Wall clock time and date at job start Wed Apr 1 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47291 * 2 1 4 4 C 1.36933 * 119.99857 * 275.31319 * 3 2 1 5 5 H 1.08001 * 120.00325 * 37.57612 * 4 3 2 6 6 C 1.38816 * 120.00126 * 217.57202 * 4 3 2 7 7 N 1.31620 * 119.99479 * 21.43309 * 6 4 3 8 8 Si 1.86798 * 120.00219 * 201.43457 * 6 4 3 9 9 H 1.48495 * 109.47082 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46825 * 120.00061 * 8 6 4 11 11 H 1.48492 * 109.47058 * 239.99747 * 8 6 4 12 12 C 1.46497 * 119.99995 * 95.31080 * 3 2 1 13 13 C 1.53004 * 109.47151 * 270.00360 * 12 3 2 14 14 C 1.53003 * 109.47023 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.46911 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00114 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.47598 * 120.00533 * 179.97438 * 16 15 14 19 19 C 1.39770 * 120.07757 * 0.02679 * 18 16 15 20 20 C 1.37640 * 119.93965 * 179.97438 * 19 18 16 21 21 C 1.39316 * 120.06404 * 359.76569 * 20 19 18 22 22 C 1.39008 * 120.08471 * 0.48016 * 21 20 19 23 23 C 1.37667 * 120.14895 * 359.51288 * 22 21 20 24 24 C 1.50690 * 119.78573 * 179.76050 * 22 21 20 25 25 C 1.52907 * 109.48932 * 325.83931 * 24 22 21 26 26 C 1.50488 * 109.87500 * 48.53241 * 25 24 22 27 27 O 1.21274 * 119.60542 * 144.81974 * 26 25 24 28 28 N 1.34530 * 120.80078 * 324.79108 * 26 25 24 29 29 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46663 * 299.99462 * 1 2 3 31 31 H 1.09001 * 109.47331 * 59.99912 * 1 2 3 32 32 H 1.09003 * 109.47347 * 240.00036 * 2 1 3 33 33 H 1.09001 * 109.47331 * 120.00088 * 2 1 3 34 34 H 0.97005 * 119.99603 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47438 * 150.00396 * 12 3 2 36 36 H 1.08999 * 109.47099 * 30.00309 * 12 3 2 37 37 H 1.09001 * 109.47148 * 60.00328 * 13 12 3 38 38 H 1.08999 * 109.47078 * 299.99962 * 13 12 3 39 39 H 1.08995 * 109.47112 * 59.99744 * 14 13 12 40 40 H 1.08996 * 109.46786 * 299.99500 * 14 13 12 41 41 H 0.97008 * 120.00450 * 359.97438 * 15 14 13 42 42 H 1.07993 * 120.03154 * 359.94782 * 19 18 16 43 43 H 1.08006 * 119.95197 * 180.02562 * 20 19 18 44 44 H 1.08000 * 120.03540 * 180.26288 * 23 22 21 45 45 H 1.09005 * 109.46500 * 205.83703 * 24 22 21 46 46 H 1.08999 * 109.46700 * 85.84709 * 24 22 21 47 47 H 1.09004 * 109.40587 * 288.40056 * 25 24 22 48 48 H 1.09005 * 109.40631 * 168.65173 * 25 24 22 49 49 H 0.97001 * 119.72212 * 180.78117 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7980 -0.6491 8 14 3.0991 4.2797 -2.6583 9 1 1.7770 4.2143 -3.3311 10 1 3.2548 5.6024 -2.0013 11 1 4.1764 4.0966 -3.6638 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5135 3.4191 3.1556 15 7 0.3353 4.0951 3.7043 16 6 0.4251 4.7662 4.8696 17 8 1.4841 4.8109 5.4654 18 6 -0.7617 5.4478 5.4222 19 6 -1.9798 5.3980 4.7385 20 6 -3.0849 6.0342 5.2567 21 6 -2.9914 6.7233 6.4638 22 6 -1.7797 6.7783 7.1428 23 6 -0.6705 6.1441 6.6302 24 6 -1.6849 7.5302 8.4453 25 6 -2.6126 8.7449 8.4018 26 6 -3.9751 8.3309 7.9153 27 8 -4.9624 8.8698 8.3688 28 7 -4.1113 7.3707 6.9830 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4032 -0.7831 35 1 3.1617 2.7641 1.0860 36 1 2.7256 1.2833 1.9721 37 1 0.3542 2.0067 2.0140 38 1 0.7903 3.4876 1.1278 39 1 2.3018 4.1505 2.9779 40 1 1.8660 2.6700 3.8646 41 1 -0.5095 4.0598 3.2289 42 1 -2.0538 4.8611 3.8044 43 1 -4.0264 5.9954 4.7288 44 1 0.2690 6.1845 7.1614 45 1 -0.6582 7.8625 8.5990 46 1 -1.9815 6.8757 9.2649 47 1 -2.1983 9.4929 7.7258 48 1 -2.6990 9.1706 9.4016 49 1 -4.9965 7.1241 6.6724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660557759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:33 Heat of formation + Delta-G solvation = -62.385054 kcal Electronic energy + Delta-G solvation = -29102.291786 eV Core-core repulsion = 25028.051266 eV Total energy + Delta-G solvation = -4074.240520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.13835 -40.91549 -39.42661 -38.15512 -36.33263 -36.22086 -35.02446 -33.79563 -32.86186 -31.19859 -30.88752 -30.00959 -27.15450 -25.66245 -25.57784 -24.39245 -23.71416 -22.52219 -22.14448 -21.72386 -20.12786 -19.13244 -18.61622 -18.36705 -18.07540 -17.21704 -17.03024 -16.71916 -16.53011 -16.04765 -15.75594 -15.64314 -15.45754 -15.15248 -14.96770 -14.74252 -14.66670 -14.32431 -14.18791 -14.10141 -14.02960 -13.49655 -13.22303 -13.16144 -12.88126 -12.75716 -12.70217 -12.56824 -12.51242 -12.28447 -12.11042 -12.01907 -11.90683 -11.78070 -11.44021 -11.22798 -11.18933 -11.03317 -10.48413 -10.14272 -9.93507 -9.15169 -8.52561 -7.78842 -5.42921 -0.34335 0.26988 1.24691 1.45213 1.49391 1.58468 1.89287 1.93762 2.15490 2.52686 2.79376 3.26052 3.27993 3.58594 3.64139 3.68880 3.74648 3.94297 4.11600 4.19148 4.21635 4.26443 4.30002 4.42649 4.48100 4.57337 4.76293 4.77313 4.79880 4.85051 4.88238 4.91376 5.00094 5.03210 5.05441 5.07231 5.14057 5.19155 5.30854 5.36334 5.42546 5.49474 5.56708 5.63125 5.69945 5.72414 5.87567 6.02902 6.50515 6.54852 6.84986 7.19655 7.21564 7.91265 8.43615 9.15715 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.001928 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.054950 B =14519.983494 C =14725.893415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.260 4.260 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.290 1.290 11 H -0.294 1.294 12 C 0.150 3.850 13 C -0.123 4.123 14 C 0.133 3.867 15 N -0.710 5.710 16 C 0.552 3.448 17 O -0.586 6.586 18 C -0.168 4.168 19 C -0.051 4.051 20 C -0.150 4.150 21 C 0.180 3.820 22 C -0.134 4.134 23 C -0.030 4.030 24 C -0.075 4.075 25 C -0.135 4.135 26 C 0.520 3.480 27 O -0.567 6.567 28 N -0.654 5.654 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.250 0.750 35 H 0.059 0.941 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.413 0.587 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.137 0.863 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.117 0.883 48 H 0.124 0.876 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 7.672 16.787 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.391 4.391 5 H 0.073 0.927 6 C -0.235 4.235 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.023 3.977 13 C -0.163 4.163 14 C 0.009 3.991 15 N -0.362 5.362 16 C 0.341 3.659 17 O -0.468 6.468 18 C -0.172 4.172 19 C -0.070 4.070 20 C -0.170 4.170 21 C 0.083 3.917 22 C -0.136 4.136 23 C -0.050 4.050 24 C -0.112 4.112 25 C -0.174 4.174 26 C 0.310 3.690 27 O -0.446 6.446 28 N -0.297 5.297 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.250 0.750 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.155 0.845 45 H 0.130 0.870 46 H 0.111 0.889 47 H 0.135 0.865 48 H 0.142 0.858 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -16.845 8.133 17.512 25.623 hybrid contribution -0.169 0.400 -1.310 1.380 sum -17.014 8.533 16.202 24.996 Atomic orbital electron populations 1.22164 0.97155 1.00759 1.00908 1.21006 0.93932 0.85717 0.98573 1.43990 1.76440 1.09544 1.02274 1.19203 1.03996 1.21045 0.94842 0.92677 1.25853 0.94075 1.03414 1.00141 1.70140 1.03828 1.38060 1.44210 0.85444 0.77726 0.79635 0.79057 1.18990 1.21706 1.22094 1.20699 0.95354 0.96112 0.85534 1.22171 1.00683 0.99588 0.93861 1.21158 0.87432 0.95555 0.94998 1.45894 1.14420 1.52920 1.22971 1.18669 0.88370 0.78224 0.80595 1.90757 1.31671 1.63220 1.61137 1.19807 0.93682 1.04979 0.98778 1.21346 0.90404 0.96020 0.99210 1.21024 1.00850 1.00771 0.94380 1.17948 0.86650 0.93918 0.93166 1.19575 0.91917 1.03217 0.98933 1.20966 0.98407 0.92421 0.93201 1.20511 1.02193 0.94913 0.93545 1.21772 0.89864 1.00098 1.05708 1.21336 0.92884 0.77570 0.77191 1.90778 1.42063 1.54553 1.57168 1.43538 1.09458 1.36411 1.40342 0.91745 0.92841 0.94488 0.95390 0.93732 0.94062 0.92300 0.95427 0.90965 0.92778 0.93711 0.92017 0.74951 0.82910 0.81836 0.84477 0.87006 0.88943 0.86476 0.85776 0.74109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 10.21 71.98 0.73 -4.07 16 2 C 0.13 5.29 6.44 86.38 0.56 5.85 16 3 N -0.60 -28.43 2.43 -702.00 -1.71 -30.14 16 4 C -0.26 -13.71 9.45 84.03 0.79 -12.91 16 5 H 0.06 2.90 7.92 -2.91 -0.02 2.88 16 6 C -0.04 -2.03 4.95 84.86 0.42 -1.61 16 7 N -0.92 -52.97 11.47 21.65 0.25 -52.72 16 8 Si 0.95 43.60 29.60 68.60 2.03 45.63 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.15 6.64 5.33 86.38 0.46 7.10 16 13 C -0.12 -4.23 5.65 30.60 0.17 -4.06 16 14 C 0.13 4.26 5.67 86.38 0.49 4.75 16 15 N -0.71 -18.13 5.51 -466.22 -2.57 -20.70 16 16 C 0.55 15.27 7.76 86.71 0.67 15.95 16 17 O -0.59 -21.14 16.34 -4.00 -0.07 -21.21 16 18 C -0.17 -3.36 5.88 -20.08 -0.12 -3.48 16 19 C -0.05 -0.69 9.53 22.50 0.21 -0.47 16 20 C -0.15 -1.58 9.90 22.39 0.22 -1.36 16 21 C 0.18 2.22 6.51 38.39 0.25 2.47 16 22 C -0.13 -1.79 5.65 -19.82 -0.11 -1.91 16 23 C -0.03 -0.54 9.22 22.50 0.21 -0.34 16 24 C -0.07 -0.65 6.00 29.81 0.18 -0.47 16 25 C -0.14 -1.22 6.08 29.75 0.18 -1.04 16 26 C 0.52 7.85 7.72 87.63 0.68 8.53 16 27 O -0.57 -13.07 17.91 -3.01 -0.05 -13.12 16 28 N -0.65 -7.66 5.34 -304.02 -1.62 -9.29 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.59 6.64 -2.39 -0.02 1.57 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.04 1.65 7.83 -2.39 -0.02 1.63 16 34 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 35 H 0.06 3.09 5.52 -2.39 -0.01 3.07 16 36 H 0.03 1.17 7.86 -2.39 -0.02 1.16 16 37 H 0.07 2.20 6.64 -2.39 -0.02 2.18 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.41 7.82 6.49 -92.70 -0.60 7.22 16 42 H 0.15 1.44 6.39 -2.91 -0.02 1.42 16 43 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 44 H 0.14 2.58 7.64 -2.91 -0.02 2.56 16 45 H 0.11 0.66 8.06 -2.38 -0.02 0.64 16 46 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.42 3.65 8.82 -92.71 -0.82 2.83 16 Total: -1.00 -73.55 401.27 1.83 -71.72 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.43 Total: 16.88 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.00 Total: 12.93 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -5.65 Total: -112.84 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.12 Total: -34.33 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.55 1.83 -71.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660557759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.338 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds