Wall clock time and date at job start Wed Apr 1 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46791 * 2 1 4 4 C 1.46898 * 110.99522 * 76.03433 * 3 2 1 5 5 C 1.53001 * 109.46745 * 199.54136 * 4 3 2 6 6 N 1.46499 * 109.47150 * 174.88262 * 5 4 3 7 7 C 1.34774 * 120.00236 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99920 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00189 * 180.02562 * 7 6 5 10 10 H 1.08992 * 112.88899 * 51.66680 * 9 7 6 11 11 C 1.52271 * 113.20690 * 183.03697 * 9 7 6 12 12 C 1.50555 * 87.23439 * 114.71044 * 11 9 7 13 13 C 1.38813 * 147.30457 * 179.53785 * 12 11 9 14 14 C 1.38069 * 120.09120 * 180.02562 * 13 12 11 15 15 C 1.38232 * 119.98149 * 0.02562 * 14 13 12 16 16 C 1.38069 * 119.98164 * 359.97438 * 15 14 13 17 17 C 1.37715 * 92.77056 * 359.79614 * 12 11 9 18 18 C 1.46899 * 110.99590 * 199.97847 * 3 2 1 19 19 C 1.50707 * 109.46784 * 66.05520 * 18 3 2 20 20 O 1.21290 * 120.00336 * 359.97438 * 19 18 3 21 21 N 1.34779 * 119.99577 * 179.97438 * 19 18 3 22 22 C 1.37101 * 119.99491 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00287 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99705 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00115 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99902 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46935 * 59.99939 * 26 24 22 28 28 H 1.48498 * 109.46916 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46962 * 300.00009 * 26 24 22 30 30 H 1.08998 * 109.47517 * 54.87216 * 1 2 3 31 31 H 1.09004 * 109.47180 * 174.86838 * 1 2 3 32 32 H 1.08996 * 109.47326 * 294.86542 * 1 2 3 33 33 H 1.09003 * 109.46826 * 240.00637 * 2 1 3 34 34 H 1.08994 * 109.47453 * 120.00887 * 2 1 3 35 35 H 1.08999 * 109.47573 * 79.54150 * 4 3 2 36 36 H 1.09000 * 109.47424 * 319.53938 * 4 3 2 37 37 H 1.09004 * 109.47158 * 54.88638 * 5 4 3 38 38 H 1.08997 * 109.47587 * 294.88348 * 5 4 3 39 39 H 0.97005 * 120.00197 * 0.02562 * 6 5 4 40 40 H 1.08996 * 113.97259 * 0.06327 * 11 9 7 41 41 H 1.08997 * 113.20236 * 229.24467 * 11 9 7 42 42 H 1.08001 * 119.95403 * 0.02562 * 13 12 11 43 43 H 1.08002 * 120.00739 * 180.02562 * 14 13 12 44 44 H 1.08004 * 120.01264 * 180.02562 * 15 14 13 45 45 H 1.07992 * 119.95412 * 179.97438 * 16 15 14 46 46 H 1.09007 * 109.47177 * 186.04436 * 18 3 2 47 47 H 1.08997 * 109.47504 * 306.05076 * 18 3 2 48 48 H 0.96993 * 120.00453 * 359.97438 * 21 19 18 49 49 H 0.96999 * 120.00297 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8830 1.9916 1.3309 5 6 1.9279 3.5156 1.2038 6 7 1.6698 4.1226 2.5119 7 6 1.6596 5.4640 2.6422 8 8 1.8636 6.1686 1.6764 9 6 1.3947 6.0884 3.9880 10 1 2.0343 5.6879 4.7744 11 6 1.3462 7.6097 3.9445 12 6 -0.1068 7.5015 4.3236 13 6 -1.2916 8.1651 4.6114 14 6 -2.4282 7.4474 4.9265 15 6 -2.3867 6.0660 4.9562 16 6 -1.2089 5.4048 4.6702 17 6 -0.0643 6.1254 4.3582 18 6 3.4103 1.4517 -0.4686 19 6 3.4711 1.0500 -1.9199 20 8 2.4559 0.7384 -2.5060 21 7 4.6536 1.0371 -2.5664 22 6 4.7090 0.6712 -3.8866 23 1 3.8051 0.3929 -4.4082 24 6 5.9279 0.6584 -4.5533 25 7 7.0276 0.9974 -3.9188 26 14 6.0034 0.1605 -6.3522 27 1 5.1639 1.0840 -7.1570 28 1 7.4091 0.2285 -6.8261 29 1 5.4971 -1.2273 -6.5033 30 1 -0.3634 0.5913 -0.8405 31 1 -0.3634 -1.0236 -0.0919 32 1 -0.3634 0.4321 0.9324 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.7005 1.6560 1.9689 36 1 0.9320 1.6916 1.7711 37 1 1.1677 3.8436 0.4947 38 1 2.9119 3.8218 0.8490 39 1 1.5062 3.5591 3.2843 40 1 1.5079 8.0297 2.9518 41 1 1.9627 8.0810 4.7098 42 1 -1.3244 9.2444 4.5887 43 1 -3.3494 7.9651 5.1497 44 1 -3.2756 5.5040 5.2023 45 1 -1.1769 4.3256 4.6940 46 1 3.7826 2.4702 -0.3577 47 1 4.0257 0.7734 0.1223 48 1 5.4653 1.2867 -2.0979 49 1 7.8785 0.9889 -4.3843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713491129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:14 Heat of formation + Delta-G solvation = -24.984960 kcal Electronic energy + Delta-G solvation = -29108.741505 eV Core-core repulsion = 25036.122774 eV Total energy + Delta-G solvation = -4072.618731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.12575 -40.53856 -39.98910 -38.35286 -36.34554 -35.99646 -35.63427 -33.30476 -32.15913 -31.70832 -30.61279 -28.66921 -27.81297 -26.38840 -25.67939 -23.80562 -22.93666 -22.31898 -21.89174 -20.97719 -20.58852 -19.85866 -18.54282 -17.90079 -17.67027 -17.26474 -16.90875 -16.50098 -16.25993 -16.21125 -15.91994 -15.73788 -15.56648 -15.36258 -15.21037 -14.72758 -14.51285 -14.06697 -13.91710 -13.88995 -13.67839 -13.52650 -13.43108 -13.07678 -12.96491 -12.89023 -12.80745 -12.67104 -12.56749 -12.42972 -12.14732 -12.01189 -11.93084 -11.76113 -11.53263 -11.40135 -11.08945 -10.26078 -10.15805 -9.98976 -9.75457 -9.54693 -9.23113 -8.45802 -5.94260 0.32209 0.43302 1.39259 1.40785 1.50404 1.51740 1.98579 2.06669 2.29507 2.79053 2.89170 3.16671 3.21021 3.37720 3.42991 3.45957 3.82692 3.91388 4.05280 4.16687 4.20893 4.21887 4.27547 4.29034 4.39260 4.46847 4.56998 4.59704 4.65845 4.69022 4.72263 4.80094 4.81509 4.90505 4.95587 5.01567 5.05185 5.15778 5.22075 5.36491 5.41111 5.42328 5.45714 5.57638 5.73608 5.89877 6.05525 6.09105 6.21430 6.49067 6.61431 7.13753 7.18752 7.57556 8.13466 8.71441 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.001900 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.053691 B =14733.283749 C =15713.953671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.054 3.946 5 C 0.128 3.872 6 N -0.707 5.707 7 C 0.525 3.475 8 O -0.581 6.581 9 C -0.056 4.056 10 H 0.156 0.844 11 C -0.063 4.063 12 C -0.140 4.140 13 C -0.113 4.113 14 C -0.117 4.117 15 C -0.127 4.127 16 C -0.095 4.095 17 C -0.141 4.141 18 C 0.056 3.944 19 C 0.441 3.559 20 O -0.611 6.611 21 N -0.576 5.576 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.419 0.581 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.139 0.861 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.395 0.605 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 8.196 26.262 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 N -0.261 5.261 4 C -0.074 4.074 5 C 0.003 3.997 6 N -0.359 5.359 7 C 0.312 3.688 8 O -0.461 6.461 9 C -0.077 4.077 10 H 0.174 0.826 11 C -0.099 4.099 12 C -0.141 4.141 13 C -0.131 4.131 14 C -0.135 4.135 15 C -0.145 4.145 16 C -0.113 4.113 17 C -0.141 4.141 18 C -0.075 4.075 19 C 0.228 3.772 20 O -0.497 6.497 21 N -0.214 5.214 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.256 0.744 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.167 0.833 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.119 0.881 47 H 0.090 0.910 48 H 0.229 0.771 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.038 8.728 24.789 29.794 hybrid contribution 1.108 -0.668 -0.333 1.336 sum -12.929 8.060 24.456 28.813 Atomic orbital electron populations 1.21636 0.93845 1.01667 1.01779 1.22091 0.97166 0.87521 1.00521 1.61359 1.18828 1.20266 1.25602 1.22248 1.03741 0.92147 0.89225 1.21126 1.00729 0.93176 0.84642 1.45685 1.71843 1.06331 1.12044 1.20627 0.75341 0.82346 0.90511 1.90723 1.50716 1.62691 1.41921 1.21167 0.94196 0.97631 0.94682 0.82628 1.21471 0.91153 0.93729 1.03596 1.22081 0.96401 0.96324 0.99247 1.20740 0.91275 1.00888 1.00180 1.21391 0.98435 0.94669 0.98960 1.21367 0.98143 0.94883 1.00107 1.20766 0.90931 1.00941 0.98644 1.21472 0.94547 0.95951 1.02139 1.21782 0.90864 1.02867 0.92008 1.20773 0.83320 0.82961 0.90155 1.90482 1.35185 1.54219 1.69837 1.41945 1.08297 1.60218 1.10912 1.19607 0.94876 1.43992 0.87610 0.90332 1.26038 0.94134 0.96979 1.04292 1.69666 0.99091 1.48385 1.39065 0.84998 0.77562 0.78795 0.77032 1.19934 1.19493 1.19569 0.94352 0.91540 0.91045 0.92861 0.93055 0.91647 0.87841 0.93195 0.92850 0.74406 0.89506 0.86112 0.85063 0.83344 0.83215 0.84309 0.88104 0.90956 0.77136 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.96 71.98 0.72 -2.67 16 2 C 0.05 1.63 5.18 86.30 0.45 2.07 16 3 N -0.54 -16.52 4.10 -900.78 -3.70 -20.22 16 4 C 0.05 1.12 4.92 86.30 0.42 1.55 16 5 C 0.13 3.10 5.70 86.38 0.49 3.59 16 6 N -0.71 -12.77 5.56 -463.06 -2.57 -15.34 16 7 C 0.52 11.99 7.35 87.66 0.64 12.64 16 8 O -0.58 -19.45 15.66 -3.03 -0.05 -19.50 16 9 C -0.06 -0.87 4.31 -12.76 -0.05 -0.92 16 10 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 11 C -0.06 -1.05 7.66 29.37 0.23 -0.83 16 12 C -0.14 -2.55 7.42 -20.08 -0.15 -2.70 16 13 C -0.11 -1.80 10.06 22.37 0.22 -1.57 16 14 C -0.12 -1.54 10.04 22.23 0.22 -1.31 16 15 C -0.13 -1.61 10.04 22.23 0.22 -1.39 16 16 C -0.09 -1.34 10.06 22.37 0.22 -1.12 16 17 C -0.14 -2.35 6.90 -20.08 -0.14 -2.49 16 18 C 0.06 1.94 5.27 85.56 0.45 2.39 16 19 C 0.44 21.25 7.29 87.66 0.64 21.89 16 20 O -0.61 -33.95 14.12 -3.06 -0.04 -33.99 16 21 N -0.58 -30.14 5.29 -306.97 -1.62 -31.76 16 22 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 25 N -0.92 -50.58 13.05 21.66 0.28 -50.29 16 26 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.40 6.91 -2.39 -0.02 1.38 16 33 H 0.05 2.08 5.85 -2.39 -0.01 2.07 16 34 H 0.05 1.23 7.99 -2.39 -0.02 1.21 16 35 H 0.07 1.08 8.00 -2.39 -0.02 1.06 16 36 H 0.10 1.68 6.58 -2.39 -0.02 1.67 16 37 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.05 1.49 6.95 -2.39 -0.02 1.47 16 39 H 0.42 4.20 8.47 -92.70 -0.79 3.41 16 40 H 0.09 1.91 7.01 -2.39 -0.02 1.89 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 45 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.10 3.27 6.71 -2.38 -0.02 3.26 16 47 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 48 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 49 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -78.54 404.91 -0.33 -78.87 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.53 Total: 35.93 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.88 Total: 10.48 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -7.61 Total: -117.61 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.09 Total: -53.49 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -78.54 -0.33 -78.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713491129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.885 kcal (2) G-P(sol) polarization free energy of solvation -78.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds