Wall clock time and date at job start Wed Apr 1 2020 04:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.52999 * 109.47070 * 90.00054 * 4 3 2 6 6 N 1.46896 * 109.47356 * 180.02562 * 5 4 3 7 7 C 1.46903 * 111.00045 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46971 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00405 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00009 * 179.97438 * 8 7 6 11 11 C 1.37094 * 119.99975 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00191 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99845 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00143 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00215 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47232 * 89.99690 * 15 13 11 17 17 H 1.48502 * 109.47363 * 210.00021 * 15 13 11 18 18 H 1.48501 * 109.47009 * 330.00066 * 15 13 11 19 19 C 1.34777 * 119.99873 * 90.00333 * 3 2 1 20 20 O 1.21283 * 120.00222 * 179.97438 * 19 3 2 21 21 C 1.50699 * 119.99772 * 359.97438 * 19 3 2 22 22 H 1.08999 * 112.83535 * 311.11181 * 21 19 3 23 23 C 1.53524 * 113.58664 * 180.02562 * 21 19 3 24 24 C 1.51605 * 87.24697 * 245.41033 * 23 21 19 25 25 C 1.38375 * 147.52910 * 180.02562 * 24 23 21 26 26 C 1.38091 * 120.33085 * 179.97438 * 25 24 23 27 27 C 1.38250 * 119.95314 * 0.02562 * 26 25 24 28 28 C 1.38094 * 119.95443 * 359.97438 * 27 26 25 29 29 C 1.38381 * 120.33101 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 32 32 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 33 33 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 34 34 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 35 35 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 36 36 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 37 37 H 1.09002 * 109.47116 * 300.00653 * 5 4 3 38 38 H 1.09001 * 109.47317 * 59.99875 * 5 4 3 39 39 H 1.00897 * 110.99953 * 303.95307 * 6 5 4 40 40 H 1.09003 * 109.46885 * 299.99764 * 7 6 5 41 41 H 1.08998 * 109.47252 * 59.99544 * 7 6 5 42 42 H 0.96999 * 119.99768 * 359.97438 * 10 8 7 43 43 H 0.96999 * 120.00372 * 179.97438 * 14 13 11 44 44 H 1.08999 * 113.58769 * 359.97438 * 23 21 19 45 45 H 1.09000 * 113.58866 * 130.73705 * 23 21 19 46 46 H 1.08001 * 119.83379 * 359.97438 * 25 24 23 47 47 H 1.07997 * 120.02675 * 180.02562 * 26 25 24 48 48 H 1.07994 * 120.02714 * 180.02562 * 27 26 25 49 49 H 1.08003 * 119.83822 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 0.9953 2.7904 -1.7173 6 7 1.2458 3.4804 -2.9897 7 6 0.0427 4.1854 -3.4520 8 6 0.3373 4.8791 -4.7570 9 8 1.4409 4.7949 -5.2530 10 7 -0.6257 5.5931 -5.3730 11 6 -0.3575 6.2245 -6.5600 12 1 0.6251 6.1495 -7.0016 13 6 -1.3502 6.9611 -7.1948 14 7 -1.0930 7.5668 -8.3323 15 14 -3.0501 7.0903 -6.4313 16 1 -3.0992 8.2687 -5.5290 17 1 -4.0643 7.2461 -7.5048 18 1 -3.3381 5.8587 -5.6532 19 6 2.2430 2.0166 1.1672 20 8 2.6477 3.1599 1.1673 21 6 1.9913 1.3063 2.4723 22 1 1.0164 0.8202 2.5082 23 6 2.2946 2.1656 3.7078 24 6 3.4093 1.1878 4.0238 25 6 4.4406 0.8279 4.8732 26 6 5.1964 -0.2985 4.6145 27 6 4.9237 -1.0720 3.5015 28 6 3.8956 -0.7174 2.6505 29 6 3.1345 0.4097 2.9056 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.0696 2.7967 -1.1359 36 1 2.5598 1.3420 -2.0258 37 1 0.1940 2.0635 -1.8501 38 1 0.7037 3.5183 -0.9602 39 1 2.0273 4.1135 -2.9100 40 1 -0.7656 3.4685 -3.5963 41 1 -0.2548 4.9233 -2.7069 42 1 -1.5084 5.6601 -4.9766 43 1 -1.7860 8.0806 -8.7757 44 1 2.6494 3.1674 3.4659 45 1 1.4922 2.1674 4.4455 46 1 4.6556 1.4310 5.7430 47 1 5.9999 -0.5750 5.2810 48 1 5.5137 -1.9534 3.2982 49 1 3.6840 -1.3233 1.7818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699201637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:21 Heat of formation + Delta-G solvation = 3.205398 kcal Electronic energy + Delta-G solvation = -29181.173422 eV Core-core repulsion = 25109.777117 eV Total energy + Delta-G solvation = -4071.396305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47152 -39.53846 -38.45189 -36.83294 -35.60551 -35.26981 -33.87418 -31.68875 -31.44310 -31.13675 -29.52764 -28.02975 -26.57642 -25.32687 -23.76279 -23.67865 -22.51145 -21.94470 -20.89649 -19.42420 -19.16169 -18.33420 -17.85942 -17.15158 -16.54102 -16.24513 -15.74248 -15.59650 -15.41940 -14.95245 -14.77589 -14.66282 -14.26079 -13.96947 -13.73592 -13.65408 -13.48386 -13.41278 -13.13217 -13.00981 -12.96298 -12.52604 -12.44937 -12.38064 -12.20483 -12.08954 -11.88636 -11.66092 -11.56495 -11.39907 -11.16860 -10.95833 -10.87601 -10.58422 -10.23322 -9.96202 -9.55828 -9.25443 -9.06004 -8.96460 -8.56684 -8.19198 -8.13767 -6.29565 -3.80905 0.84362 0.97197 2.23456 2.60448 3.03732 3.07977 3.15960 3.33121 3.69768 3.75911 3.92684 3.99650 4.10882 4.13659 4.25565 4.50961 4.63137 4.67205 4.71922 4.80303 4.88192 4.96580 5.02536 5.11552 5.15797 5.18544 5.24285 5.27417 5.31800 5.37923 5.43878 5.48929 5.56582 5.62195 5.68061 5.73180 5.79544 5.83896 5.92640 5.95522 5.97928 6.07686 6.23345 6.27410 6.54252 7.05106 7.06974 7.55911 7.59924 7.85717 8.16136 8.61431 8.96546 9.44016 9.84382 10.83578 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025096 B = 0.001727 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.452011 B =16208.436250 C =16232.065221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 N -0.606 5.606 4 C 0.117 3.883 5 C 0.045 3.955 6 N -0.667 5.667 7 C 0.050 3.950 8 C 0.451 3.549 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.531 3.469 20 O -0.528 6.528 21 C -0.067 4.067 22 H 0.120 0.880 23 C -0.059 4.059 24 C -0.116 4.116 25 C -0.097 4.097 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.087 4.087 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.352 0.648 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -20.262 29.057 35.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 N -0.339 5.339 4 C -0.006 4.006 5 C -0.085 4.085 6 N -0.300 5.300 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.445 6.445 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.319 3.681 20 O -0.404 6.404 21 C -0.088 4.088 22 H 0.138 0.862 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.105 4.105 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.925 -20.129 28.129 34.938 hybrid contribution -1.599 0.754 0.974 2.018 sum 3.326 -19.375 29.103 35.120 Atomic orbital electron populations 1.22316 0.95550 1.02625 1.02945 1.21698 0.94808 0.82104 1.03609 1.47902 1.65761 1.14321 1.05868 1.21451 0.97804 0.97618 0.83733 1.22344 0.97940 0.97841 0.90402 1.60027 1.06857 1.35213 1.27869 1.21685 0.93639 0.97051 0.95917 1.19694 0.85987 0.83576 0.87131 1.90564 1.22953 1.64022 1.67009 1.42202 1.11654 1.46775 1.22407 1.19438 1.01361 1.26113 0.96444 0.86264 1.25037 0.98311 0.96849 0.95972 1.69621 1.34310 1.32409 1.15812 0.86668 0.84419 0.78701 0.79578 1.19658 1.20166 1.19503 1.20057 0.77100 0.86286 0.84703 1.90722 1.45025 1.17676 1.86978 1.21571 0.98434 0.95231 0.93570 0.86198 1.21850 0.94905 0.98669 0.94178 1.22212 0.96297 0.97472 0.95620 1.20329 0.94684 0.97126 0.99339 1.21052 0.99385 0.94802 0.97680 1.21003 0.97582 1.00206 0.95021 1.20345 0.94949 0.95597 0.99571 1.21685 0.97524 0.95814 0.97616 0.91230 0.92474 0.91491 0.89698 0.90215 0.89697 0.89232 0.90897 0.95120 0.82810 0.89542 0.93712 0.79703 0.91630 0.87188 0.88415 0.86182 0.85484 0.85424 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 10.17 37.16 0.38 -0.63 16 2 C 0.10 0.64 5.87 -4.04 -0.02 0.61 16 3 N -0.61 -5.76 2.47 -173.69 -0.43 -6.19 16 4 C 0.12 1.31 5.71 -4.04 -0.02 1.28 16 5 C 0.05 0.56 6.01 -3.83 -0.02 0.54 16 6 N -0.67 -10.66 6.13 -115.06 -0.70 -11.37 16 7 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 8 C 0.45 10.46 7.82 -10.98 -0.09 10.37 16 9 O -0.56 -15.42 15.78 5.55 0.09 -15.33 16 10 N -0.59 -14.33 5.09 -10.97 -0.06 -14.39 16 11 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 12 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 15 Si 0.88 19.57 27.74 -169.99 -4.71 14.86 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 19 C 0.53 5.91 7.21 -10.99 -0.08 5.83 16 20 O -0.53 -7.94 15.28 5.55 0.08 -7.85 16 21 C -0.07 -0.55 2.99 -92.23 -0.28 -0.83 16 22 H 0.12 0.71 6.88 -51.93 -0.36 0.35 16 23 C -0.06 -0.48 7.77 -27.18 -0.21 -0.69 16 24 C -0.12 -1.02 7.49 -103.88 -0.78 -1.80 16 25 C -0.10 -0.75 10.03 -39.58 -0.40 -1.15 16 26 C -0.11 -0.75 10.04 -39.63 -0.40 -1.15 16 27 C -0.12 -0.81 10.04 -39.63 -0.40 -1.21 16 28 C -0.09 -0.65 9.68 -39.58 -0.38 -1.03 16 29 C -0.13 -1.07 6.22 -103.88 -0.65 -1.72 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 7.23 -51.93 -0.38 -0.05 16 32 H 0.07 0.47 6.28 -51.92 -0.33 0.14 16 33 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 34 H 0.08 0.42 5.12 -51.93 -0.27 0.15 16 35 H 0.08 1.11 7.42 -51.93 -0.39 0.72 16 36 H 0.09 0.92 7.89 -51.93 -0.41 0.52 16 37 H 0.07 0.82 6.28 -51.93 -0.33 0.50 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.11 1.07 7.04 -51.93 -0.37 0.70 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 48 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 49 H 0.12 0.67 7.39 -52.48 -0.39 0.29 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -35.71 400.25 -9.66 -45.37 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.11 Total: 12.69 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -3.62 Total: 1.40 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.42 Total: -57.16 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.71 -9.66 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699201637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.576 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds