Wall clock time and date at job start Wed Apr 1 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 5 5 O 1.21270 * 120.00172 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99638 * 359.97438 * 4 3 2 7 7 C 1.50702 * 109.46665 * 180.02562 * 6 4 3 8 8 C 1.38351 * 119.85088 * 269.71955 * 7 6 4 9 9 C 1.37965 * 120.14009 * 179.76646 * 8 7 6 10 10 C 1.39573 * 119.85254 * 0.51596 * 9 8 7 11 11 C 1.47855 * 120.14314 * 179.72285 * 10 9 8 12 12 N 1.34773 * 119.99677 * 0.02562 * 11 10 9 13 13 O 1.21547 * 119.99677 * 180.02562 * 11 10 9 14 14 C 1.39570 * 119.71374 * 359.74028 * 10 9 8 15 15 C 1.37957 * 119.85150 * 0.02562 * 14 10 9 16 16 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 17 17 H 1.09003 * 110.64865 * 1.69057 * 16 3 2 18 18 C 1.55161 * 110.71922 * 125.02488 * 16 3 2 19 19 C 1.54911 * 101.58027 * 153.86271 * 18 16 3 20 20 N 1.47419 * 104.83457 * 322.99149 * 19 18 16 21 21 C 1.36941 * 125.64848 * 204.16917 * 20 19 18 22 22 H 1.07998 * 120.00087 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99728 * 359.94965 * 21 20 19 24 24 N 1.31614 * 120.00305 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99743 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47072 * 90.00391 * 25 23 21 27 27 H 1.48505 * 109.47194 * 210.00469 * 25 23 21 28 28 H 1.48501 * 109.47543 * 330.00723 * 25 23 21 29 29 C 1.47021 * 108.70521 * 24.12730 * 20 19 18 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 35 35 H 1.09004 * 109.46731 * 300.00166 * 6 4 3 36 36 H 1.08993 * 109.47109 * 60.00140 * 6 4 3 37 37 H 1.08000 * 119.93461 * 0.02562 * 8 7 6 38 38 H 1.08001 * 120.07051 * 180.23076 * 9 8 7 39 39 H 0.97003 * 120.00666 * 0.02562 * 12 11 10 40 40 H 0.97001 * 119.99483 * 179.97438 * 12 11 10 41 41 H 1.07995 * 120.07625 * 180.02562 * 14 10 9 42 42 H 1.08003 * 119.92833 * 179.97438 * 15 14 10 43 43 H 1.09000 * 111.00348 * 271.93828 * 18 16 3 44 44 H 1.09003 * 111.00422 * 35.78979 * 18 16 3 45 45 H 1.09001 * 110.36453 * 204.15069 * 19 18 16 46 46 H 1.09008 * 110.45913 * 81.87943 * 19 18 16 47 47 H 0.97007 * 120.00239 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.88437 * 239.52652 * 29 20 19 49 49 H 1.08995 * 110.01021 * 118.43057 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6477 3.1598 -1.1671 6 6 1.9923 1.3060 -2.4723 7 6 2.3192 2.2292 -3.6177 8 6 1.3358 3.0468 -4.1454 9 6 1.6297 3.8978 -5.1908 10 6 2.9197 3.9248 -5.7231 11 6 3.2402 4.8298 -6.8475 12 7 2.2859 5.6314 -7.3603 13 8 4.3644 4.8508 -7.3092 14 6 3.9058 3.0934 -5.1895 15 6 3.5999 2.2507 -4.1410 16 6 2.2625 2.0718 1.2687 17 1 2.0606 1.4104 2.1114 18 6 3.7149 2.6144 1.3277 19 6 3.5626 3.8044 2.3078 20 7 2.2471 4.3890 1.9902 21 6 1.8679 5.6818 2.2358 22 1 0.8772 6.0148 1.9640 23 6 2.7568 6.5639 2.8347 24 7 3.9642 6.1580 3.1660 25 14 2.2392 8.3270 3.1705 26 1 1.6285 8.4149 4.5213 27 1 3.4294 9.2130 3.1067 28 1 1.2483 8.7550 2.1506 29 6 1.4100 3.3546 1.3650 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6229 0.4187 -2.5298 36 1 0.9445 1.0115 -2.5302 37 1 0.3370 3.0220 -3.7354 38 1 0.8621 4.5383 -5.5995 39 1 1.3888 5.6149 -6.9916 40 1 2.4963 6.2254 -8.0978 41 1 4.9059 3.1099 -5.5966 42 1 4.3618 1.6066 -3.7274 43 1 4.3965 1.8637 1.7276 44 1 4.0445 2.9561 0.3465 45 1 4.3532 4.5363 2.1415 46 1 3.5827 3.4533 3.3395 47 1 4.5855 6.7746 3.5842 48 1 1.1081 3.6747 0.3679 49 1 0.5278 3.1684 1.9774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714052959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:55 Heat of formation + Delta-G solvation = -10.557397 kcal Electronic energy + Delta-G solvation = -30676.937389 eV Core-core repulsion = 26604.944285 eV Total energy + Delta-G solvation = -4071.993105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.50487 -39.90259 -38.38029 -36.69433 -35.48358 -34.12859 -32.93658 -32.13983 -31.03060 -30.30991 -29.06247 -28.31168 -26.75920 -24.44202 -23.66742 -22.96917 -22.80267 -21.05002 -20.38329 -20.06770 -18.57569 -18.30341 -17.08337 -16.99900 -16.63922 -16.13863 -15.55595 -15.18121 -15.09659 -14.89236 -14.60179 -14.51819 -14.16155 -13.86143 -13.73885 -13.68276 -13.39931 -13.30015 -12.75691 -12.46767 -12.40148 -12.15791 -11.92795 -11.84298 -11.58075 -11.40550 -11.24365 -11.10378 -10.91794 -10.78511 -10.71058 -10.43321 -10.24904 -10.02975 -9.94884 -9.75448 -9.48362 -9.17897 -9.08025 -8.80039 -8.54052 -8.28590 -6.68722 -5.53258 -2.93451 0.69079 1.28901 2.67491 2.89661 3.18349 3.29980 3.46781 3.51437 3.54028 3.76295 4.44111 4.57026 4.59341 4.65030 4.70523 4.82121 4.83917 5.00786 5.11741 5.18519 5.26580 5.31498 5.45884 5.47163 5.54823 5.62397 5.65077 5.67300 5.68734 5.84576 5.86747 5.93398 6.06867 6.11944 6.19082 6.34572 6.40364 6.53179 6.59568 6.64512 6.69313 6.75542 6.82552 7.09150 7.24353 7.58458 7.70374 7.74367 7.98263 8.03647 8.48008 8.52401 9.33967 9.95447 10.60564 11.50748 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003442 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.609678 B = 8132.095430 C =10439.119224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 N -0.607 5.607 4 C 0.506 3.494 5 O -0.496 6.496 6 C -0.108 4.108 7 C -0.031 4.031 8 C -0.112 4.112 9 C -0.083 4.083 10 C -0.146 4.146 11 C 0.566 3.434 12 N -0.852 5.852 13 O -0.543 6.543 14 C -0.055 4.055 15 C -0.112 4.112 16 C 0.136 3.864 17 H 0.086 0.914 18 C -0.156 4.156 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.214 4.214 22 H 0.074 0.926 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.136 3.864 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.401 0.599 40 H 0.404 0.596 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.009 0.991 47 H 0.250 0.750 48 H 0.034 0.966 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 -15.190 -16.214 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.342 5.342 4 C 0.293 3.707 5 O -0.369 6.369 6 C -0.148 4.148 7 C -0.031 4.031 8 C -0.130 4.130 9 C -0.101 4.101 10 C -0.149 4.149 11 C 0.353 3.647 12 N -0.416 5.416 13 O -0.421 6.421 14 C -0.074 4.074 15 C -0.130 4.130 16 C 0.033 3.967 17 H 0.104 0.896 18 C -0.196 4.196 19 C 0.033 3.967 20 N -0.321 5.321 21 C -0.343 4.343 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.743 3.257 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.009 3.991 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.231 0.769 40 H 0.234 0.766 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.026 0.974 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.506 -14.474 -16.297 22.747 hybrid contribution -0.856 1.047 0.279 1.381 sum -7.361 -13.427 -16.018 22.160 Atomic orbital electron populations 1.22244 0.96053 1.01919 1.02900 1.21559 0.94398 0.82974 1.02988 1.48035 1.66342 1.13663 1.06123 1.20283 0.78841 0.87088 0.84536 1.90859 1.42559 1.16776 1.86688 1.20868 1.04236 0.98432 0.91269 1.19555 0.93741 0.95647 0.94196 1.20903 0.99618 0.96092 0.96393 1.21170 0.95151 0.97715 0.96087 1.19807 0.95267 1.00739 0.99090 1.18332 0.84388 0.79698 0.82287 1.43754 1.14214 1.44284 1.39385 1.90804 1.21295 1.68413 1.61612 1.21195 0.99006 0.92841 0.94346 1.20978 0.95923 0.99771 0.96374 1.22188 0.97614 0.93710 0.83220 0.89561 1.23440 0.93808 0.99294 1.03025 1.21830 0.90603 0.91974 0.92312 1.44281 1.10787 1.06851 1.70223 1.19038 0.97883 0.84981 1.32358 0.90782 1.24745 0.96236 0.98309 1.01472 1.69797 1.05897 1.33785 1.47755 0.86097 0.77169 0.84535 0.77861 1.21770 1.21696 1.20818 1.21446 0.92766 0.88264 0.96650 0.91876 0.92543 0.91742 0.90643 0.90333 0.88046 0.88034 0.85494 0.85754 0.76917 0.76551 0.84690 0.85378 0.93046 0.89891 0.87622 0.97354 0.93891 0.94769 0.96888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.10 0.92 5.92 -4.04 -0.02 0.90 16 3 N -0.61 -8.38 2.54 -164.02 -0.42 -8.79 16 4 C 0.51 7.59 6.77 -10.98 -0.07 7.52 16 5 O -0.50 -10.19 12.38 5.57 0.07 -10.12 16 6 C -0.11 -1.09 4.38 -29.03 -0.13 -1.21 16 7 C -0.03 -0.36 4.38 -104.53 -0.46 -0.82 16 8 C -0.11 -1.24 9.68 -39.64 -0.38 -1.62 16 9 C -0.08 -0.86 9.54 -39.18 -0.37 -1.23 16 10 C -0.15 -1.78 5.87 -104.97 -0.62 -2.40 16 11 C 0.57 7.03 8.05 -12.33 -0.10 6.93 16 12 N -0.85 -6.77 8.82 30.53 0.27 -6.50 16 13 O -0.54 -8.77 17.18 5.32 0.09 -8.68 16 14 C -0.06 -0.70 9.60 -39.19 -0.38 -1.07 16 15 C -0.11 -1.34 9.68 -39.64 -0.38 -1.72 16 16 C 0.14 2.41 3.45 -66.09 -0.23 2.18 16 17 H 0.09 1.37 7.86 -51.93 -0.41 0.96 16 18 C -0.16 -3.21 6.40 -24.58 -0.16 -3.37 16 19 C 0.16 4.07 5.89 -2.53 -0.01 4.06 16 20 N -0.60 -16.20 3.39 -170.07 -0.58 -16.77 16 21 C -0.21 -6.31 10.27 -15.06 -0.15 -6.47 16 22 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 24 N -0.92 -28.16 10.09 55.49 0.56 -27.60 16 25 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.14 3.02 6.49 -3.06 -0.02 3.00 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.45 7.22 -51.93 -0.38 0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.48 6.44 -51.93 -0.33 0.15 16 34 H 0.08 0.64 7.94 -51.93 -0.41 0.22 16 35 H 0.10 0.76 7.34 -51.93 -0.38 0.38 16 36 H 0.10 0.78 7.13 -51.93 -0.37 0.41 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 0.87 6.41 -52.49 -0.34 0.53 16 39 H 0.40 2.11 6.86 -40.82 -0.28 1.83 16 40 H 0.40 2.61 8.93 -40.82 -0.36 2.25 16 41 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 42 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.88 5.81 -51.93 -0.30 1.57 16 45 H 0.11 3.11 5.87 -51.93 -0.30 2.80 16 46 H 0.01 0.23 8.14 -51.92 -0.42 -0.20 16 47 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.03 0.82 6.28 -51.93 -0.33 0.49 16 49 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -38.62 392.07 -9.43 -48.04 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.10 Total: 3.22 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -3.21 Total: 3.19 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.16 Total: -59.66 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.16 Total: -18.79 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.62 -9.43 -48.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714052959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.487 kcal (2) G-P(sol) polarization free energy of solvation -38.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds