Wall clock time and date at job start Wed Apr 1 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46930 * 2 1 4 4 C 1.34775 * 119.99813 * 84.44583 * 3 2 1 5 5 O 1.21358 * 119.99661 * 175.42191 * 4 3 2 6 6 C 1.49346 * 120.00311 * 355.42107 * 4 3 2 7 7 O 1.21379 * 119.99739 * 358.38259 * 6 4 3 8 8 N 1.34778 * 120.00076 * 178.37610 * 6 4 3 9 9 C 1.39731 * 119.99767 * 184.36631 * 8 6 4 10 10 C 1.38932 * 120.07503 * 34.79272 * 9 8 6 11 11 C 1.38098 * 119.92008 * 179.97438 * 10 9 8 12 12 C 1.38289 * 120.07790 * 0.27168 * 11 10 9 13 13 C 1.50698 * 119.92584 * 179.72460 * 12 11 10 14 14 C 1.38295 * 120.15170 * 359.45083 * 12 11 10 15 15 C 1.38096 * 120.07711 * 0.55136 * 14 12 11 16 16 C 1.46499 * 119.99977 * 264.44107 * 3 2 1 17 17 H 1.08998 * 110.64346 * 18.46091 * 16 3 2 18 18 C 1.55156 * 110.72335 * 255.12079 * 16 3 2 19 19 C 1.54909 * 101.58143 * 277.14200 * 18 16 3 20 20 N 1.47421 * 104.83285 * 322.98761 * 19 18 16 21 21 C 1.36936 * 125.65168 * 204.16874 * 20 19 18 22 22 H 1.08002 * 120.00485 * 179.97438 * 21 20 19 23 23 C 1.38816 * 119.99829 * 359.95624 * 21 20 19 24 24 N 1.31628 * 119.99787 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00154 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47332 * 59.99938 * 25 23 21 27 27 H 1.48501 * 109.46979 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46868 * 299.99606 * 25 23 21 29 29 C 1.47023 * 108.70214 * 24.13002 * 20 19 18 30 30 H 1.09001 * 109.46530 * 300.00102 * 1 2 3 31 31 H 1.09001 * 109.47183 * 59.99453 * 1 2 3 32 32 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46698 * 240.00418 * 2 1 3 34 34 H 1.08991 * 109.47107 * 120.00002 * 2 1 3 35 35 H 0.96997 * 120.00256 * 4.37784 * 8 6 4 36 36 H 1.07991 * 120.03650 * 359.95194 * 10 9 8 37 37 H 1.08001 * 119.96062 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47071 * 89.99967 * 13 12 11 39 39 H 1.09000 * 109.47094 * 210.00232 * 13 12 11 40 40 H 1.09001 * 109.46949 * 330.00269 * 13 12 11 41 41 H 1.07999 * 119.96540 * 180.25649 * 14 12 11 42 42 H 1.08002 * 120.04046 * 179.70505 * 15 14 12 43 43 H 1.08999 * 111.00183 * 35.21906 * 18 16 3 44 44 H 1.09004 * 111.00296 * 159.06299 * 18 16 3 45 45 H 1.09006 * 110.36265 * 204.15079 * 19 18 16 46 46 H 1.08994 * 110.46048 * 81.87652 * 19 18 16 47 47 H 0.96999 * 119.99677 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.88226 * 239.52067 * 29 20 19 49 49 H 1.09003 * 109.88256 * 118.36118 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1364 2.0542 1.1617 5 8 2.6185 3.1679 1.1715 6 6 1.6740 1.4295 2.4370 7 8 1.1650 0.3277 2.4233 8 7 1.8221 2.0891 3.6030 9 6 1.4738 1.4687 4.8056 10 6 1.6710 0.1030 4.9672 11 6 1.3261 -0.5068 6.1573 12 6 0.7800 0.2394 7.1856 13 6 0.3992 -0.4305 8.4806 14 6 0.5877 1.6001 7.0302 15 6 0.9302 2.2164 5.8428 16 6 2.3784 2.0309 -1.2628 17 1 1.9346 1.5029 -2.1067 18 6 3.9199 2.1194 -1.4147 19 6 4.2411 3.3917 -0.5915 20 7 3.1166 4.3072 -0.8576 21 6 3.1559 5.6718 -0.7510 22 1 2.2743 6.2562 -0.9693 23 6 4.3289 6.3040 -0.3619 24 7 5.4034 5.5918 -0.0959 25 14 4.3824 8.1655 -0.2157 26 1 3.3840 8.6122 0.7887 27 1 5.7394 8.5895 0.2135 28 1 4.0664 8.7747 -1.5326 29 6 1.9461 3.5123 -1.2573 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.1702 2.9944 3.6073 36 1 2.0930 -0.4811 4.1628 37 1 1.4795 -1.5683 6.2837 38 1 1.2493 -0.4124 9.1627 39 1 -0.4396 0.1000 8.9312 40 1 0.1127 -1.4638 8.2846 41 1 0.1648 2.1807 7.8368 42 1 0.7754 3.2782 5.7204 43 1 4.4057 1.2432 -0.9853 44 1 4.2028 2.2482 -2.4595 45 1 5.1785 3.8346 -0.9280 46 1 4.2941 3.1548 0.4710 47 1 6.2229 6.0336 0.1763 48 1 1.6208 3.8073 -2.2549 49 1 1.1363 3.6596 -0.5425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698587110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:27 Heat of formation + Delta-G solvation = 32.110568 kcal Electronic energy + Delta-G solvation = -31508.675014 eV Core-core repulsion = 27438.532131 eV Total energy + Delta-G solvation = -4070.142883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07170 -39.74129 -38.41222 -36.46439 -35.71993 -34.63005 -32.22185 -31.63957 -31.06085 -30.04752 -28.91502 -27.44446 -26.80902 -24.81799 -24.01814 -23.13401 -22.80143 -21.50681 -20.53653 -19.96575 -19.04183 -17.68560 -17.29373 -16.70782 -16.05865 -15.91803 -15.66866 -15.38223 -14.90002 -14.78154 -14.41851 -14.01346 -13.94070 -13.83901 -13.67510 -13.52237 -13.36693 -13.23082 -12.53771 -12.36942 -12.30031 -12.07772 -11.94478 -11.86831 -11.62262 -11.46097 -11.25746 -11.06658 -10.92032 -10.76760 -10.74431 -10.64379 -10.15779 -10.04268 -9.90500 -9.68361 -9.42331 -9.07744 -8.85330 -8.53530 -8.10841 -7.99100 -6.55423 -5.46203 -2.83013 1.03003 1.30173 1.86959 2.54505 3.47936 3.49982 3.52629 3.53859 3.64309 3.74541 4.51171 4.63285 4.71233 4.74282 4.90888 5.11235 5.16828 5.27368 5.36959 5.38283 5.39097 5.43701 5.58388 5.60648 5.62539 5.66973 5.72149 5.76985 5.86730 5.89987 5.96172 6.10448 6.17017 6.21428 6.29056 6.34989 6.47391 6.49325 6.51577 6.60549 6.67529 6.77932 6.89421 7.07071 7.19792 7.59805 7.74324 7.87191 7.92939 8.03583 8.49863 8.59416 9.41532 10.02873 10.69862 11.57227 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003391 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.347861 B = 8255.605228 C =10057.689449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 N -0.581 5.581 4 C 0.469 3.531 5 O -0.425 6.425 6 C 0.508 3.492 7 O -0.504 6.504 8 N -0.650 5.650 9 C 0.146 3.854 10 C -0.115 4.115 11 C -0.102 4.102 12 C -0.107 4.107 13 C -0.111 4.111 14 C -0.102 4.102 15 C -0.138 4.138 16 C 0.133 3.867 17 H 0.088 0.912 18 C -0.160 4.160 19 C 0.158 3.842 20 N -0.577 5.577 21 C -0.204 4.204 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.288 1.288 29 C 0.139 3.861 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.425 0.575 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.035 0.965 47 H 0.248 0.752 48 H 0.024 0.976 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -15.057 10.148 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.318 5.318 4 C 0.249 3.751 5 O -0.294 6.294 6 C 0.292 3.708 7 O -0.379 6.379 8 N -0.297 5.297 9 C 0.052 3.948 10 C -0.135 4.135 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.167 4.167 14 C -0.120 4.120 15 C -0.159 4.159 16 C 0.030 3.970 17 H 0.106 0.894 18 C -0.200 4.200 19 C 0.034 3.966 20 N -0.302 5.302 21 C -0.333 4.333 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.570 5.570 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.215 1.215 29 C 0.011 3.989 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.264 0.736 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.042 0.958 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.052 -15.010 10.120 20.239 hybrid contribution 0.031 1.350 0.111 1.355 sum -9.021 -13.660 10.230 19.304 Atomic orbital electron populations 1.22104 0.96003 1.01648 1.01871 1.21810 0.94695 0.81958 1.03260 1.47687 1.64716 1.13952 1.05419 1.19726 0.83350 0.87702 0.84287 1.91223 1.36441 1.16754 1.84998 1.20861 0.78753 0.85684 0.85487 1.90672 1.41052 1.19541 1.86673 1.43298 1.62866 1.19652 1.03866 1.17758 0.98410 0.92803 0.85800 1.21131 1.00784 0.93507 0.98100 1.20889 0.98979 0.99716 0.92485 1.19904 1.00517 0.93933 0.96385 1.20747 1.01407 1.00339 0.94253 1.20803 1.00259 0.94061 0.96899 1.20972 1.00763 1.00384 0.93745 1.22232 0.96850 0.94449 0.83436 0.89402 1.23561 0.93594 1.01267 1.01543 1.22075 0.93583 0.85309 0.95665 1.44178 1.06051 1.01559 1.78414 1.18928 0.96215 0.80591 1.37589 0.91168 1.24677 0.96184 0.97485 1.02474 1.69818 1.01341 1.32506 1.53340 0.86231 0.76448 0.85646 0.77629 1.21580 1.21805 1.21494 1.21388 0.92184 0.88442 0.96839 0.92066 0.93266 0.92200 0.91293 0.88594 0.73648 0.84819 0.85819 0.91349 0.91703 0.91683 0.85727 0.85410 0.92421 0.91410 0.88667 0.94782 0.94163 0.95822 0.96245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.64 37.16 0.36 -1.59 16 2 C 0.11 1.37 5.68 -4.04 -0.02 1.35 16 3 N -0.58 -9.50 2.53 -164.57 -0.42 -9.92 16 4 C 0.47 8.59 6.80 -11.63 -0.08 8.51 16 5 O -0.43 -9.56 9.87 5.49 0.05 -9.50 16 6 C 0.51 8.11 7.34 -11.63 -0.09 8.02 16 7 O -0.50 -7.83 9.18 5.47 0.05 -7.78 16 8 N -0.65 -9.49 5.32 -10.29 -0.05 -9.55 16 9 C 0.15 1.96 6.25 -83.74 -0.52 1.43 16 10 C -0.12 -1.48 8.65 -39.38 -0.34 -1.82 16 11 C -0.10 -1.10 9.69 -39.61 -0.38 -1.48 16 12 C -0.11 -1.06 5.88 -104.58 -0.62 -1.67 16 13 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 14 C -0.10 -1.03 9.69 -39.61 -0.38 -1.42 16 15 C -0.14 -1.61 9.97 -39.38 -0.39 -2.00 16 16 C 0.13 2.33 3.64 -66.10 -0.24 2.09 16 17 H 0.09 1.27 8.01 -51.93 -0.42 0.86 16 18 C -0.16 -3.07 6.73 -24.58 -0.17 -3.24 16 19 C 0.16 3.94 4.93 -2.53 -0.01 3.93 16 20 N -0.58 -15.04 2.24 -170.07 -0.38 -15.42 16 21 C -0.20 -5.85 10.27 -15.06 -0.15 -6.01 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 24 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 25 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.14 2.99 5.99 -3.06 -0.02 2.97 16 30 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 34 H 0.10 1.30 5.78 -51.93 -0.30 1.00 16 35 H 0.42 6.20 8.29 -40.82 -0.34 5.86 16 36 H 0.13 1.80 6.49 -52.49 -0.34 1.46 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.10 2.70 5.87 -51.93 -0.30 2.40 16 46 H 0.03 0.94 5.54 -51.93 -0.29 0.65 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.02 0.45 7.09 -51.93 -0.37 0.08 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -32.75 383.65 -9.52 -42.27 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.30 Total: 5.15 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -2.80 Total: 8.19 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.29 Total: -61.86 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.10 Total: -17.28 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.75 -9.52 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698587110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.384 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds