Wall clock time and date at job start Wed Apr 1 2020 04:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46907 * 109.47045 * 2 1 4 4 C 1.46900 * 110.99973 * 76.02565 * 3 2 1 5 5 C 1.52998 * 109.46945 * 199.54922 * 4 3 2 6 6 N 1.46497 * 109.47272 * 174.89049 * 5 4 3 7 7 C 1.34771 * 120.00262 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00397 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00090 * 180.27105 * 7 6 5 10 10 H 1.08999 * 112.82927 * 309.39128 * 9 7 6 11 11 C 1.53522 * 113.58867 * 178.27984 * 9 7 6 12 12 C 1.51615 * 87.24472 * 245.40892 * 11 9 7 13 13 C 1.38379 * 147.52633 * 180.02562 * 12 11 9 14 14 C 1.38090 * 120.32726 * 179.97438 * 13 12 11 15 15 C 1.38253 * 119.95218 * 0.02562 * 14 13 12 16 16 C 1.38092 * 119.95772 * 0.02562 * 15 14 13 17 17 C 1.38250 * 120.40676 * 359.92929 * 16 15 14 18 18 C 1.46900 * 110.99888 * 199.98269 * 3 2 1 19 19 C 1.50699 * 109.47157 * 66.04375 * 18 3 2 20 20 O 1.21295 * 120.00079 * 0.02562 * 19 18 3 21 21 N 1.34773 * 119.99902 * 179.97438 * 19 18 3 22 22 C 1.37101 * 120.00113 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99960 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99969 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00058 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00189 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47064 * 89.99803 * 26 24 22 28 28 H 1.48498 * 109.47230 * 209.99770 * 26 24 22 29 29 H 1.48500 * 109.46716 * 329.99747 * 26 24 22 30 30 H 1.09001 * 109.47288 * 54.87379 * 1 2 3 31 31 H 1.08999 * 109.46522 * 174.87492 * 1 2 3 32 32 H 1.08994 * 109.47226 * 294.87148 * 1 2 3 33 33 H 1.08998 * 109.47232 * 240.00380 * 2 1 3 34 34 H 1.09001 * 109.47143 * 119.99446 * 2 1 3 35 35 H 1.08994 * 109.46826 * 79.54797 * 4 3 2 36 36 H 1.08999 * 109.47287 * 319.54843 * 4 3 2 37 37 H 1.09002 * 109.47082 * 54.88874 * 5 4 3 38 38 H 1.09003 * 109.46843 * 294.88688 * 5 4 3 39 39 H 0.97006 * 119.99825 * 359.97438 * 6 5 4 40 40 H 1.08996 * 113.58843 * 359.97438 * 11 9 7 41 41 H 1.09001 * 113.58962 * 130.81879 * 11 9 7 42 42 H 1.08001 * 119.83605 * 359.96275 * 13 12 11 43 43 H 1.07997 * 120.02485 * 179.97438 * 14 13 12 44 44 H 1.08008 * 120.01810 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.83437 * 180.02562 * 16 15 14 46 46 H 1.09003 * 109.46981 * 186.04231 * 18 3 2 47 47 H 1.08996 * 109.47193 * 306.04393 * 18 3 2 48 48 H 0.97006 * 120.00269 * 0.02562 * 21 19 18 49 49 H 0.97001 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8829 1.9918 1.3308 5 6 1.9277 3.5158 1.2036 6 7 1.6697 4.1229 2.5116 7 6 1.6595 5.4643 2.6418 8 8 1.8643 6.1689 1.6761 9 6 1.4001 6.0887 3.9886 10 1 0.5080 5.6925 4.4736 11 6 1.4632 7.6226 3.9770 12 6 2.6769 7.5065 4.8781 13 6 3.6705 8.1576 5.5879 14 6 4.6033 7.4346 6.3048 15 6 4.5468 6.0532 6.3147 16 6 3.5580 5.3984 5.6073 17 6 2.6202 6.1158 4.8881 18 6 3.4103 1.4518 -0.4687 19 6 3.4712 1.0499 -1.9198 20 8 2.4559 0.7390 -2.5061 21 7 4.6536 1.0370 -2.5664 22 6 4.7089 0.6719 -3.8868 23 1 3.8049 0.3951 -4.4089 24 6 5.9281 0.6581 -4.5533 25 7 5.9812 0.3077 -5.8187 26 14 7.4918 1.1362 -3.6501 27 1 8.0968 -0.0720 -3.0342 28 1 8.4532 1.7372 -4.6091 29 1 7.1683 2.1235 -2.5891 30 1 -0.3634 0.5913 -0.8405 31 1 -0.3632 -1.0236 -0.0918 32 1 -0.3633 0.4322 0.9323 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.7004 1.6562 1.9688 36 1 0.9319 1.6918 1.7710 37 1 1.1676 3.8437 0.4945 38 1 2.9119 3.8219 0.8487 39 1 1.5055 3.5594 3.2839 40 1 1.6870 8.0425 2.9964 41 1 0.6076 8.0980 4.4567 42 1 3.7167 9.2366 5.5810 43 1 5.3769 7.9477 6.8567 44 1 5.2761 5.4866 6.8748 45 1 3.5155 4.3193 5.6168 46 1 3.7826 2.4702 -0.3578 47 1 4.0258 0.7735 0.1222 48 1 5.4655 1.2860 -2.0977 49 1 6.8322 0.2984 -6.2841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713491130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:20 Heat of formation + Delta-G solvation = -21.853483 kcal Electronic energy + Delta-G solvation = -29224.808442 eV Core-core repulsion = 25152.325502 eV Total energy + Delta-G solvation = -4072.482940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93215 -40.63889 -39.98088 -38.40514 -36.25593 -36.00028 -35.64710 -33.76650 -32.19125 -31.74856 -30.67559 -28.68525 -27.87469 -26.31951 -25.57823 -23.79458 -22.89966 -22.26932 -21.88305 -21.22588 -20.66495 -20.18323 -18.49964 -17.85535 -17.67769 -17.26910 -16.99992 -16.51892 -16.34792 -16.21164 -16.01799 -15.62268 -15.42043 -15.34401 -15.04323 -14.76634 -14.58102 -14.35753 -14.03076 -13.91011 -13.88070 -13.60266 -13.51536 -13.06953 -12.99401 -12.88258 -12.82238 -12.68300 -12.56881 -12.42450 -12.03451 -11.99678 -11.93288 -11.76455 -11.50389 -11.41879 -11.07160 -10.35734 -10.22463 -10.14921 -9.78678 -9.51745 -9.23930 -8.41572 -6.01787 0.30558 0.44989 1.28953 1.33451 1.42514 1.50184 1.95849 1.98585 2.21809 2.69938 2.82696 3.13027 3.14700 3.22288 3.40687 3.43089 3.81895 3.91173 4.05189 4.09148 4.20055 4.21876 4.24352 4.29502 4.32851 4.42161 4.54003 4.59114 4.64909 4.70525 4.72164 4.78790 4.82213 4.91586 4.94645 5.01406 5.06110 5.15399 5.21990 5.37298 5.42842 5.46670 5.53465 5.57710 5.73116 5.90082 6.03416 6.05402 6.19708 6.49860 6.59734 6.88670 7.19529 7.40052 7.97328 8.76127 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.002269 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.874086 B =12336.635170 C =13868.264804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.055 3.945 5 C 0.127 3.873 6 N -0.707 5.707 7 C 0.525 3.475 8 O -0.581 6.581 9 C -0.055 4.055 10 H 0.156 0.844 11 C -0.059 4.059 12 C -0.142 4.142 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.128 4.128 16 C -0.095 4.095 17 C -0.140 4.140 18 C 0.052 3.948 19 C 0.451 3.549 20 O -0.601 6.601 21 N -0.595 5.595 22 C -0.325 4.325 23 H 0.056 0.944 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.963 3.037 27 H -0.254 1.254 28 H -0.276 1.276 29 H -0.236 1.236 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.419 0.581 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.388 0.612 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 10.613 34.158 36.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.263 5.263 4 C -0.073 4.073 5 C 0.002 3.998 6 N -0.359 5.359 7 C 0.312 3.688 8 O -0.460 6.460 9 C -0.076 4.076 10 H 0.173 0.827 11 C -0.096 4.096 12 C -0.142 4.142 13 C -0.131 4.131 14 C -0.135 4.135 15 C -0.145 4.145 16 C -0.113 4.113 17 C -0.141 4.141 18 C -0.079 4.079 19 C 0.239 3.761 20 O -0.485 6.485 21 N -0.237 5.237 22 C -0.454 4.454 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.576 5.576 26 Si 0.783 3.217 27 H -0.179 1.179 28 H -0.201 1.201 29 H -0.159 1.159 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.256 0.744 40 H 0.105 0.895 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.156 0.844 46 H 0.126 0.874 47 H 0.101 0.899 48 H 0.223 0.777 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.474 11.092 32.561 34.831 hybrid contribution 1.437 -0.519 0.034 1.528 sum -4.037 10.573 32.594 34.503 Atomic orbital electron populations 1.21644 0.93981 1.01611 1.01847 1.22097 0.97141 0.87512 1.00593 1.61326 1.18843 1.20302 1.25861 1.22250 1.03929 0.92089 0.89029 1.21150 1.00813 0.93176 0.84676 1.45678 1.71885 1.06274 1.12059 1.20581 0.75538 0.82392 0.90267 1.90726 1.50509 1.62712 1.42074 1.21525 0.98207 0.97553 0.90297 0.82683 1.21852 0.95354 0.93544 0.98877 1.22549 0.97396 0.96238 0.98061 1.20615 0.94234 1.00913 0.97363 1.21396 0.98688 0.94653 0.98790 1.21372 0.98591 0.94905 0.99667 1.20599 0.93541 1.00976 0.96161 1.21873 0.97379 0.95774 0.99061 1.21872 0.91278 1.03500 0.91256 1.20868 0.82973 0.82026 0.90254 1.90538 1.35270 1.52820 1.69854 1.42072 1.08628 1.62584 1.10407 1.18988 0.95754 1.44112 0.86533 0.92576 1.26086 1.02105 0.96761 0.96461 1.69803 1.28132 1.48421 1.11207 0.85394 0.77241 0.79972 0.79115 1.17853 1.20078 1.15905 0.94448 0.91726 0.90823 0.93032 0.92674 0.91483 0.87725 0.92734 0.93059 0.74379 0.89547 0.86012 0.85197 0.83430 0.83259 0.84382 0.87375 0.89879 0.77687 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.96 71.98 0.72 -2.58 16 2 C 0.05 1.52 5.18 86.30 0.45 1.97 16 3 N -0.54 -15.32 4.10 -900.79 -3.69 -19.02 16 4 C 0.05 0.99 4.92 86.30 0.42 1.42 16 5 C 0.13 2.76 5.70 86.38 0.49 3.25 16 6 N -0.71 -11.34 5.56 -463.07 -2.57 -13.91 16 7 C 0.53 11.10 7.36 87.66 0.65 11.74 16 8 O -0.58 -18.44 15.70 -3.03 -0.05 -18.49 16 9 C -0.06 -0.78 4.33 -11.83 -0.05 -0.83 16 10 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 11 C -0.06 -0.92 7.77 30.31 0.24 -0.69 16 12 C -0.14 -2.45 7.49 -19.32 -0.14 -2.60 16 13 C -0.11 -1.74 10.03 22.27 0.22 -1.51 16 14 C -0.12 -1.49 10.04 22.24 0.22 -1.27 16 15 C -0.13 -1.54 10.04 22.24 0.22 -1.32 16 16 C -0.09 -1.26 10.02 22.24 0.22 -1.04 16 17 C -0.14 -2.19 6.98 -19.35 -0.14 -2.33 16 18 C 0.05 1.62 5.28 85.56 0.45 2.07 16 19 C 0.45 20.65 7.29 87.66 0.64 21.29 16 20 O -0.60 -33.32 14.12 -3.08 -0.04 -33.36 16 21 N -0.59 -28.67 5.09 -306.98 -1.56 -30.23 16 22 C -0.32 -19.32 10.16 84.04 0.85 -18.47 16 23 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 24 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 25 N -0.93 -57.23 13.96 21.66 0.30 -56.92 16 26 Si 0.96 39.76 27.74 68.60 1.90 41.66 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 28 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.24 -8.37 6.52 99.48 0.65 -7.72 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.35 6.91 -2.39 -0.02 1.33 16 33 H 0.05 1.95 5.85 -2.39 -0.01 1.93 16 34 H 0.06 1.20 7.99 -2.39 -0.02 1.18 16 35 H 0.07 0.92 8.00 -2.39 -0.02 0.90 16 36 H 0.10 1.46 6.58 -2.39 -0.02 1.44 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.31 6.95 -2.39 -0.02 1.29 16 39 H 0.42 3.38 8.47 -92.70 -0.79 2.59 16 40 H 0.09 1.78 7.04 -2.39 -0.02 1.76 16 41 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.11 3.01 6.71 -2.39 -0.02 3.00 16 47 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 48 H 0.39 15.63 5.76 -92.70 -0.53 15.10 16 49 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -86.42 402.10 -0.17 -86.59 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.39 Total: 34.98 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.94 Total: 8.70 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -7.53 Total: -120.08 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.09 Total: -51.85 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.90 Total: 41.66 kcal Total: -86.42 -0.17 -86.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713491130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.739 kcal (2) G-P(sol) polarization free energy of solvation -86.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds