Wall clock time and date at job start Wed Apr 1 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 109.47372 * 2 1 4 4 C 1.34781 * 120.00300 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99746 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99862 * 179.72655 * 4 3 2 7 7 C 1.50705 * 109.47042 * 180.27343 * 6 4 3 8 8 O 1.21287 * 119.99764 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00040 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99769 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46982 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.76539 * 65.74315 * 11 10 9 13 13 C 1.52783 * 109.77207 * 186.53676 * 11 10 9 14 14 C 1.50598 * 110.85785 * 167.07060 * 13 11 10 15 15 C 1.38985 * 117.61664 * 160.52969 * 14 13 11 16 16 C 1.37907 * 120.57796 * 178.80356 * 15 14 13 17 17 C 1.38264 * 119.82973 * 0.02562 * 16 15 14 18 18 C 1.37956 * 119.71553 * 0.26471 * 17 16 15 19 19 C 1.37665 * 122.85923 * 339.80639 * 14 13 11 20 20 C 1.50808 * 122.34962 * 1.52626 * 19 14 13 21 21 N 1.46685 * 109.67390 * 348.39208 * 20 19 14 22 22 C 1.36936 * 121.33888 * 224.43636 * 21 20 19 23 23 H 1.08002 * 120.00065 * 151.85146 * 22 21 20 24 24 C 1.38814 * 119.99415 * 331.85386 * 22 21 20 25 25 N 1.31610 * 120.00275 * 349.10545 * 24 22 21 26 26 Si 1.86800 * 119.99524 * 169.10637 * 24 22 21 27 27 H 1.48503 * 109.47289 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46967 * 119.99822 * 26 24 22 29 29 H 1.48499 * 109.47078 * 239.99763 * 26 24 22 30 30 H 1.08997 * 109.47357 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47148 * 299.99624 * 1 2 3 32 32 H 1.08996 * 109.47550 * 59.99539 * 1 2 3 33 33 H 1.09007 * 109.47148 * 240.00376 * 2 1 3 34 34 H 1.08996 * 109.47550 * 120.00461 * 2 1 3 35 35 H 0.97003 * 119.99819 * 0.02562 * 3 2 1 36 36 H 1.08999 * 109.47230 * 300.27270 * 6 4 3 37 37 H 1.09002 * 109.46929 * 60.27669 * 6 4 3 38 38 H 0.96998 * 119.99892 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.47400 * 300.00188 * 10 9 7 40 40 H 1.09010 * 109.46734 * 60.00064 * 10 9 7 41 41 H 1.09005 * 109.19757 * 287.42731 * 13 11 10 42 42 H 1.09004 * 109.20017 * 46.70963 * 13 11 10 43 43 H 1.07997 * 119.70559 * 358.77851 * 15 14 13 44 44 H 1.08002 * 120.08186 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.14366 * 180.28656 * 17 16 15 46 46 H 1.08006 * 119.74963 * 179.97438 * 18 17 16 47 47 H 1.09003 * 109.43785 * 228.33759 * 20 19 14 48 48 H 1.08997 * 109.44040 * 108.45961 * 20 19 14 49 49 H 0.97003 * 119.99867 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8457 3.0483 -0.0068 7 6 5.3528 3.0483 -0.0129 8 8 5.9592 1.9979 -0.0117 9 7 6.0266 4.2155 -0.0195 10 6 7.4916 4.2154 -0.0249 11 6 8.0016 5.6579 -0.0327 12 1 7.7306 6.1497 0.9016 13 6 9.5200 5.6684 -0.2019 14 6 10.0138 7.0535 -0.5268 15 6 11.3589 7.3259 -0.3075 16 6 11.8814 8.5665 -0.6069 17 6 11.0619 9.5500 -1.1295 18 6 9.7251 9.2843 -1.3426 19 6 9.1971 8.0368 -1.0380 20 6 7.7258 7.8164 -1.2845 21 7 7.4141 6.3877 -1.1684 22 6 6.6095 5.7579 -2.0800 23 1 6.7359 4.7030 -2.2740 24 6 5.6314 6.4755 -2.7548 25 7 5.3306 7.6983 -2.3723 26 14 4.7420 5.7053 -4.2057 27 1 5.2602 4.3321 -4.4318 28 1 3.2865 5.6434 -3.9179 29 1 4.9718 6.5279 -5.4205 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.3880 2.1185 0.0004 36 1 3.4788 3.5595 -0.8968 37 1 3.4860 3.5647 0.8832 38 1 5.5416 5.0555 -0.0201 39 1 7.8582 3.7048 0.8655 40 1 7.8516 3.6983 -0.9145 41 1 9.9861 5.3294 0.7233 42 1 9.7953 4.9908 -1.0102 43 1 12.0004 6.5593 0.1013 44 1 12.9279 8.7694 -0.4337 45 1 11.4667 10.5219 -1.3701 46 1 9.0844 10.0522 -1.7504 47 1 7.4697 8.1632 -2.2857 48 1 7.1470 8.3749 -0.5489 49 1 4.6468 8.1995 -2.8437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570268946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:17 Heat of formation + Delta-G solvation = -44.262028 kcal Electronic energy + Delta-G solvation = -30557.398050 eV Core-core repulsion = 26483.943403 eV Total energy + Delta-G solvation = -4073.454647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.28684 -40.71094 -39.68321 -38.00654 -36.19876 -35.22491 -34.46874 -32.98320 -32.61266 -31.67265 -30.71427 -29.95707 -27.34276 -26.66096 -24.52319 -23.96226 -22.88134 -22.61926 -21.90503 -21.05013 -20.53638 -18.52830 -18.21360 -17.75388 -17.37035 -17.03518 -16.78392 -16.61710 -16.31122 -16.04677 -15.96913 -15.69411 -15.46284 -15.11277 -14.78107 -14.53847 -14.44209 -14.25036 -13.99927 -13.76157 -13.65007 -13.26170 -13.23751 -13.14341 -12.87176 -12.73699 -12.67819 -12.57175 -12.49484 -12.32925 -12.24095 -12.13437 -11.84906 -11.58833 -11.29047 -11.11272 -10.63890 -10.38768 -10.06036 -9.74903 -9.52369 -9.24840 -8.63857 -7.83849 -5.28137 0.60011 0.64197 1.40601 1.49194 1.56239 1.64982 1.85565 2.00406 2.48817 2.70309 2.99819 3.34127 3.52894 3.66198 3.87282 4.05210 4.12646 4.20720 4.21637 4.25056 4.26385 4.38065 4.41684 4.44844 4.46737 4.52809 4.54803 4.70740 4.73869 4.84551 4.94041 4.94166 4.96604 5.06477 5.22922 5.24760 5.26740 5.28891 5.45697 5.51308 5.53950 5.68425 5.71893 5.76486 5.77023 6.03456 6.29245 6.38881 6.58033 6.83104 7.17956 7.31365 7.52716 7.82973 8.39596 9.23399 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002902 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.327381 B = 9644.990335 C =10995.325708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.721 5.721 4 C 0.509 3.491 5 O -0.554 6.554 6 C -0.158 4.158 7 C 0.502 3.498 8 O -0.568 6.568 9 N -0.694 5.694 10 C 0.144 3.856 11 C 0.162 3.838 12 H 0.046 0.954 13 C -0.086 4.086 14 C -0.084 4.084 15 C -0.129 4.129 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.108 4.108 20 C 0.224 3.776 21 N -0.599 5.599 22 C -0.230 4.230 23 H 0.059 0.941 24 C -0.027 4.027 25 N -0.925 5.925 26 Si 0.938 3.062 27 H -0.288 1.288 28 H -0.277 1.277 29 H -0.299 1.299 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.414 0.586 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -1.698 7.281 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.376 5.376 4 C 0.294 3.706 5 O -0.430 6.430 6 C -0.201 4.201 7 C 0.287 3.713 8 O -0.447 6.447 9 N -0.345 5.345 10 C 0.019 3.981 11 C 0.056 3.944 12 H 0.064 0.936 13 C -0.125 4.125 14 C -0.084 4.084 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.110 4.110 20 C 0.099 3.901 21 N -0.323 5.323 22 C -0.360 4.360 23 H 0.077 0.923 24 C -0.224 4.224 25 N -0.571 5.571 26 Si 0.768 3.232 27 H -0.214 1.214 28 H -0.203 1.203 29 H -0.227 1.227 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.036 0.964 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.970 -3.044 7.208 8.069 hybrid contribution -1.038 0.570 -1.306 1.763 sum -3.008 -2.473 5.903 7.071 Atomic orbital electron populations 1.21940 0.91426 1.04217 1.03436 1.21354 0.96435 0.82427 1.01094 1.45950 1.06040 1.09937 1.75693 1.20432 0.82939 0.91010 0.76179 1.90821 1.56165 1.47151 1.48864 1.21607 0.93083 0.96129 1.09244 1.20480 0.90445 0.83511 0.76819 1.90773 1.70765 1.32299 1.50822 1.45882 1.07150 1.08599 1.72886 1.21133 0.80559 0.96036 1.00354 1.20807 0.92161 0.90728 0.90719 0.93599 1.20832 0.96349 0.93370 1.01939 1.19653 0.94055 0.95388 0.99346 1.21431 0.94117 0.98124 1.00966 1.21317 1.00704 0.93155 0.99750 1.21305 0.93052 1.00402 0.99730 1.21237 0.96538 0.96309 1.01441 1.20809 0.97972 0.94242 0.97948 1.19345 0.86568 0.84774 0.99440 1.44175 1.55866 1.05813 1.26477 1.19112 1.08169 0.93880 1.14825 0.92320 1.25387 0.98126 0.97272 1.01582 1.70073 1.33893 1.11517 1.41617 0.85666 0.79246 0.77397 0.80882 1.21377 1.20262 1.22667 0.89724 0.90739 0.91259 0.93343 0.92671 0.74583 0.84492 0.82416 0.74856 0.91024 0.94088 0.88820 0.91716 0.84400 0.83478 0.83956 0.86588 0.92142 0.96416 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.03 71.98 0.72 -0.97 16 2 C 0.11 2.17 6.39 86.38 0.55 2.72 16 3 N -0.72 -15.19 5.56 -463.06 -2.57 -17.76 16 4 C 0.51 15.76 7.82 87.66 0.69 16.45 16 5 O -0.55 -23.67 14.18 20.40 0.29 -23.38 16 6 C -0.16 -4.35 6.19 29.10 0.18 -4.17 16 7 C 0.50 19.08 7.82 87.66 0.69 19.77 16 8 O -0.57 -26.89 14.18 20.39 0.29 -26.60 16 9 N -0.69 -25.64 4.01 -463.04 -1.86 -27.50 16 10 C 0.14 5.35 4.45 86.38 0.38 5.74 16 11 C 0.16 6.03 3.02 44.78 0.14 6.17 16 12 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 13 C -0.09 -2.83 5.21 29.74 0.15 -2.67 16 14 C -0.08 -2.91 5.76 -19.85 -0.11 -3.02 16 15 C -0.13 -3.61 9.59 22.37 0.21 -3.39 16 16 C -0.13 -3.32 10.04 22.20 0.22 -3.09 16 17 C -0.13 -3.46 10.05 22.21 0.22 -3.24 16 18 C -0.14 -4.63 9.62 22.35 0.22 -4.41 16 19 C -0.11 -4.19 5.82 -19.82 -0.12 -4.30 16 20 C 0.22 10.14 4.80 85.63 0.41 10.56 16 21 N -0.60 -26.80 2.85 -680.32 -1.94 -28.75 16 22 C -0.23 -11.20 6.96 84.03 0.58 -10.61 16 23 H 0.06 3.03 6.19 -2.91 -0.02 3.01 16 24 C -0.03 -1.36 5.08 84.86 0.43 -0.93 16 25 N -0.92 -48.08 11.07 21.65 0.24 -47.84 16 26 Si 0.94 42.03 29.57 68.60 2.03 44.06 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 29 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.42 5.65 8.47 -92.71 -0.79 4.86 16 36 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.41 15.40 7.34 -92.71 -0.68 14.72 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.73 7.31 -2.38 -0.02 1.71 16 41 H 0.09 2.50 8.11 -2.38 -0.02 2.48 16 42 H 0.06 2.25 8.01 -2.38 -0.02 2.23 16 43 H 0.14 3.10 8.05 -2.91 -0.02 3.08 16 44 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 46 H 0.12 3.81 8.05 -2.91 -0.02 3.78 16 47 H 0.06 3.12 6.46 -2.39 -0.02 3.11 16 48 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 Total: -1.00 -73.34 395.24 1.56 -71.79 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.49 Total: 35.41 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 5.57 Total: 20.57 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -6.13 Total: -121.84 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: 0.58 Total: -49.99 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -73.34 1.56 -71.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570268946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.526 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds