Wall clock time and date at job start Wed Apr 1 2020 04:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46907 * 109.47045 * 2 1 4 4 C 1.46900 * 110.99973 * 76.02565 * 3 2 1 5 5 C 1.52998 * 109.46945 * 199.54922 * 4 3 2 6 6 N 1.46497 * 109.47272 * 174.89049 * 5 4 3 7 7 C 1.34771 * 120.00262 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00397 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00090 * 180.27105 * 7 6 5 10 10 H 1.08999 * 112.82927 * 309.39128 * 9 7 6 11 11 C 1.53522 * 113.58867 * 178.27984 * 9 7 6 12 12 C 1.51615 * 87.24472 * 245.40892 * 11 9 7 13 13 C 1.38379 * 147.52633 * 180.02562 * 12 11 9 14 14 C 1.38090 * 120.32726 * 179.97438 * 13 12 11 15 15 C 1.38253 * 119.95218 * 0.02562 * 14 13 12 16 16 C 1.38092 * 119.95772 * 0.02562 * 15 14 13 17 17 C 1.38250 * 120.40676 * 359.92929 * 16 15 14 18 18 C 1.46900 * 110.99888 * 199.98269 * 3 2 1 19 19 C 1.50699 * 109.47157 * 66.04375 * 18 3 2 20 20 O 1.21295 * 120.00079 * 0.02562 * 19 18 3 21 21 N 1.34773 * 119.99902 * 179.97438 * 19 18 3 22 22 C 1.37101 * 120.00113 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99960 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99969 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00058 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00189 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47064 * 89.99803 * 26 24 22 28 28 H 1.48498 * 109.47230 * 209.99770 * 26 24 22 29 29 H 1.48500 * 109.46716 * 329.99747 * 26 24 22 30 30 H 1.09001 * 109.47288 * 54.87379 * 1 2 3 31 31 H 1.08999 * 109.46522 * 174.87492 * 1 2 3 32 32 H 1.08994 * 109.47226 * 294.87148 * 1 2 3 33 33 H 1.08998 * 109.47232 * 240.00380 * 2 1 3 34 34 H 1.09001 * 109.47143 * 119.99446 * 2 1 3 35 35 H 1.08994 * 109.46826 * 79.54797 * 4 3 2 36 36 H 1.08999 * 109.47287 * 319.54843 * 4 3 2 37 37 H 1.09002 * 109.47082 * 54.88874 * 5 4 3 38 38 H 1.09003 * 109.46843 * 294.88688 * 5 4 3 39 39 H 0.97006 * 119.99825 * 359.97438 * 6 5 4 40 40 H 1.08996 * 113.58843 * 359.97438 * 11 9 7 41 41 H 1.09001 * 113.58962 * 130.81879 * 11 9 7 42 42 H 1.08001 * 119.83605 * 359.96275 * 13 12 11 43 43 H 1.07997 * 120.02485 * 179.97438 * 14 13 12 44 44 H 1.08008 * 120.01810 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.83437 * 180.02562 * 16 15 14 46 46 H 1.09003 * 109.46981 * 186.04231 * 18 3 2 47 47 H 1.08996 * 109.47193 * 306.04393 * 18 3 2 48 48 H 0.97006 * 120.00269 * 0.02562 * 21 19 18 49 49 H 0.97001 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8829 1.9918 1.3308 5 6 1.9277 3.5158 1.2036 6 7 1.6697 4.1229 2.5116 7 6 1.6595 5.4643 2.6418 8 8 1.8643 6.1689 1.6761 9 6 1.4001 6.0887 3.9886 10 1 0.5080 5.6925 4.4736 11 6 1.4632 7.6226 3.9770 12 6 2.6769 7.5065 4.8781 13 6 3.6705 8.1576 5.5879 14 6 4.6033 7.4346 6.3048 15 6 4.5468 6.0532 6.3147 16 6 3.5580 5.3984 5.6073 17 6 2.6202 6.1158 4.8881 18 6 3.4103 1.4518 -0.4687 19 6 3.4712 1.0499 -1.9198 20 8 2.4559 0.7390 -2.5061 21 7 4.6536 1.0370 -2.5664 22 6 4.7089 0.6719 -3.8868 23 1 3.8049 0.3951 -4.4089 24 6 5.9281 0.6581 -4.5533 25 7 5.9812 0.3077 -5.8187 26 14 7.4918 1.1362 -3.6501 27 1 8.0968 -0.0720 -3.0342 28 1 8.4532 1.7372 -4.6091 29 1 7.1683 2.1235 -2.5891 30 1 -0.3634 0.5913 -0.8405 31 1 -0.3632 -1.0236 -0.0918 32 1 -0.3633 0.4322 0.9323 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.7004 1.6562 1.9688 36 1 0.9319 1.6918 1.7710 37 1 1.1676 3.8437 0.4945 38 1 2.9119 3.8219 0.8487 39 1 1.5055 3.5594 3.2839 40 1 1.6870 8.0425 2.9964 41 1 0.6076 8.0980 4.4567 42 1 3.7167 9.2366 5.5810 43 1 5.3769 7.9477 6.8567 44 1 5.2761 5.4866 6.8748 45 1 3.5155 4.3193 5.6168 46 1 3.7826 2.4702 -0.3578 47 1 4.0258 0.7735 0.1222 48 1 5.4655 1.2860 -2.0977 49 1 6.8322 0.2984 -6.2841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713491130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:21 Heat of formation + Delta-G solvation = 4.469228 kcal Electronic energy + Delta-G solvation = -29223.667003 eV Core-core repulsion = 25152.325502 eV Total energy + Delta-G solvation = -4071.341501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26307 -39.36028 -38.83065 -37.05290 -35.59125 -34.83613 -33.86333 -31.70787 -31.29098 -30.96293 -29.55690 -27.96860 -26.60299 -25.34162 -24.03016 -22.91842 -22.17618 -21.34707 -20.96218 -19.92613 -19.33514 -18.30466 -17.72886 -17.09347 -16.47814 -16.11720 -15.72162 -15.56402 -15.32714 -14.88323 -14.86484 -14.68168 -14.38392 -14.09127 -13.88079 -13.45052 -13.36178 -13.23618 -13.17713 -12.88395 -12.55170 -12.44405 -12.41866 -12.27179 -11.99407 -11.80317 -11.65118 -11.49608 -11.36298 -11.23285 -10.90578 -10.88023 -10.61764 -10.55982 -10.22712 -9.96030 -9.51341 -9.24908 -9.21787 -8.92681 -8.55517 -8.16756 -8.04812 -6.29552 -3.80770 0.87820 1.01388 2.33474 2.81736 3.04741 3.07833 3.16528 3.37997 3.73861 3.74802 3.94279 4.00124 4.02732 4.11914 4.53156 4.66329 4.67267 4.70623 4.80203 4.85373 5.00140 5.18677 5.21307 5.22284 5.28463 5.31991 5.33992 5.46569 5.47846 5.60859 5.69965 5.71963 5.73054 5.76521 5.81066 5.87856 5.97881 5.99711 6.05218 6.11569 6.21389 6.30713 6.38360 6.52013 6.58255 7.13853 7.19629 7.28391 7.59818 7.97664 8.15948 8.61645 8.96794 9.44101 9.84682 10.83549 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.002269 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.874086 B =12336.635170 C =13868.264804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.120 3.880 6 N -0.725 5.725 7 C 0.529 3.471 8 O -0.528 6.528 9 C -0.066 4.066 10 H 0.122 0.878 11 C -0.057 4.057 12 C -0.118 4.118 13 C -0.097 4.097 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.086 4.086 17 C -0.128 4.128 18 C 0.039 3.961 19 C 0.453 3.547 20 O -0.557 6.557 21 N -0.591 5.591 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.878 3.122 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 10.427 29.205 31.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 N -0.236 5.236 4 C -0.084 4.084 5 C -0.004 4.004 6 N -0.376 5.376 7 C 0.314 3.686 8 O -0.403 6.403 9 C -0.087 4.087 10 H 0.139 0.861 11 C -0.094 4.094 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.129 4.129 18 C -0.092 4.092 19 C 0.238 3.762 20 O -0.438 6.438 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.138 0.862 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.137 0.863 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.202 0.798 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.809 10.930 27.539 30.401 hybrid contribution 1.992 -0.448 1.592 2.589 sum -4.817 10.482 29.131 31.332 Atomic orbital electron populations 1.21691 0.95097 1.01232 1.01635 1.22186 0.96189 0.87701 1.01437 1.61439 1.19689 1.19744 1.22763 1.22252 1.01574 0.93598 0.90983 1.21387 1.02731 0.92223 0.84023 1.45878 1.72964 1.06542 1.12245 1.19986 0.76704 0.82216 0.89687 1.90743 1.48092 1.61459 1.40050 1.21537 0.97010 0.97958 0.92243 0.86069 1.21831 0.94502 0.93091 0.99993 1.22294 0.96675 0.95482 0.97308 1.20327 0.94055 1.00036 0.97116 1.21055 0.98555 0.94240 0.99082 1.21006 0.98371 0.94656 0.99852 1.20281 0.93804 0.99820 0.96454 1.21739 0.96817 0.95784 0.98519 1.21983 0.89374 1.01988 0.95883 1.19593 0.84240 0.84522 0.87837 1.90552 1.33642 1.51659 1.67992 1.42225 1.07197 1.61773 1.11914 1.19421 0.97268 1.42185 0.84318 0.86240 1.25032 0.97850 0.97629 0.95644 1.69621 1.26552 1.47129 1.08855 0.86689 0.83825 0.79096 0.79909 1.19696 1.20152 1.19463 0.91293 0.92732 0.93899 0.88407 0.95834 0.94333 0.90053 0.89934 0.91316 0.76748 0.87114 0.88385 0.86181 0.85496 0.85449 0.86313 0.89194 0.93271 0.79761 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.96 37.16 0.37 -1.45 16 2 C 0.05 0.78 5.18 -3.82 -0.02 0.76 16 3 N -0.51 -7.79 4.10 -236.07 -0.97 -8.76 16 4 C 0.04 0.49 4.92 -3.83 -0.02 0.47 16 5 C 0.12 1.42 5.70 -4.04 -0.02 1.40 16 6 N -0.72 -6.77 5.56 -60.30 -0.33 -7.11 16 7 C 0.53 5.93 7.36 -10.99 -0.08 5.85 16 8 O -0.53 -8.27 15.70 5.56 0.09 -8.18 16 9 C -0.07 -0.54 4.33 -92.22 -0.40 -0.94 16 10 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.06 -0.47 7.77 -27.17 -0.21 -0.68 16 12 C -0.12 -1.08 7.49 -103.79 -0.78 -1.86 16 13 C -0.10 -0.81 10.03 -39.58 -0.40 -1.20 16 14 C -0.11 -0.83 10.04 -39.63 -0.40 -1.22 16 15 C -0.12 -0.90 10.04 -39.63 -0.40 -1.30 16 16 C -0.09 -0.69 10.02 -39.63 -0.40 -1.09 16 17 C -0.13 -1.14 6.98 -103.83 -0.73 -1.87 16 18 C 0.04 0.65 5.28 -4.98 -0.03 0.62 16 19 C 0.45 10.22 7.29 -10.99 -0.08 10.14 16 20 O -0.56 -14.64 14.12 5.54 0.08 -14.56 16 21 N -0.59 -14.16 5.09 -10.96 -0.06 -14.22 16 22 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 23 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 26 Si 0.88 19.60 27.74 -169.99 -4.72 14.89 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.46 6.91 -51.93 -0.36 0.10 16 33 H 0.10 1.82 5.85 -51.93 -0.30 1.52 16 34 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 35 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.08 0.77 6.58 -51.93 -0.34 0.42 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.93 6.95 -51.93 -0.36 0.57 16 39 H 0.40 2.44 8.47 -40.82 -0.35 2.10 16 40 H 0.11 1.09 7.04 -51.93 -0.37 0.73 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.09 1.38 6.71 -51.93 -0.35 1.03 16 47 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 48 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 49 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -35.53 402.10 -10.18 -45.71 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.27 Total: 11.37 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.83 Total: -0.05 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.58 Total: -55.23 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.72 Total: 14.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.53 -10.18 -45.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713491130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.176 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds