Wall clock time and date at job start Wed Apr 1 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46930 * 2 1 4 4 C 1.34775 * 119.99813 * 84.44583 * 3 2 1 5 5 O 1.21358 * 119.99661 * 175.42191 * 4 3 2 6 6 C 1.49346 * 120.00311 * 355.42107 * 4 3 2 7 7 O 1.21379 * 119.99739 * 358.38259 * 6 4 3 8 8 N 1.34778 * 120.00076 * 178.37610 * 6 4 3 9 9 C 1.39731 * 119.99767 * 184.36631 * 8 6 4 10 10 C 1.38932 * 120.07503 * 34.79272 * 9 8 6 11 11 C 1.38098 * 119.92008 * 179.97438 * 10 9 8 12 12 C 1.38289 * 120.07790 * 0.27168 * 11 10 9 13 13 C 1.50698 * 119.92584 * 179.72460 * 12 11 10 14 14 C 1.38295 * 120.15170 * 359.45083 * 12 11 10 15 15 C 1.38096 * 120.07711 * 0.55136 * 14 12 11 16 16 C 1.46499 * 119.99977 * 264.44107 * 3 2 1 17 17 H 1.08998 * 110.64346 * 18.46091 * 16 3 2 18 18 C 1.55156 * 110.72335 * 255.12079 * 16 3 2 19 19 C 1.54909 * 101.58143 * 277.14200 * 18 16 3 20 20 N 1.47421 * 104.83285 * 322.98761 * 19 18 16 21 21 C 1.36936 * 125.65168 * 204.16874 * 20 19 18 22 22 H 1.08002 * 120.00485 * 179.97438 * 21 20 19 23 23 C 1.38816 * 119.99829 * 359.95624 * 21 20 19 24 24 N 1.31628 * 119.99787 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00154 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47332 * 59.99938 * 25 23 21 27 27 H 1.48501 * 109.46979 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46868 * 299.99606 * 25 23 21 29 29 C 1.47023 * 108.70214 * 24.13002 * 20 19 18 30 30 H 1.09001 * 109.46530 * 300.00102 * 1 2 3 31 31 H 1.09001 * 109.47183 * 59.99453 * 1 2 3 32 32 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46698 * 240.00418 * 2 1 3 34 34 H 1.08991 * 109.47107 * 120.00002 * 2 1 3 35 35 H 0.96997 * 120.00256 * 4.37784 * 8 6 4 36 36 H 1.07991 * 120.03650 * 359.95194 * 10 9 8 37 37 H 1.08001 * 119.96062 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47071 * 89.99967 * 13 12 11 39 39 H 1.09000 * 109.47094 * 210.00232 * 13 12 11 40 40 H 1.09001 * 109.46949 * 330.00269 * 13 12 11 41 41 H 1.07999 * 119.96540 * 180.25649 * 14 12 11 42 42 H 1.08002 * 120.04046 * 179.70505 * 15 14 12 43 43 H 1.08999 * 111.00183 * 35.21906 * 18 16 3 44 44 H 1.09004 * 111.00296 * 159.06299 * 18 16 3 45 45 H 1.09006 * 110.36265 * 204.15079 * 19 18 16 46 46 H 1.08994 * 110.46048 * 81.87652 * 19 18 16 47 47 H 0.96999 * 119.99677 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.88226 * 239.52067 * 29 20 19 49 49 H 1.09003 * 109.88256 * 118.36118 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1364 2.0542 1.1617 5 8 2.6185 3.1679 1.1715 6 6 1.6740 1.4295 2.4370 7 8 1.1650 0.3277 2.4233 8 7 1.8221 2.0891 3.6030 9 6 1.4738 1.4687 4.8056 10 6 1.6710 0.1030 4.9672 11 6 1.3261 -0.5068 6.1573 12 6 0.7800 0.2394 7.1856 13 6 0.3992 -0.4305 8.4806 14 6 0.5877 1.6001 7.0302 15 6 0.9302 2.2164 5.8428 16 6 2.3784 2.0309 -1.2628 17 1 1.9346 1.5029 -2.1067 18 6 3.9199 2.1194 -1.4147 19 6 4.2411 3.3917 -0.5915 20 7 3.1166 4.3072 -0.8576 21 6 3.1559 5.6718 -0.7510 22 1 2.2743 6.2562 -0.9693 23 6 4.3289 6.3040 -0.3619 24 7 5.4034 5.5918 -0.0959 25 14 4.3824 8.1655 -0.2157 26 1 3.3840 8.6122 0.7887 27 1 5.7394 8.5895 0.2135 28 1 4.0664 8.7747 -1.5326 29 6 1.9461 3.5123 -1.2573 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.1702 2.9944 3.6073 36 1 2.0930 -0.4811 4.1628 37 1 1.4795 -1.5683 6.2837 38 1 1.2493 -0.4124 9.1627 39 1 -0.4396 0.1000 8.9312 40 1 0.1127 -1.4638 8.2846 41 1 0.1648 2.1807 7.8368 42 1 0.7754 3.2782 5.7204 43 1 4.4057 1.2432 -0.9853 44 1 4.2028 2.2482 -2.4595 45 1 5.1785 3.8346 -0.9280 46 1 4.2941 3.1548 0.4710 47 1 6.2229 6.0336 0.1763 48 1 1.6208 3.8073 -2.2549 49 1 1.1363 3.6596 -0.5425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698587110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:26 Heat of formation + Delta-G solvation = 12.888917 kcal Electronic energy + Delta-G solvation = -31509.508527 eV Core-core repulsion = 27438.532131 eV Total energy + Delta-G solvation = -4070.976396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.33882 -40.94119 -39.55046 -38.01857 -37.09587 -35.85080 -34.13401 -32.50185 -31.93068 -31.52674 -30.59400 -29.04714 -27.81911 -26.55492 -25.46657 -24.10537 -23.85284 -22.63630 -21.93023 -21.65455 -20.37604 -18.98134 -18.62001 -18.46913 -17.49017 -17.08213 -17.02691 -16.58122 -16.32954 -15.99721 -15.94281 -15.58193 -15.17893 -14.86161 -14.76271 -14.59025 -14.43279 -14.37260 -13.92846 -13.68329 -13.53240 -13.32701 -13.23442 -12.96824 -12.93028 -12.85601 -12.72411 -12.54226 -12.29472 -12.20159 -12.08046 -12.03824 -11.97040 -11.67014 -11.56329 -11.29574 -11.12937 -10.66097 -10.19216 -9.90076 -9.54377 -9.04544 -8.63047 -7.63246 -5.01821 0.00287 0.42570 0.68412 1.30673 1.45215 1.48843 1.54710 2.20311 2.42882 2.56408 2.79962 3.27021 3.43766 3.82384 3.89783 3.92256 4.00054 4.08238 4.10388 4.17092 4.32322 4.39570 4.45617 4.47906 4.50602 4.63769 4.74260 4.76621 4.82525 4.90093 4.90549 5.01784 5.06088 5.08122 5.09222 5.13891 5.16689 5.27178 5.33135 5.37724 5.50874 5.52387 5.66706 5.68522 5.89879 5.92935 6.01286 6.06370 6.30918 6.45089 6.69831 7.12389 7.26019 7.95718 8.60515 9.37613 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003391 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.347861 B = 8255.605228 C =10057.689449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 N -0.575 5.575 4 C 0.467 3.533 5 O -0.478 6.478 6 C 0.510 3.490 7 O -0.501 6.501 8 N -0.647 5.647 9 C 0.117 3.883 10 C -0.130 4.130 11 C -0.106 4.106 12 C -0.103 4.103 13 C -0.110 4.110 14 C -0.103 4.103 15 C -0.145 4.145 16 C 0.146 3.854 17 H 0.137 0.863 18 C -0.145 4.145 19 C 0.163 3.837 20 N -0.594 5.594 21 C -0.218 4.218 22 H 0.069 0.931 23 C -0.070 4.070 24 N -0.946 5.946 25 Si 0.972 3.028 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.278 1.278 29 C 0.135 3.865 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.421 0.579 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.006 0.994 47 H 0.240 0.760 48 H 0.035 0.965 49 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -17.082 10.638 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.310 5.310 4 C 0.248 3.752 5 O -0.350 6.350 6 C 0.293 3.707 7 O -0.376 6.376 8 N -0.293 5.293 9 C 0.024 3.976 10 C -0.150 4.150 11 C -0.125 4.125 12 C -0.104 4.104 13 C -0.166 4.166 14 C -0.122 4.122 15 C -0.165 4.165 16 C 0.043 3.957 17 H 0.154 0.846 18 C -0.184 4.184 19 C 0.038 3.962 20 N -0.319 5.319 21 C -0.348 4.348 22 H 0.086 0.914 23 C -0.262 4.262 24 N -0.597 5.597 25 Si 0.802 3.198 26 H -0.213 1.213 27 H -0.222 1.222 28 H -0.204 1.204 29 C 0.009 3.991 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.259 0.741 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -10.818 -17.095 10.607 22.843 hybrid contribution 0.476 1.895 0.072 1.955 sum -10.342 -15.201 10.679 21.262 Atomic orbital electron populations 1.22031 0.95201 1.02783 1.00881 1.22045 0.95240 0.79865 1.04645 1.47857 1.63585 1.15078 1.04520 1.20208 0.82246 0.87185 0.85565 1.91212 1.38979 1.18979 1.85858 1.20418 0.79249 0.85798 0.85198 1.90664 1.41162 1.19187 1.86615 1.43265 1.62503 1.19367 1.04175 1.18002 1.00426 0.93419 0.85750 1.21162 1.01643 0.93289 0.98875 1.21173 0.98532 1.00909 0.91869 1.20324 0.98850 0.93925 0.97262 1.20816 1.02299 1.00783 0.92707 1.21167 0.99560 0.94606 0.96840 1.21175 1.00610 1.00815 0.93938 1.22210 0.95606 0.92579 0.85353 0.84586 1.23378 0.95105 0.98771 1.01193 1.21767 0.91882 0.87485 0.95026 1.44372 1.07911 1.01236 1.78343 1.19254 0.96113 0.82398 1.36995 0.91351 1.25456 0.96046 1.01683 1.03007 1.70111 1.01469 1.33688 1.54414 0.85233 0.76013 0.80747 0.77818 1.21256 1.22151 1.20383 1.21532 0.90405 0.90782 0.96411 0.94572 0.92684 0.89977 0.88055 0.89083 0.74128 0.86028 0.83716 0.90229 0.90425 0.90639 0.83113 0.84770 0.90607 0.90115 0.92776 0.97628 0.95070 0.94743 0.97834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.64 71.98 0.69 -2.64 16 2 C 0.10 2.41 5.68 86.38 0.49 2.90 16 3 N -0.57 -18.10 2.53 -792.94 -2.00 -20.10 16 4 C 0.47 17.49 6.80 87.24 0.59 18.08 16 5 O -0.48 -22.58 9.87 -3.27 -0.03 -22.61 16 6 C 0.51 16.76 7.34 87.24 0.64 17.40 16 7 O -0.50 -15.57 9.18 -3.34 -0.03 -15.60 16 8 N -0.65 -19.89 5.32 -304.83 -1.62 -21.52 16 9 C 0.12 3.20 6.25 38.21 0.24 3.44 16 10 C -0.13 -3.33 8.65 22.40 0.19 -3.14 16 11 C -0.11 -2.14 9.69 22.25 0.22 -1.93 16 12 C -0.10 -1.81 5.88 -19.84 -0.12 -1.93 16 13 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 14 C -0.10 -1.91 9.69 22.25 0.22 -1.70 16 15 C -0.15 -3.34 9.97 22.40 0.22 -3.12 16 16 C 0.15 4.80 3.64 46.18 0.17 4.97 16 17 H 0.14 3.29 8.01 -2.39 -0.02 3.27 16 18 C -0.15 -5.40 6.73 31.99 0.22 -5.19 16 19 C 0.16 8.42 4.93 86.86 0.43 8.85 16 20 N -0.59 -31.83 2.24 -691.98 -1.55 -33.38 16 21 C -0.22 -12.88 10.27 84.03 0.86 -12.01 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 23 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 24 N -0.95 -59.20 10.09 21.65 0.22 -58.99 16 25 Si 0.97 48.21 29.55 68.60 2.03 50.24 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 28 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 29 C 0.13 5.79 5.99 86.73 0.52 6.31 16 30 H 0.04 0.98 6.47 -2.39 -0.02 0.97 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.78 8.01 -2.39 -0.02 1.76 16 34 H 0.09 2.29 5.78 -2.39 -0.01 2.28 16 35 H 0.42 13.33 8.29 -92.71 -0.77 12.56 16 36 H 0.12 3.34 6.49 -2.91 -0.02 3.32 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 40 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 45 H 0.05 3.23 5.87 -2.38 -0.01 3.22 16 46 H 0.01 0.35 5.54 -2.42 -0.01 0.34 16 47 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.00 0.17 7.09 -2.39 -0.02 0.16 16 Total: -1.00 -75.52 383.65 3.97 -71.55 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.20 Total: 24.29 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 6.76 Total: 26.13 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -4.96 Total: -133.99 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.06 Total: -38.22 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -75.52 3.97 -71.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698587110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.438 kcal (2) G-P(sol) polarization free energy of solvation -75.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds