Wall clock time and date at job start Wed Apr 1 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47373 * 2 1 4 4 C 1.35678 * 117.00055 * 180.02562 * 3 2 1 5 5 C 1.38920 * 119.68148 * 180.02562 * 4 3 2 6 6 C 1.38379 * 119.10746 * 180.02562 * 5 4 3 7 7 C 1.38826 * 118.48891 * 359.95863 * 6 5 4 8 8 C 1.38053 * 119.28804 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.58174 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47101 * 125.00065 * 9 8 7 11 11 O 1.21282 * 119.99552 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99788 * 179.97438 * 10 9 8 13 13 C 1.47385 * 135.85491 * 359.63753 * 12 10 9 14 14 C 1.52076 * 87.40979 * 154.38224 * 13 12 10 15 15 C 1.47389 * 135.85002 * 179.97438 * 12 10 9 16 16 C 1.53507 * 117.21428 * 267.27775 * 14 13 12 17 17 C 1.54630 * 102.70282 * 262.93094 * 16 14 13 18 18 N 1.47146 * 107.37924 * 339.38278 * 17 16 14 19 19 C 1.36940 * 125.58057 * 179.12317 * 18 17 16 20 20 H 1.07995 * 119.99837 * 174.73885 * 19 18 17 21 21 C 1.38808 * 120.00129 * 354.73350 * 19 18 17 22 22 N 1.31628 * 119.99738 * 7.05825 * 21 19 18 23 23 Si 1.86801 * 120.00164 * 187.05371 * 21 19 18 24 24 H 1.48505 * 109.46655 * 94.98969 * 23 21 19 25 25 H 1.48496 * 109.47500 * 214.98653 * 23 21 19 26 26 H 1.48499 * 109.46745 * 334.99214 * 23 21 19 27 27 C 1.47760 * 108.83774 * 359.08842 * 18 17 16 28 28 N 1.31967 * 120.83297 * 0.02562 * 8 7 6 29 29 H 1.09000 * 109.47449 * 60.00326 * 1 2 3 30 30 H 1.09007 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47432 * 300.00264 * 1 2 3 32 32 H 1.09006 * 109.47284 * 240.00030 * 2 1 3 33 33 H 1.09003 * 109.47169 * 120.00122 * 2 1 3 34 34 H 1.07992 * 120.44464 * 359.97357 * 5 4 3 35 35 H 1.08000 * 120.75229 * 179.97438 * 6 5 4 36 36 H 1.08004 * 120.35656 * 180.29904 * 7 6 5 37 37 H 1.08996 * 109.46967 * 245.00288 * 9 8 7 38 38 H 1.09004 * 109.47235 * 5.00526 * 9 8 7 39 39 H 1.08994 * 113.54776 * 268.99253 * 13 12 10 40 40 H 1.09003 * 113.54528 * 39.67581 * 13 12 10 41 41 H 1.09006 * 113.54640 * 320.33298 * 15 12 10 42 42 H 1.08997 * 113.54564 * 90.93758 * 15 12 10 43 43 H 1.09000 * 110.76877 * 21.23413 * 16 14 13 44 44 H 1.09004 * 110.76489 * 144.62972 * 16 14 13 45 45 H 1.09004 * 109.86613 * 98.83902 * 17 16 14 46 46 H 1.09006 * 109.86488 * 219.80105 * 17 16 14 47 47 H 0.96998 * 119.99569 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.40144 * 263.50081 * 27 18 17 49 49 H 1.08999 * 110.40059 * 141.07174 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8116 0.0000 6 6 5.2489 2.9791 -0.0011 7 6 6.0539 1.8481 -0.0018 8 6 5.4646 0.5997 -0.0019 9 6 6.3322 -0.6325 -0.0033 10 6 5.9559 -1.5130 1.1605 11 8 5.0702 -1.1735 1.9162 12 7 6.6031 -2.6781 1.3608 13 6 7.6870 -3.4153 0.6870 14 6 7.9858 -4.0652 2.0290 15 6 6.5307 -3.7724 2.3455 16 6 9.0412 -3.3905 2.9163 17 6 10.3191 -4.2024 2.6020 18 7 9.8923 -5.4939 2.0406 19 6 10.7271 -6.4933 1.6167 20 1 10.3173 -7.4401 1.2977 21 6 12.0999 -6.2892 1.5969 22 7 12.6096 -5.1912 2.1139 23 14 13.2242 -7.5729 0.8368 24 1 13.5067 -7.2096 -0.5751 25 1 14.4980 -7.6284 1.5979 26 1 12.5614 -8.9010 0.8832 27 6 8.4157 -5.5362 2.0100 28 7 4.1512 0.4718 -0.0019 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2194 3.6695 0.0004 35 1 5.6847 3.9673 -0.0012 36 1 7.1297 1.9438 0.0022 37 1 6.1854 -1.1791 -0.9348 38 1 7.3785 -0.3403 0.0856 39 1 7.3326 -4.1174 -0.0675 40 1 8.4899 -2.7735 0.3239 41 1 6.3680 -3.4288 3.3671 42 1 5.8512 -4.5741 2.0564 43 1 9.1694 -2.3447 2.6373 44 1 8.7754 -3.4808 3.9696 45 1 10.9292 -3.6660 1.8752 46 1 10.8895 -4.3642 3.5166 47 1 13.5690 -5.0488 2.1003 48 1 8.0322 -6.0556 2.8882 49 1 8.0683 -6.0219 1.0981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688117900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:44 Heat of formation + Delta-G solvation = 11.438587 kcal Electronic energy + Delta-G solvation = -29881.941023 eV Core-core repulsion = 25810.901736 eV Total energy + Delta-G solvation = -4071.039287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.98503 -41.54507 -39.72718 -38.84468 -37.25202 -34.17499 -34.00323 -33.17554 -32.20406 -31.20375 -30.36738 -28.90168 -27.21527 -27.04305 -25.45373 -24.82831 -23.66455 -22.97499 -22.10564 -20.56775 -19.64301 -19.30315 -18.55612 -17.97658 -17.68841 -17.28585 -16.92453 -16.88806 -16.75971 -16.55536 -15.84299 -15.59999 -15.36359 -15.10979 -14.80673 -14.75672 -14.17639 -14.08799 -13.88668 -13.78109 -13.59907 -13.43332 -13.35549 -13.25010 -12.97084 -12.86494 -12.80819 -12.74875 -12.46961 -12.21411 -11.98906 -11.88503 -11.78845 -11.72472 -11.67299 -11.19313 -10.88472 -10.77934 -10.62621 -10.50742 -9.68627 -9.42215 -8.82567 -7.80682 -5.13962 0.11997 0.38280 1.50984 1.51503 1.60348 1.63658 1.83541 2.07237 2.53990 2.78470 3.08927 3.27213 3.40978 3.56469 3.64481 3.79264 3.85290 4.02425 4.05602 4.10642 4.15469 4.17358 4.24776 4.32139 4.40542 4.45916 4.46584 4.50685 4.60442 4.62565 4.71841 4.74384 4.81889 4.83582 4.88974 4.90289 4.98216 5.02722 5.08019 5.16649 5.20323 5.22486 5.24613 5.53507 5.54157 5.71034 5.83251 6.24940 6.26106 6.74967 6.93357 7.15639 7.16475 7.83265 8.47934 9.30205 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002088 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.458656 B =13406.825947 C =14105.636334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 O -0.320 6.320 4 C 0.294 3.706 5 C -0.199 4.199 6 C -0.036 4.036 7 C -0.202 4.202 8 C 0.158 3.842 9 C -0.082 4.082 10 C 0.544 3.456 11 O -0.575 6.575 12 N -0.644 5.644 13 C 0.127 3.873 14 C -0.099 4.099 15 C 0.125 3.875 16 C -0.101 4.101 17 C 0.189 3.811 18 N -0.625 5.625 19 C -0.235 4.235 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.973 3.027 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.268 1.268 27 C 0.151 3.849 28 N -0.542 5.542 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.018 0.982 46 H 0.000 1.000 47 H 0.245 0.755 48 H 0.030 0.970 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 14.715 -7.257 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 O -0.228 6.228 4 C 0.115 3.885 5 C -0.219 4.219 6 C -0.061 4.061 7 C -0.222 4.222 8 C 0.021 3.979 9 C -0.122 4.122 10 C 0.335 3.665 11 O -0.455 6.455 12 N -0.379 5.379 13 C 0.005 3.995 14 C -0.101 4.101 15 C 0.002 3.998 16 C -0.140 4.140 17 C 0.064 3.936 18 N -0.352 5.352 19 C -0.364 4.364 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.227 1.227 26 H -0.193 1.193 27 C 0.025 3.975 28 N -0.266 5.266 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.184 0.816 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.077 14.409 -6.920 24.888 hybrid contribution 1.345 -0.357 0.052 1.393 sum -17.732 14.052 -6.868 23.644 Atomic orbital electron populations 1.21809 0.90680 1.04090 1.03525 1.22607 0.96346 0.80468 1.01260 1.86183 1.17209 1.31326 1.88110 1.20169 0.84133 0.90756 0.93488 1.21411 0.97154 0.95250 1.08126 1.21830 0.91519 1.00822 0.91963 1.22165 1.03081 0.91779 1.05143 1.20543 0.88382 0.94922 0.94038 1.20646 1.00991 0.92458 0.98073 1.20306 0.79888 0.80234 0.86119 1.90701 1.32247 1.73497 1.49029 1.49831 1.38070 1.18276 1.31769 1.22929 0.87824 0.93399 0.95311 1.21985 0.94214 0.96651 0.97223 1.22727 0.95026 0.88026 0.94026 1.22251 0.94253 0.98766 0.98688 1.20934 0.92183 0.85272 0.95211 1.44838 1.01104 1.15613 1.73617 1.19438 0.88054 0.93753 1.35149 0.89743 1.25601 0.98272 0.99778 1.02222 1.70190 1.10792 1.28301 1.50662 0.85132 0.78092 0.78869 0.77691 1.21374 1.22747 1.19313 1.21304 0.83646 0.93215 0.99286 1.66957 1.06920 1.34184 1.18500 0.90888 0.88725 0.91629 0.92405 0.93772 0.82405 0.80222 0.81575 0.85574 0.84285 0.87620 0.89395 0.91059 0.87978 0.90686 0.91352 0.96369 0.98183 0.94550 0.95266 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.07 1.57 6.03 71.98 0.43 2.01 16 3 O -0.32 -8.25 10.12 -89.95 -0.91 -9.16 16 4 C 0.29 7.73 7.49 84.79 0.63 8.36 16 5 C -0.20 -3.88 10.04 22.47 0.23 -3.66 16 6 C -0.04 -0.55 10.17 22.44 0.23 -0.32 16 7 C -0.20 -3.54 9.71 22.37 0.22 -3.32 16 8 C 0.16 3.76 5.76 42.49 0.24 4.00 16 9 C -0.08 -1.69 5.92 29.10 0.17 -1.52 16 10 C 0.54 15.57 8.01 87.66 0.70 16.27 16 11 O -0.58 -21.47 16.11 -3.03 -0.05 -21.52 16 12 N -0.64 -16.91 3.70 -859.98 -3.18 -20.09 16 13 C 0.13 3.12 7.78 83.76 0.65 3.78 16 14 C -0.10 -2.92 1.06 -52.63 -0.06 -2.98 16 15 C 0.12 3.25 8.02 83.66 0.67 3.92 16 16 C -0.10 -3.47 6.40 31.32 0.20 -3.27 16 17 C 0.19 8.80 5.40 86.81 0.47 9.27 16 18 N -0.63 -29.82 3.41 -693.43 -2.36 -32.19 16 19 C -0.23 -12.45 10.26 84.03 0.86 -11.59 16 20 H 0.08 4.26 7.84 -2.91 -0.02 4.23 16 21 C -0.07 -3.61 5.48 84.86 0.46 -3.14 16 22 N -0.95 -55.46 10.35 21.65 0.22 -55.24 16 23 Si 0.97 44.25 29.56 68.60 2.03 46.28 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 C 0.15 5.38 6.70 86.23 0.58 5.96 16 28 N -0.54 -15.45 8.08 -296.99 -2.40 -17.85 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.34 8.10 -2.38 -0.02 1.32 16 33 H 0.04 1.22 8.11 -2.39 -0.02 1.20 16 34 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.17 1.86 7.94 -2.91 -0.02 1.84 16 37 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.14 2.06 7.86 -2.38 -0.02 2.04 16 39 H 0.11 2.26 8.06 -2.39 -0.02 2.24 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 1.95 8.13 -2.38 -0.02 1.93 16 42 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.02 0.94 7.30 -2.39 -0.02 0.92 16 46 H 0.00 0.00 7.60 -2.38 -0.02 -0.02 16 47 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 Total: -1.00 -75.84 403.74 1.72 -74.11 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.93 Total: 13.33 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 7.44 Total: 22.31 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -7.72 Total: -125.37 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.96 Total: -30.68 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -75.84 1.72 -74.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688117900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.552 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds