Wall clock time and date at job start Wed Apr 1 2020 03:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47291 * 2 1 4 4 C 1.36933 * 119.99857 * 275.31319 * 3 2 1 5 5 H 1.08001 * 120.00325 * 37.57612 * 4 3 2 6 6 C 1.38816 * 120.00126 * 217.57202 * 4 3 2 7 7 N 1.31620 * 119.99479 * 21.43309 * 6 4 3 8 8 Si 1.86798 * 120.00219 * 201.43457 * 6 4 3 9 9 H 1.48495 * 109.47082 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46825 * 120.00061 * 8 6 4 11 11 H 1.48492 * 109.47058 * 239.99747 * 8 6 4 12 12 C 1.46497 * 119.99995 * 95.31080 * 3 2 1 13 13 C 1.53004 * 109.47151 * 270.00360 * 12 3 2 14 14 C 1.53003 * 109.47023 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.46911 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00114 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.47598 * 120.00533 * 179.97438 * 16 15 14 19 19 C 1.39770 * 120.07757 * 0.02679 * 18 16 15 20 20 C 1.37640 * 119.93965 * 179.97438 * 19 18 16 21 21 C 1.39316 * 120.06404 * 359.76569 * 20 19 18 22 22 C 1.39008 * 120.08471 * 0.48016 * 21 20 19 23 23 C 1.37667 * 120.14895 * 359.51288 * 22 21 20 24 24 C 1.50690 * 119.78573 * 179.76050 * 22 21 20 25 25 C 1.52907 * 109.48932 * 325.83931 * 24 22 21 26 26 C 1.50488 * 109.87500 * 48.53241 * 25 24 22 27 27 O 1.21274 * 119.60542 * 144.81974 * 26 25 24 28 28 N 1.34530 * 120.80078 * 324.79108 * 26 25 24 29 29 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46663 * 299.99462 * 1 2 3 31 31 H 1.09001 * 109.47331 * 59.99912 * 1 2 3 32 32 H 1.09003 * 109.47347 * 240.00036 * 2 1 3 33 33 H 1.09001 * 109.47331 * 120.00088 * 2 1 3 34 34 H 0.97005 * 119.99603 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47438 * 150.00396 * 12 3 2 36 36 H 1.08999 * 109.47099 * 30.00309 * 12 3 2 37 37 H 1.09001 * 109.47148 * 60.00328 * 13 12 3 38 38 H 1.08999 * 109.47078 * 299.99962 * 13 12 3 39 39 H 1.08995 * 109.47112 * 59.99744 * 14 13 12 40 40 H 1.08996 * 109.46786 * 299.99500 * 14 13 12 41 41 H 0.97008 * 120.00450 * 359.97438 * 15 14 13 42 42 H 1.07993 * 120.03154 * 359.94782 * 19 18 16 43 43 H 1.08006 * 119.95197 * 180.02562 * 20 19 18 44 44 H 1.08000 * 120.03540 * 180.26288 * 23 22 21 45 45 H 1.09005 * 109.46500 * 205.83703 * 24 22 21 46 46 H 1.08999 * 109.46700 * 85.84709 * 24 22 21 47 47 H 1.09004 * 109.40587 * 288.40056 * 25 24 22 48 48 H 1.09005 * 109.40631 * 168.65173 * 25 24 22 49 49 H 0.97001 * 119.72212 * 180.78117 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7980 -0.6491 8 14 3.0991 4.2797 -2.6583 9 1 1.7770 4.2143 -3.3311 10 1 3.2548 5.6024 -2.0013 11 1 4.1764 4.0966 -3.6638 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5135 3.4191 3.1556 15 7 0.3353 4.0951 3.7043 16 6 0.4251 4.7662 4.8696 17 8 1.4841 4.8109 5.4654 18 6 -0.7617 5.4478 5.4222 19 6 -1.9798 5.3980 4.7385 20 6 -3.0849 6.0342 5.2567 21 6 -2.9914 6.7233 6.4638 22 6 -1.7797 6.7783 7.1428 23 6 -0.6705 6.1441 6.6302 24 6 -1.6849 7.5302 8.4453 25 6 -2.6126 8.7449 8.4018 26 6 -3.9751 8.3309 7.9153 27 8 -4.9624 8.8698 8.3688 28 7 -4.1113 7.3707 6.9830 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4032 -0.7831 35 1 3.1617 2.7641 1.0860 36 1 2.7256 1.2833 1.9721 37 1 0.3542 2.0067 2.0140 38 1 0.7903 3.4876 1.1278 39 1 2.3018 4.1505 2.9779 40 1 1.8660 2.6700 3.8646 41 1 -0.5095 4.0598 3.2289 42 1 -2.0538 4.8611 3.8044 43 1 -4.0264 5.9954 4.7288 44 1 0.2690 6.1845 7.1614 45 1 -0.6582 7.8625 8.5990 46 1 -1.9815 6.8757 9.2649 47 1 -2.1983 9.4929 7.7258 48 1 -2.6990 9.1706 9.4016 49 1 -4.9965 7.1241 6.6724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660557759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:34 Heat of formation + Delta-G solvation = -41.418084 kcal Electronic energy + Delta-G solvation = -29101.382590 eV Core-core repulsion = 25028.051266 eV Total energy + Delta-G solvation = -4073.331324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.50364 -39.94462 -38.59376 -36.47725 -35.60324 -34.91185 -34.46167 -31.88358 -31.53435 -30.59474 -29.95394 -28.46858 -25.58972 -25.12459 -24.17577 -23.38741 -22.96242 -21.11217 -21.02207 -20.16734 -19.32137 -18.49748 -17.64085 -17.32205 -16.74768 -16.45726 -15.74283 -15.44562 -15.42864 -14.91886 -14.73298 -14.54831 -14.20756 -14.13379 -14.06073 -13.72691 -13.59081 -13.46714 -13.25592 -12.94061 -12.62587 -12.39280 -12.27018 -11.96011 -11.63290 -11.54527 -11.39638 -11.19944 -11.09062 -11.01403 -10.78657 -10.60466 -10.53221 -10.46660 -10.09217 -9.89465 -9.65897 -9.55991 -9.34139 -8.93624 -8.49456 -8.47864 -6.58391 -5.80369 -3.39618 0.37543 0.87166 1.92930 2.49957 2.75373 3.22452 3.33068 3.42156 3.43846 3.57305 3.82683 4.10853 4.18178 4.40738 4.45516 4.59456 4.63159 4.72804 4.84220 4.93989 5.20745 5.23480 5.26689 5.37466 5.42288 5.50459 5.61077 5.63141 5.72843 5.82058 5.95982 5.98358 6.06094 6.14373 6.25851 6.28782 6.33400 6.40269 6.44456 6.56333 6.63326 6.72522 6.74958 6.89382 7.06847 7.15495 7.44621 7.58856 7.66037 7.81046 8.25806 8.50768 9.18065 9.80351 10.39245 11.19026 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.001928 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.054950 B =14519.983494 C =14725.893415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.120 3.880 15 N -0.719 5.719 16 C 0.553 3.447 17 O -0.541 6.541 18 C -0.149 4.149 19 C -0.054 4.054 20 C -0.158 4.158 21 C 0.180 3.820 22 C -0.135 4.135 23 C -0.023 4.023 24 C -0.077 4.077 25 C -0.139 4.139 26 C 0.522 3.478 27 O -0.527 6.527 28 N -0.662 5.662 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.144 0.856 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.111 0.889 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 7.419 16.449 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.188 4.188 14 C -0.003 4.003 15 N -0.370 5.370 16 C 0.340 3.660 17 O -0.420 6.420 18 C -0.153 4.153 19 C -0.074 4.074 20 C -0.178 4.178 21 C 0.083 3.917 22 C -0.137 4.137 23 C -0.042 4.042 24 C -0.114 4.114 25 C -0.179 4.179 26 C 0.311 3.689 27 O -0.402 6.402 28 N -0.306 5.306 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.129 0.871 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.216 7.910 17.197 23.673 hybrid contribution -0.937 0.551 -1.236 1.646 sum -15.152 8.461 15.961 23.578 Atomic orbital electron populations 1.22367 1.00189 0.98885 1.01072 1.20851 0.91659 0.87419 0.98738 1.43747 1.76042 1.08180 1.02495 1.19010 1.04635 1.21140 0.94154 0.92305 1.25196 0.94235 1.01338 0.98059 1.70010 1.03203 1.37211 1.42356 0.86373 0.77656 0.82331 0.81289 1.20134 1.21411 1.21630 1.20793 0.94411 0.96672 0.85770 1.22549 1.02451 0.99883 0.93869 1.21524 0.86914 0.96180 0.95680 1.46110 1.14675 1.53316 1.22927 1.18139 0.87854 0.78860 0.81117 1.90785 1.29684 1.61573 1.59935 1.20003 0.94145 1.03510 0.97657 1.21175 0.91215 0.96141 0.98820 1.20743 1.00152 1.02135 0.94791 1.17805 0.86730 0.94219 0.92966 1.19409 0.92444 1.03684 0.98196 1.20966 0.97981 0.91940 0.93317 1.20448 1.01277 0.95100 0.94558 1.21724 0.91553 0.99844 1.04771 1.20840 0.92366 0.78035 0.77651 1.90792 1.40595 1.53078 1.55729 1.43579 1.09107 1.36985 1.40900 0.94642 0.93822 0.93281 0.93895 0.94827 0.93548 0.88720 0.95638 0.93029 0.91698 0.91301 0.91780 0.76774 0.84736 0.84670 0.83791 0.88536 0.89660 0.87567 0.87067 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.21 37.16 0.38 -2.48 16 2 C 0.14 2.85 6.44 -4.04 -0.03 2.83 16 3 N -0.58 -13.85 2.43 -173.24 -0.42 -14.27 16 4 C -0.26 -6.82 9.45 -15.06 -0.14 -6.96 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.87 11.47 55.49 0.64 -24.24 16 8 Si 0.89 20.99 29.60 -169.99 -5.03 15.95 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.15 3.31 5.33 -4.04 -0.02 3.29 16 13 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 14 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 15 N -0.72 -9.50 5.51 -61.33 -0.34 -9.84 16 16 C 0.55 7.72 7.76 -12.44 -0.10 7.63 16 17 O -0.54 -9.52 16.34 5.29 0.09 -9.43 16 18 C -0.15 -1.58 5.88 -104.95 -0.62 -2.19 16 19 C -0.05 -0.44 9.53 -39.23 -0.37 -0.81 16 20 C -0.16 -1.09 9.90 -39.40 -0.39 -1.48 16 21 C 0.18 1.34 6.51 -83.74 -0.55 0.79 16 22 C -0.13 -1.03 5.65 -104.55 -0.59 -1.62 16 23 C -0.02 -0.21 9.22 -39.23 -0.36 -0.57 16 24 C -0.08 -0.41 6.00 -27.94 -0.17 -0.58 16 25 C -0.14 -0.78 6.08 -28.03 -0.17 -0.95 16 26 C 0.52 4.39 7.72 -11.20 -0.09 4.31 16 27 O -0.53 -6.32 17.91 5.56 0.10 -6.22 16 28 N -0.66 -4.63 5.34 -9.98 -0.05 -4.68 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.72 6.64 -51.93 -0.34 0.38 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.03 0.64 7.83 -51.93 -0.41 0.24 16 34 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.10 2.40 5.52 -51.93 -0.29 2.11 16 36 H 0.03 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.05 0.85 6.64 -51.93 -0.34 0.50 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.17 6.49 -40.82 -0.27 3.91 16 42 H 0.13 0.86 6.39 -52.49 -0.34 0.52 16 43 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.14 1.35 7.64 -52.49 -0.40 0.95 16 45 H 0.10 0.39 8.06 -51.93 -0.42 -0.03 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.41 2.27 8.82 -40.82 -0.36 1.91 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -33.17 401.27 -9.79 -42.96 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.35 Total: 3.13 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -3.47 Total: 0.59 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.18 Total: -53.03 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.19 Total: -15.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.17 -9.79 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660557759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.541 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds