 9.59 -39.43 -0.38 -2.37 16 16 C -0.14 -2.05 10.04 -39.69 -0.40 -2.45 16 17 C -0.13 -1.97 10.05 -39.68 -0.40 -2.37 16 18 C -0.12 -2.12 9.62 -39.46 -0.38 -2.50 16 19 C -0.08 -1.50 5.82 -104.56 -0.61 -2.10 16 20 C 0.21 4.52 4.80 -5.04 -0.02 4.50 16 21 N -0.59 -12.82 2.85 -166.39 -0.47 -13.30 16 22 C -0.24 -5.72 6.96 -15.06 -0.10 -5.83 16 23 H 0.07 1.82 6.19 -52.49 -0.32 1.49 16 24 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 25 N -0.91 -22.94 11.07 55.49 0.61 -22.33 16 26 Si 0.89 20.14 29.57 -169.99 -5.03 15.12 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 36 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.41 7.68 7.34 -40.82 -0.30 7.38 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.32 7.31 -51.92 -0.38 0.94 16 41 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.07 1.30 8.01 -51.93 -0.42 0.89 16 43 H 0.11 1.49 8.05 -52.49 -0.42 1.07 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.88 8.05 -52.48 -0.42 1.46 16 47 H 0.10 2.35 6.46 -51.93 -0.34 2.02 16 48 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -31.87 395.24 -10.98 -42.84 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.58 Total: 12.14 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -3.36 Total: 4.03 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.44 Total: -57.29 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.54 Total: -22.79 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.87 -10.98 -42.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570268946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.877 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds