Wall clock time and date at job start Wed Apr 1 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.52999 * 109.47070 * 90.00054 * 4 3 2 6 6 N 1.46896 * 109.47356 * 180.02562 * 5 4 3 7 7 C 1.46903 * 111.00045 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46971 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00405 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00009 * 179.97438 * 8 7 6 11 11 C 1.37094 * 119.99975 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00191 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99845 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00143 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00215 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47232 * 89.99690 * 15 13 11 17 17 H 1.48502 * 109.47363 * 210.00021 * 15 13 11 18 18 H 1.48501 * 109.47009 * 330.00066 * 15 13 11 19 19 C 1.34777 * 119.99873 * 90.00333 * 3 2 1 20 20 O 1.21283 * 120.00222 * 179.97438 * 19 3 2 21 21 C 1.50699 * 119.99772 * 359.97438 * 19 3 2 22 22 H 1.08999 * 112.83535 * 311.11181 * 21 19 3 23 23 C 1.53524 * 113.58664 * 180.02562 * 21 19 3 24 24 C 1.51605 * 87.24697 * 245.41033 * 23 21 19 25 25 C 1.38375 * 147.52910 * 180.02562 * 24 23 21 26 26 C 1.38091 * 120.33085 * 179.97438 * 25 24 23 27 27 C 1.38250 * 119.95314 * 0.02562 * 26 25 24 28 28 C 1.38094 * 119.95443 * 359.97438 * 27 26 25 29 29 C 1.38381 * 120.33101 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 32 32 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 33 33 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 34 34 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 35 35 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 36 36 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 37 37 H 1.09002 * 109.47116 * 300.00653 * 5 4 3 38 38 H 1.09001 * 109.47317 * 59.99875 * 5 4 3 39 39 H 1.00897 * 110.99953 * 303.95307 * 6 5 4 40 40 H 1.09003 * 109.46885 * 299.99764 * 7 6 5 41 41 H 1.08998 * 109.47252 * 59.99544 * 7 6 5 42 42 H 0.96999 * 119.99768 * 359.97438 * 10 8 7 43 43 H 0.96999 * 120.00372 * 179.97438 * 14 13 11 44 44 H 1.08999 * 113.58769 * 359.97438 * 23 21 19 45 45 H 1.09000 * 113.58866 * 130.73705 * 23 21 19 46 46 H 1.08001 * 119.83379 * 359.97438 * 25 24 23 47 47 H 1.07997 * 120.02675 * 180.02562 * 26 25 24 48 48 H 1.07994 * 120.02714 * 180.02562 * 27 26 25 49 49 H 1.08003 * 119.83822 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 0.9953 2.7904 -1.7173 6 7 1.2458 3.4804 -2.9897 7 6 0.0427 4.1854 -3.4520 8 6 0.3373 4.8791 -4.7570 9 8 1.4409 4.7949 -5.2530 10 7 -0.6257 5.5931 -5.3730 11 6 -0.3575 6.2245 -6.5600 12 1 0.6251 6.1495 -7.0016 13 6 -1.3502 6.9611 -7.1948 14 7 -1.0930 7.5668 -8.3323 15 14 -3.0501 7.0903 -6.4313 16 1 -3.0992 8.2687 -5.5290 17 1 -4.0643 7.2461 -7.5048 18 1 -3.3381 5.8587 -5.6532 19 6 2.2430 2.0166 1.1672 20 8 2.6477 3.1599 1.1673 21 6 1.9913 1.3063 2.4723 22 1 1.0164 0.8202 2.5082 23 6 2.2946 2.1656 3.7078 24 6 3.4093 1.1878 4.0238 25 6 4.4406 0.8279 4.8732 26 6 5.1964 -0.2985 4.6145 27 6 4.9237 -1.0720 3.5015 28 6 3.8956 -0.7174 2.6505 29 6 3.1345 0.4097 2.9056 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.0696 2.7967 -1.1359 36 1 2.5598 1.3420 -2.0258 37 1 0.1940 2.0635 -1.8501 38 1 0.7037 3.5183 -0.9602 39 1 2.0273 4.1135 -2.9100 40 1 -0.7656 3.4685 -3.5963 41 1 -0.2548 4.9233 -2.7069 42 1 -1.5084 5.6601 -4.9766 43 1 -1.7860 8.0806 -8.7757 44 1 2.6494 3.1674 3.4659 45 1 1.4922 2.1674 4.4455 46 1 4.6556 1.4310 5.7430 47 1 5.9999 -0.5750 5.2810 48 1 5.5137 -1.9534 3.2982 49 1 3.6840 -1.3233 1.7818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699201637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:20 Heat of formation + Delta-G solvation = -21.973507 kcal Electronic energy + Delta-G solvation = -29182.265261 eV Core-core repulsion = 25109.777117 eV Total energy + Delta-G solvation = -4072.488144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13221 -40.40824 -40.15653 -37.77332 -36.53510 -36.17415 -35.82413 -33.77024 -32.21530 -31.69250 -30.48773 -28.76352 -27.85624 -26.38524 -25.19552 -24.29471 -23.32524 -22.72962 -21.52014 -21.29757 -20.33707 -19.85663 -18.58615 -17.92870 -17.69190 -17.31095 -17.14224 -16.69698 -16.35080 -16.12922 -15.70140 -15.64619 -15.31591 -15.13440 -14.87179 -14.81368 -14.59667 -14.24623 -14.09540 -13.92250 -13.88197 -13.78942 -13.59668 -13.30914 -13.03532 -13.00996 -12.94067 -12.74141 -12.57309 -12.42702 -12.26067 -11.98611 -11.94888 -11.73395 -11.53156 -11.46945 -11.03297 -10.50047 -10.26733 -9.83155 -9.79729 -9.53935 -9.44955 -8.42420 -6.03709 0.29246 0.43118 1.29555 1.34897 1.42452 1.44101 1.83364 1.92568 2.22221 2.73149 2.79561 3.10031 3.13557 3.34094 3.38827 3.41905 3.57962 3.96241 4.03675 4.09094 4.13732 4.16522 4.20500 4.23348 4.36652 4.39547 4.47165 4.51822 4.57465 4.62501 4.69431 4.74578 4.79709 4.81671 4.92127 4.95348 5.00616 5.03051 5.13383 5.41458 5.45003 5.45777 5.52193 5.56479 5.71370 5.85083 5.97717 6.03625 6.23850 6.30521 6.57715 6.85950 7.04543 7.37245 7.93474 8.75151 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025096 B = 0.001727 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.452011 B =16208.436250 C =16232.065221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.121 3.879 5 C 0.056 3.944 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.589 5.589 11 C -0.331 4.331 12 H 0.055 0.945 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.230 1.230 19 C 0.526 3.474 20 O -0.578 6.578 21 C -0.058 4.058 22 H 0.146 0.854 23 C -0.060 4.060 24 C -0.140 4.140 25 C -0.112 4.112 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.096 4.096 29 C -0.139 4.139 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.023 0.977 39 H 0.342 0.658 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.390 0.610 43 H 0.280 0.720 44 H 0.086 0.914 45 H 0.120 0.880 46 H 0.131 0.869 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 -22.845 31.722 39.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 N -0.331 5.331 4 C -0.003 4.003 5 C -0.073 4.073 6 N -0.312 5.312 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.231 5.231 11 C -0.460 4.460 12 H 0.073 0.927 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.154 1.154 19 C 0.314 3.686 20 O -0.457 6.457 21 C -0.079 4.079 22 H 0.164 0.836 23 C -0.097 4.097 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.143 4.143 28 C -0.113 4.113 29 C -0.139 4.139 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.041 0.959 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.138 0.862 46 H 0.149 0.851 47 H 0.167 0.833 48 H 0.169 0.831 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.331 -22.771 30.818 38.389 hybrid contribution -0.613 1.503 0.114 1.627 sum 1.718 -21.268 30.932 37.578 Atomic orbital electron populations 1.22291 0.94654 1.03757 1.02417 1.21962 0.95485 0.80183 1.04926 1.47986 1.65032 1.15349 1.04751 1.21294 0.96608 0.97494 0.84887 1.22333 0.98973 0.97626 0.88417 1.60058 1.06232 1.34961 1.29980 1.21619 0.94792 0.97968 0.92503 1.20919 0.84817 0.82196 0.88477 1.90543 1.25131 1.65348 1.68774 1.42014 1.12951 1.46879 1.21259 1.19019 0.99575 1.28637 0.98791 0.92675 1.26128 1.03839 0.95251 0.96105 1.69803 1.36572 1.33170 1.17808 0.85358 0.76416 0.80659 0.79045 1.18281 1.19828 1.15371 1.20622 0.76181 0.85833 0.85930 1.90699 1.47325 1.19950 1.87738 1.21547 0.99667 0.95006 0.91661 0.83609 1.21857 0.95630 0.97374 0.94874 1.22433 0.97076 0.98007 0.96479 1.20617 0.94702 0.97839 0.99805 1.21400 0.99587 0.94289 0.98081 1.21372 0.97433 1.00845 0.94661 1.20648 0.94878 0.95494 1.00325 1.21784 0.98008 0.96417 0.97703 0.89281 0.92344 0.92616 0.88569 0.88775 0.92232 0.88160 0.88861 0.95911 0.83949 0.86354 0.91075 0.77441 0.91091 0.89545 0.86154 0.85130 0.83290 0.83127 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.17 71.98 0.73 -0.68 16 2 C 0.10 0.95 5.87 86.38 0.51 1.45 16 3 N -0.60 -10.60 2.47 -821.81 -2.03 -12.63 16 4 C 0.12 2.63 5.71 86.38 0.49 3.12 16 5 C 0.06 1.31 6.01 86.30 0.52 1.83 16 6 N -0.68 -21.07 6.13 -517.94 -3.17 -24.24 16 7 C 0.06 2.03 6.17 85.56 0.53 2.56 16 8 C 0.45 20.80 7.82 87.66 0.69 21.48 16 9 O -0.61 -34.90 15.78 -3.05 -0.05 -34.94 16 10 N -0.59 -28.36 5.09 -306.99 -1.56 -29.92 16 11 C -0.33 -19.72 10.16 84.04 0.85 -18.87 16 12 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 13 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 14 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 15 Si 0.97 39.11 27.74 68.60 1.90 41.01 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 19 C 0.53 11.46 7.21 87.66 0.63 12.09 16 20 O -0.58 -17.98 15.28 -3.04 -0.05 -18.03 16 21 C -0.06 -0.88 2.99 -11.83 -0.04 -0.92 16 22 H 0.15 1.35 6.88 -2.39 -0.02 1.34 16 23 C -0.06 -0.96 7.77 30.30 0.24 -0.72 16 24 C -0.14 -2.38 7.49 -19.38 -0.15 -2.53 16 25 C -0.11 -1.64 10.03 22.27 0.22 -1.42 16 26 C -0.12 -1.37 10.04 22.24 0.22 -1.15 16 27 C -0.13 -1.42 10.04 22.24 0.22 -1.20 16 28 C -0.10 -1.24 9.68 22.27 0.22 -1.02 16 29 C -0.14 -2.18 6.22 -19.38 -0.12 -2.30 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.47 7.23 -2.39 -0.02 0.46 16 32 H 0.05 0.60 6.28 -2.38 -0.01 0.58 16 33 H 0.10 0.77 7.89 -2.39 -0.02 0.75 16 34 H 0.09 0.70 5.12 -2.39 -0.01 0.68 16 35 H 0.06 1.61 7.42 -2.39 -0.02 1.60 16 36 H 0.10 1.95 7.89 -2.39 -0.02 1.93 16 37 H 0.09 1.81 6.28 -2.39 -0.01 1.80 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.34 11.80 8.43 -89.70 -0.76 11.04 16 40 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.39 15.48 5.76 -92.71 -0.53 14.95 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.09 1.79 7.04 -2.39 -0.02 1.77 16 45 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 48 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 49 H 0.14 1.17 7.39 -2.91 -0.02 1.15 16 Total: -1.00 -84.52 400.25 1.22 -83.30 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.36 Total: 40.54 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.24 Total: 11.38 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -6.47 Total: -123.25 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.09 Total: -52.97 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.01 kcal Total: -84.52 1.22 -83.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699201637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.327 kcal (2) G-P(sol) polarization free energy of solvation -84.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds