Wall clock time and date at job start Wed Apr 1 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47373 * 2 1 4 4 C 1.35678 * 117.00055 * 180.02562 * 3 2 1 5 5 C 1.38920 * 119.68148 * 180.02562 * 4 3 2 6 6 C 1.38379 * 119.10746 * 180.02562 * 5 4 3 7 7 C 1.38826 * 118.48891 * 359.95863 * 6 5 4 8 8 C 1.38053 * 119.28804 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.58174 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47101 * 125.00065 * 9 8 7 11 11 O 1.21282 * 119.99552 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99788 * 179.97438 * 10 9 8 13 13 C 1.47385 * 135.85491 * 359.63753 * 12 10 9 14 14 C 1.52076 * 87.40979 * 154.38224 * 13 12 10 15 15 C 1.47389 * 135.85002 * 179.97438 * 12 10 9 16 16 C 1.53507 * 117.21428 * 267.27775 * 14 13 12 17 17 C 1.54630 * 102.70282 * 262.93094 * 16 14 13 18 18 N 1.47146 * 107.37924 * 339.38278 * 17 16 14 19 19 C 1.36940 * 125.58057 * 179.12317 * 18 17 16 20 20 H 1.07995 * 119.99837 * 174.73885 * 19 18 17 21 21 C 1.38808 * 120.00129 * 354.73350 * 19 18 17 22 22 N 1.31628 * 119.99738 * 7.05825 * 21 19 18 23 23 Si 1.86801 * 120.00164 * 187.05371 * 21 19 18 24 24 H 1.48505 * 109.46655 * 94.98969 * 23 21 19 25 25 H 1.48496 * 109.47500 * 214.98653 * 23 21 19 26 26 H 1.48499 * 109.46745 * 334.99214 * 23 21 19 27 27 C 1.47760 * 108.83774 * 359.08842 * 18 17 16 28 28 N 1.31967 * 120.83297 * 0.02562 * 8 7 6 29 29 H 1.09000 * 109.47449 * 60.00326 * 1 2 3 30 30 H 1.09007 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47432 * 300.00264 * 1 2 3 32 32 H 1.09006 * 109.47284 * 240.00030 * 2 1 3 33 33 H 1.09003 * 109.47169 * 120.00122 * 2 1 3 34 34 H 1.07992 * 120.44464 * 359.97357 * 5 4 3 35 35 H 1.08000 * 120.75229 * 179.97438 * 6 5 4 36 36 H 1.08004 * 120.35656 * 180.29904 * 7 6 5 37 37 H 1.08996 * 109.46967 * 245.00288 * 9 8 7 38 38 H 1.09004 * 109.47235 * 5.00526 * 9 8 7 39 39 H 1.08994 * 113.54776 * 268.99253 * 13 12 10 40 40 H 1.09003 * 113.54528 * 39.67581 * 13 12 10 41 41 H 1.09006 * 113.54640 * 320.33298 * 15 12 10 42 42 H 1.08997 * 113.54564 * 90.93758 * 15 12 10 43 43 H 1.09000 * 110.76877 * 21.23413 * 16 14 13 44 44 H 1.09004 * 110.76489 * 144.62972 * 16 14 13 45 45 H 1.09004 * 109.86613 * 98.83902 * 17 16 14 46 46 H 1.09006 * 109.86488 * 219.80105 * 17 16 14 47 47 H 0.96998 * 119.99569 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.40144 * 263.50081 * 27 18 17 49 49 H 1.08999 * 110.40059 * 141.07174 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8116 0.0000 6 6 5.2489 2.9791 -0.0011 7 6 6.0539 1.8481 -0.0018 8 6 5.4646 0.5997 -0.0019 9 6 6.3322 -0.6325 -0.0033 10 6 5.9559 -1.5130 1.1605 11 8 5.0702 -1.1735 1.9162 12 7 6.6031 -2.6781 1.3608 13 6 7.6870 -3.4153 0.6870 14 6 7.9858 -4.0652 2.0290 15 6 6.5307 -3.7724 2.3455 16 6 9.0412 -3.3905 2.9163 17 6 10.3191 -4.2024 2.6020 18 7 9.8923 -5.4939 2.0406 19 6 10.7271 -6.4933 1.6167 20 1 10.3173 -7.4401 1.2977 21 6 12.0999 -6.2892 1.5969 22 7 12.6096 -5.1912 2.1139 23 14 13.2242 -7.5729 0.8368 24 1 13.5067 -7.2096 -0.5751 25 1 14.4980 -7.6284 1.5979 26 1 12.5614 -8.9010 0.8832 27 6 8.4157 -5.5362 2.0100 28 7 4.1512 0.4718 -0.0019 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2194 3.6695 0.0004 35 1 5.6847 3.9673 -0.0012 36 1 7.1297 1.9438 0.0022 37 1 6.1854 -1.1791 -0.9348 38 1 7.3785 -0.3403 0.0856 39 1 7.3326 -4.1174 -0.0675 40 1 8.4899 -2.7735 0.3239 41 1 6.3680 -3.4288 3.3671 42 1 5.8512 -4.5741 2.0564 43 1 9.1694 -2.3447 2.6373 44 1 8.7754 -3.4808 3.9696 45 1 10.9292 -3.6660 1.8752 46 1 10.8895 -4.3642 3.5166 47 1 13.5690 -5.0488 2.1003 48 1 8.0322 -6.0556 2.8882 49 1 8.0683 -6.0219 1.0981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688117900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:46 Heat of formation + Delta-G solvation = 33.044976 kcal Electronic energy + Delta-G solvation = -29881.004099 eV Core-core repulsion = 25810.901736 eV Total energy + Delta-G solvation = -4070.102364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.96403 -40.49493 -38.63568 -37.82016 -35.65191 -33.26978 -32.41337 -32.23043 -31.29779 -29.72075 -28.91323 -27.81441 -25.97050 -25.61362 -24.17853 -23.67524 -22.78464 -22.15479 -20.32740 -19.36742 -18.45083 -18.30383 -17.00606 -16.81477 -16.60049 -16.34772 -16.17507 -15.76273 -15.53207 -14.75539 -14.45005 -14.39777 -14.29854 -13.90973 -13.82881 -13.72865 -13.23577 -12.90152 -12.78489 -12.65271 -12.43028 -12.22073 -12.20319 -12.00208 -11.93040 -11.84450 -11.68612 -11.05016 -10.92491 -10.88322 -10.69351 -10.43270 -10.20608 -10.11896 -10.01796 -9.90396 -9.73781 -9.68534 -9.51198 -8.61019 -8.59123 -8.51280 -6.86998 -5.76110 -3.08563 0.93502 1.15592 2.74631 2.86617 2.92582 3.37568 3.43230 3.45160 3.63269 3.91937 4.39352 4.46472 4.58142 4.69162 4.78979 4.82060 4.87209 4.91252 4.96163 5.01779 5.18521 5.21067 5.25588 5.27458 5.45557 5.47747 5.52127 5.55797 5.63611 5.64216 5.68810 5.71856 5.80293 5.81799 5.84555 5.92126 5.99595 6.16440 6.20913 6.26265 6.44203 6.49784 6.64465 6.68543 7.11875 7.52105 7.58434 7.76840 7.78937 7.88240 8.21161 8.29001 9.17777 9.78019 10.44013 11.35849 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002088 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.458656 B =13406.825947 C =14105.636334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.326 3.674 5 C -0.196 4.196 6 C -0.041 4.041 7 C -0.205 4.205 8 C 0.187 3.813 9 C -0.089 4.089 10 C 0.548 3.452 11 O -0.532 6.532 12 N -0.646 5.646 13 C 0.119 3.881 14 C -0.105 4.105 15 C 0.121 3.879 16 C -0.116 4.116 17 C 0.179 3.821 18 N -0.605 5.605 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.153 3.847 28 N -0.512 5.512 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.026 0.974 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.318 13.954 -5.878 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.218 6.218 4 C 0.147 3.853 5 C -0.217 4.217 6 C -0.067 4.067 7 C -0.225 4.225 8 C 0.050 3.950 9 C -0.129 4.129 10 C 0.336 3.664 11 O -0.409 6.409 12 N -0.382 5.382 13 C -0.003 4.003 14 C -0.107 4.107 15 C -0.002 4.002 16 C -0.155 4.155 17 C 0.054 3.946 18 N -0.331 5.331 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.026 3.974 28 N -0.236 5.236 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.289 13.671 -5.526 23.493 hybrid contribution 1.116 -0.108 -0.426 1.200 sum -17.173 13.563 -5.952 22.678 Atomic orbital electron populations 1.21814 0.93171 1.02866 1.03056 1.22596 0.94456 0.80945 1.02883 1.86196 1.16913 1.30859 1.87786 1.19729 0.84026 0.89732 0.91857 1.21041 0.95926 0.95695 1.09052 1.21338 0.92272 0.99304 0.93751 1.21780 1.01488 0.92446 1.06810 1.20185 0.88621 0.93495 0.92712 1.20579 0.99829 0.93214 0.99266 1.19671 0.80687 0.80210 0.85794 1.90716 1.30305 1.72606 1.47223 1.49829 1.38156 1.18344 1.31864 1.22893 0.87882 0.93313 0.96210 1.22169 0.93793 0.98887 0.95809 1.22731 0.96191 0.87367 0.93910 1.22454 0.96343 0.98842 0.97816 1.21229 0.90367 0.84918 0.98094 1.44550 0.98850 1.15918 1.73825 1.19045 0.87400 0.92876 1.36355 0.90382 1.24817 0.96699 0.97719 1.01102 1.69978 1.11200 1.26451 1.49074 0.86131 0.80412 0.80546 0.78882 1.21630 1.21824 1.20637 1.21148 0.86630 0.91018 0.98576 1.67036 1.05820 1.33103 1.17596 0.91838 0.90330 0.91720 0.91823 0.91140 0.84320 0.84059 0.84377 0.87032 0.86958 0.89537 0.90092 0.90634 0.89947 0.92106 0.91868 0.93368 0.94036 0.93748 0.95654 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.07 0.74 6.03 37.15 0.22 0.96 16 3 O -0.31 -3.91 10.12 -18.73 -0.19 -4.10 16 4 C 0.33 4.29 7.49 -17.12 -0.13 4.16 16 5 C -0.20 -2.06 10.04 -39.28 -0.39 -2.45 16 6 C -0.04 -0.37 10.17 -39.31 -0.40 -0.77 16 7 C -0.20 -2.06 9.71 -39.43 -0.38 -2.45 16 8 C 0.19 2.35 5.76 -82.60 -0.48 1.87 16 9 C -0.09 -1.01 5.92 -29.03 -0.17 -1.18 16 10 C 0.55 8.21 8.01 -10.98 -0.09 8.12 16 11 O -0.53 -9.95 16.11 5.56 0.09 -9.86 16 12 N -0.65 -9.17 3.70 -185.75 -0.69 -9.86 16 13 C 0.12 1.63 7.78 -7.34 -0.06 1.57 16 14 C -0.10 -1.65 1.06 -155.23 -0.16 -1.81 16 15 C 0.12 1.70 8.02 -7.49 -0.06 1.64 16 16 C -0.12 -2.04 6.40 -25.61 -0.16 -2.20 16 17 C 0.18 4.07 5.40 -2.83 -0.02 4.06 16 18 N -0.60 -14.45 3.41 -170.53 -0.58 -15.03 16 19 C -0.23 -6.07 10.26 -15.06 -0.15 -6.22 16 20 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 21 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 22 N -0.92 -26.10 10.35 55.49 0.57 -25.52 16 23 Si 0.91 21.39 29.56 -169.99 -5.02 16.36 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.15 2.85 6.70 -3.21 -0.02 2.83 16 28 N -0.51 -7.29 8.08 -9.55 -0.08 -7.37 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.91 8.11 -51.93 -0.42 0.48 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 1.04 7.94 -52.48 -0.42 0.62 16 37 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.11 1.01 7.86 -51.93 -0.41 0.60 16 39 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.21 7.30 -51.93 -0.38 0.84 16 46 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -33.46 403.74 -9.87 -43.32 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.89 Total: -1.06 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.17 Total: 7.03 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.77 Total: -57.78 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.10 Total: -13.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.46 -9.87 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688117900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.369 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds