Wall clock time and date at job start Wed Apr 1 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46791 * 2 1 4 4 C 1.46898 * 110.99522 * 76.03433 * 3 2 1 5 5 C 1.53001 * 109.46745 * 199.54136 * 4 3 2 6 6 N 1.46499 * 109.47150 * 174.88262 * 5 4 3 7 7 C 1.34774 * 120.00236 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99920 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00189 * 180.02562 * 7 6 5 10 10 H 1.08992 * 112.88899 * 51.66680 * 9 7 6 11 11 C 1.52271 * 113.20690 * 183.03697 * 9 7 6 12 12 C 1.50555 * 87.23439 * 114.71044 * 11 9 7 13 13 C 1.38813 * 147.30457 * 179.53785 * 12 11 9 14 14 C 1.38069 * 120.09120 * 180.02562 * 13 12 11 15 15 C 1.38232 * 119.98149 * 0.02562 * 14 13 12 16 16 C 1.38069 * 119.98164 * 359.97438 * 15 14 13 17 17 C 1.37715 * 92.77056 * 359.79614 * 12 11 9 18 18 C 1.46899 * 110.99590 * 199.97847 * 3 2 1 19 19 C 1.50707 * 109.46784 * 66.05520 * 18 3 2 20 20 O 1.21290 * 120.00336 * 359.97438 * 19 18 3 21 21 N 1.34779 * 119.99577 * 179.97438 * 19 18 3 22 22 C 1.37101 * 119.99491 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00287 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99705 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00115 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99902 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46935 * 59.99939 * 26 24 22 28 28 H 1.48498 * 109.46916 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46962 * 300.00009 * 26 24 22 30 30 H 1.08998 * 109.47517 * 54.87216 * 1 2 3 31 31 H 1.09004 * 109.47180 * 174.86838 * 1 2 3 32 32 H 1.08996 * 109.47326 * 294.86542 * 1 2 3 33 33 H 1.09003 * 109.46826 * 240.00637 * 2 1 3 34 34 H 1.08994 * 109.47453 * 120.00887 * 2 1 3 35 35 H 1.08999 * 109.47573 * 79.54150 * 4 3 2 36 36 H 1.09000 * 109.47424 * 319.53938 * 4 3 2 37 37 H 1.09004 * 109.47158 * 54.88638 * 5 4 3 38 38 H 1.08997 * 109.47587 * 294.88348 * 5 4 3 39 39 H 0.97005 * 120.00197 * 0.02562 * 6 5 4 40 40 H 1.08996 * 113.97259 * 0.06327 * 11 9 7 41 41 H 1.08997 * 113.20236 * 229.24467 * 11 9 7 42 42 H 1.08001 * 119.95403 * 0.02562 * 13 12 11 43 43 H 1.08002 * 120.00739 * 180.02562 * 14 13 12 44 44 H 1.08004 * 120.01264 * 180.02562 * 15 14 13 45 45 H 1.07992 * 119.95412 * 179.97438 * 16 15 14 46 46 H 1.09007 * 109.47177 * 186.04436 * 18 3 2 47 47 H 1.08997 * 109.47504 * 306.05076 * 18 3 2 48 48 H 0.96993 * 120.00453 * 359.97438 * 21 19 18 49 49 H 0.96999 * 120.00297 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8830 1.9916 1.3309 5 6 1.9279 3.5156 1.2038 6 7 1.6698 4.1226 2.5119 7 6 1.6596 5.4640 2.6422 8 8 1.8636 6.1686 1.6764 9 6 1.3947 6.0884 3.9880 10 1 2.0343 5.6879 4.7744 11 6 1.3462 7.6097 3.9445 12 6 -0.1068 7.5015 4.3236 13 6 -1.2916 8.1651 4.6114 14 6 -2.4282 7.4474 4.9265 15 6 -2.3867 6.0660 4.9562 16 6 -1.2089 5.4048 4.6702 17 6 -0.0643 6.1254 4.3582 18 6 3.4103 1.4517 -0.4686 19 6 3.4711 1.0500 -1.9199 20 8 2.4559 0.7384 -2.5060 21 7 4.6536 1.0371 -2.5664 22 6 4.7090 0.6712 -3.8866 23 1 3.8051 0.3929 -4.4082 24 6 5.9279 0.6584 -4.5533 25 7 7.0276 0.9974 -3.9188 26 14 6.0034 0.1605 -6.3522 27 1 5.1639 1.0840 -7.1570 28 1 7.4091 0.2285 -6.8261 29 1 5.4971 -1.2273 -6.5033 30 1 -0.3634 0.5913 -0.8405 31 1 -0.3634 -1.0236 -0.0919 32 1 -0.3634 0.4321 0.9324 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.7005 1.6560 1.9689 36 1 0.9320 1.6916 1.7711 37 1 1.1677 3.8436 0.4947 38 1 2.9119 3.8218 0.8490 39 1 1.5062 3.5591 3.2843 40 1 1.5079 8.0297 2.9518 41 1 1.9627 8.0810 4.7098 42 1 -1.3244 9.2444 4.5887 43 1 -3.3494 7.9651 5.1497 44 1 -3.2756 5.5040 5.2023 45 1 -1.1769 4.3256 4.6940 46 1 3.7826 2.4702 -0.3577 47 1 4.0257 0.7734 0.1223 48 1 5.4653 1.2867 -2.0979 49 1 7.8785 0.9889 -4.3843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713491129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:16 Heat of formation + Delta-G solvation = -1.062090 kcal Electronic energy + Delta-G solvation = -29107.704131 eV Core-core repulsion = 25036.122774 eV Total energy + Delta-G solvation = -4071.581357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42611 -39.30811 -38.69070 -36.91958 -35.66719 -34.77573 -33.80428 -31.37650 -31.19271 -30.82245 -29.42766 -27.93063 -26.47658 -25.29626 -24.15909 -22.88804 -22.16159 -21.30059 -20.93168 -19.87358 -19.14091 -17.85354 -17.71344 -17.09614 -16.42776 -16.06966 -15.75468 -15.50655 -15.12019 -14.88250 -14.71858 -14.63071 -14.25932 -13.95516 -13.75986 -13.68837 -13.38396 -13.35213 -13.08299 -12.84739 -12.45291 -12.35676 -12.23927 -12.16767 -11.71773 -11.59669 -11.47201 -11.43998 -11.31811 -11.08513 -10.90214 -10.78807 -10.53259 -10.41975 -10.19697 -10.18160 -9.43869 -9.18637 -9.15767 -8.92131 -8.42273 -7.97901 -7.90380 -6.39358 -3.80083 0.92463 1.02450 2.39616 2.88287 3.21831 3.27422 3.31863 3.41007 3.81403 3.91806 4.01848 4.06327 4.09620 4.26241 4.59082 4.69372 4.74443 4.81243 4.86206 4.99725 5.12998 5.22867 5.24006 5.26793 5.35125 5.35786 5.42489 5.52054 5.58304 5.64696 5.76600 5.78941 5.82451 5.86677 5.90917 5.98109 6.01263 6.11195 6.14120 6.26212 6.30622 6.34660 6.45726 6.56086 6.61075 7.25433 7.26894 7.36958 7.57216 8.03197 8.08259 8.63944 9.20246 9.56677 10.08381 10.78319 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.001900 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.053691 B =14733.283749 C =15713.953671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.120 3.880 6 N -0.724 5.724 7 C 0.529 3.471 8 O -0.528 6.528 9 C -0.068 4.068 10 H 0.122 0.878 11 C -0.060 4.060 12 C -0.116 4.116 13 C -0.097 4.097 14 C -0.112 4.112 15 C -0.121 4.121 16 C -0.085 4.085 17 C -0.127 4.127 18 C 0.042 3.958 19 C 0.443 3.557 20 O -0.576 6.576 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.022 0.978 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.048 0.952 48 H 0.392 0.608 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 8.817 23.672 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.084 4.084 5 C -0.003 4.003 6 N -0.376 5.376 7 C 0.314 3.686 8 O -0.404 6.404 9 C -0.089 4.089 10 H 0.140 0.860 11 C -0.097 4.097 12 C -0.116 4.116 13 C -0.115 4.115 14 C -0.130 4.130 15 C -0.139 4.139 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.089 4.089 19 C 0.229 3.771 20 O -0.460 6.460 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.107 0.893 47 H 0.066 0.934 48 H 0.225 0.775 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.455 9.371 22.135 27.547 hybrid contribution 1.034 -0.888 0.418 1.426 sum -12.421 8.483 22.553 27.109 Atomic orbital electron populations 1.21690 0.95270 1.01085 1.01573 1.22164 0.96003 0.87880 1.01375 1.61448 1.20044 1.19571 1.22584 1.22247 1.01444 0.93599 0.91122 1.21387 1.02737 0.92251 0.83954 1.45884 1.72866 1.06539 1.12305 1.19996 0.76552 0.82222 0.89846 1.90742 1.48296 1.61449 1.39882 1.21177 0.93622 0.98028 0.96034 0.86004 1.21460 0.90711 0.93329 1.04230 1.21841 0.95820 0.95606 0.98342 1.20446 0.91115 0.99974 0.99983 1.21040 0.97907 0.94279 0.99758 1.20994 0.97476 0.94608 1.00822 1.20443 0.91090 0.99795 0.98973 1.21346 0.94128 0.95900 1.01404 1.21949 0.88920 1.01929 0.96105 1.19698 0.84569 0.84957 0.87912 1.90508 1.34069 1.53196 1.68200 1.41864 1.07453 1.59413 1.11363 1.19641 0.95111 1.41974 0.86070 0.87963 1.25259 0.94817 0.97506 1.00390 1.69601 0.98745 1.48355 1.37633 0.85921 0.77030 0.79228 0.82051 1.19877 1.21011 1.19965 0.91384 0.92843 0.93949 0.88441 0.95941 0.94310 0.90257 0.90154 0.91101 0.76782 0.87009 0.88480 0.86140 0.85535 0.85476 0.86194 0.89296 0.93393 0.77521 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.96 37.16 0.37 -1.52 16 2 C 0.05 0.83 5.18 -3.82 -0.02 0.81 16 3 N -0.51 -8.21 4.10 -236.07 -0.97 -9.18 16 4 C 0.04 0.53 4.92 -3.82 -0.02 0.51 16 5 C 0.12 1.52 5.70 -4.04 -0.02 1.49 16 6 N -0.72 -7.22 5.56 -60.29 -0.33 -7.56 16 7 C 0.53 6.22 7.35 -10.99 -0.08 6.13 16 8 O -0.53 -8.55 15.66 5.56 0.09 -8.46 16 9 C -0.07 -0.58 4.31 -93.65 -0.40 -0.98 16 10 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.06 -0.52 7.66 -28.62 -0.22 -0.74 16 12 C -0.12 -1.09 7.42 -104.96 -0.78 -1.87 16 13 C -0.10 -0.82 10.06 -39.43 -0.40 -1.21 16 14 C -0.11 -0.84 10.04 -39.65 -0.40 -1.23 16 15 C -0.12 -0.91 10.04 -39.65 -0.40 -1.31 16 16 C -0.08 -0.70 10.06 -39.43 -0.40 -1.09 16 17 C -0.13 -1.17 6.90 -104.96 -0.72 -1.89 16 18 C 0.04 0.75 5.27 -4.97 -0.03 0.72 16 19 C 0.44 10.42 7.29 -10.98 -0.08 10.34 16 20 O -0.58 -15.36 14.12 5.55 0.08 -15.28 16 21 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 22 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 26 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.49 6.91 -51.93 -0.36 0.13 16 33 H 0.10 1.88 5.85 -51.93 -0.30 1.58 16 34 H 0.02 0.31 7.99 -51.93 -0.42 -0.11 16 35 H 0.04 0.41 8.00 -51.93 -0.42 -0.01 16 36 H 0.08 0.81 6.58 -51.93 -0.34 0.47 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.00 6.95 -51.93 -0.36 0.64 16 39 H 0.40 2.69 8.47 -40.82 -0.35 2.34 16 40 H 0.11 1.16 7.01 -51.93 -0.36 0.79 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.09 1.47 6.71 -51.93 -0.35 1.12 16 47 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 49 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -34.23 404.91 -10.54 -44.77 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -7.31 Total: 11.59 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.83 Total: 0.17 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.64 Total: -55.12 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.23 -10.54 -44.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713491129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.712 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds