Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 5 5 O 1.21270 * 120.00172 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99638 * 359.97438 * 4 3 2 7 7 C 1.50702 * 109.46665 * 180.02562 * 6 4 3 8 8 C 1.38351 * 119.85088 * 269.71955 * 7 6 4 9 9 C 1.37965 * 120.14009 * 179.76646 * 8 7 6 10 10 C 1.39573 * 119.85254 * 0.51596 * 9 8 7 11 11 C 1.47855 * 120.14314 * 179.72285 * 10 9 8 12 12 N 1.34773 * 119.99677 * 0.02562 * 11 10 9 13 13 O 1.21547 * 119.99677 * 180.02562 * 11 10 9 14 14 C 1.39570 * 119.71374 * 359.74028 * 10 9 8 15 15 C 1.37957 * 119.85150 * 0.02562 * 14 10 9 16 16 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 17 17 H 1.09003 * 110.64865 * 1.69057 * 16 3 2 18 18 C 1.55161 * 110.71922 * 125.02488 * 16 3 2 19 19 C 1.54911 * 101.58027 * 153.86271 * 18 16 3 20 20 N 1.47419 * 104.83457 * 322.99149 * 19 18 16 21 21 C 1.36941 * 125.64848 * 204.16917 * 20 19 18 22 22 H 1.07998 * 120.00087 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99728 * 359.94965 * 21 20 19 24 24 N 1.31614 * 120.00305 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99743 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47072 * 90.00391 * 25 23 21 27 27 H 1.48505 * 109.47194 * 210.00469 * 25 23 21 28 28 H 1.48501 * 109.47543 * 330.00723 * 25 23 21 29 29 C 1.47021 * 108.70521 * 24.12730 * 20 19 18 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 35 35 H 1.09004 * 109.46731 * 300.00166 * 6 4 3 36 36 H 1.08993 * 109.47109 * 60.00140 * 6 4 3 37 37 H 1.08000 * 119.93461 * 0.02562 * 8 7 6 38 38 H 1.08001 * 120.07051 * 180.23076 * 9 8 7 39 39 H 0.97003 * 120.00666 * 0.02562 * 12 11 10 40 40 H 0.97001 * 119.99483 * 179.97438 * 12 11 10 41 41 H 1.07995 * 120.07625 * 180.02562 * 14 10 9 42 42 H 1.08003 * 119.92833 * 179.97438 * 15 14 10 43 43 H 1.09000 * 111.00348 * 271.93828 * 18 16 3 44 44 H 1.09003 * 111.00422 * 35.78979 * 18 16 3 45 45 H 1.09001 * 110.36453 * 204.15069 * 19 18 16 46 46 H 1.09008 * 110.45913 * 81.87943 * 19 18 16 47 47 H 0.97007 * 120.00239 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.88437 * 239.52652 * 29 20 19 49 49 H 1.08995 * 110.01021 * 118.43057 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6477 3.1598 -1.1671 6 6 1.9923 1.3060 -2.4723 7 6 2.3192 2.2292 -3.6177 8 6 1.3358 3.0468 -4.1454 9 6 1.6297 3.8978 -5.1908 10 6 2.9197 3.9248 -5.7231 11 6 3.2402 4.8298 -6.8475 12 7 2.2859 5.6314 -7.3603 13 8 4.3644 4.8508 -7.3092 14 6 3.9058 3.0934 -5.1895 15 6 3.5999 2.2507 -4.1410 16 6 2.2625 2.0718 1.2687 17 1 2.0606 1.4104 2.1114 18 6 3.7149 2.6144 1.3277 19 6 3.5626 3.8044 2.3078 20 7 2.2471 4.3890 1.9902 21 6 1.8679 5.6818 2.2358 22 1 0.8772 6.0148 1.9640 23 6 2.7568 6.5639 2.8347 24 7 3.9642 6.1580 3.1660 25 14 2.2392 8.3270 3.1705 26 1 1.6285 8.4149 4.5213 27 1 3.4294 9.2130 3.1067 28 1 1.2483 8.7550 2.1506 29 6 1.4100 3.3546 1.3650 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6229 0.4187 -2.5298 36 1 0.9445 1.0115 -2.5302 37 1 0.3370 3.0220 -3.7354 38 1 0.8621 4.5383 -5.5995 39 1 1.3888 5.6149 -6.9916 40 1 2.4963 6.2254 -8.0978 41 1 4.9059 3.1099 -5.5966 42 1 4.3618 1.6066 -3.7274 43 1 4.3965 1.8637 1.7276 44 1 4.0445 2.9561 0.3465 45 1 4.3532 4.5363 2.1415 46 1 3.5827 3.4533 3.3395 47 1 4.5855 6.7746 3.5842 48 1 1.1081 3.6747 0.3679 49 1 0.5278 3.1684 1.9774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714052959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = -38.368815 kcal Electronic energy + Delta-G solvation = -30678.143383 eV Core-core repulsion = 26604.944285 eV Total energy + Delta-G solvation = -4073.199098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55261 -40.95993 -39.39334 -38.30850 -36.67842 -35.04171 -34.44159 -33.48280 -31.87597 -31.61663 -30.60053 -29.58016 -28.25392 -26.36999 -24.64092 -23.80731 -23.65556 -22.36386 -22.08824 -21.35842 -19.70422 -19.18145 -18.92014 -17.94070 -17.82529 -17.31768 -16.77279 -16.49439 -16.13303 -16.06278 -15.89263 -15.81886 -15.47205 -15.27136 -14.71738 -14.60168 -14.56983 -14.26184 -14.12615 -13.72877 -13.63554 -13.38716 -13.32727 -13.03491 -12.92181 -12.78181 -12.67333 -12.46912 -12.21754 -12.13061 -12.04443 -12.02011 -11.90049 -11.76945 -11.35705 -11.25021 -10.79814 -10.74093 -10.46436 -9.94058 -9.73384 -9.51409 -8.85160 -7.76567 -5.19946 -0.20523 0.42926 1.41946 1.45595 1.53828 1.72758 1.80327 2.13121 2.49657 2.50666 2.86940 3.32316 3.61416 3.74475 3.77653 3.79398 3.91529 3.96224 4.01526 4.16020 4.18421 4.29138 4.32037 4.40300 4.51425 4.59753 4.62819 4.67605 4.73672 4.78557 4.84719 4.92763 5.02575 5.03571 5.08283 5.09059 5.19433 5.25754 5.34365 5.42848 5.49639 5.54878 5.66204 5.80295 5.80670 5.85488 5.91681 6.31517 6.35066 6.60936 7.11090 7.22319 7.41487 7.79938 8.43778 9.25179 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003442 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.609678 B = 8132.095430 C =10439.119224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.501 3.499 5 O -0.561 6.561 6 C -0.095 4.095 7 C -0.041 4.041 8 C -0.122 4.122 9 C -0.080 4.080 10 C -0.163 4.163 11 C 0.561 3.439 12 N -0.829 5.829 13 O -0.592 6.592 14 C -0.077 4.077 15 C -0.122 4.122 16 C 0.154 3.846 17 H 0.114 0.886 18 C -0.141 4.141 19 C 0.161 3.839 20 N -0.619 5.619 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.069 4.069 24 N -0.950 5.950 25 Si 0.980 3.020 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.273 1.273 29 C 0.135 3.865 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.417 0.583 40 H 0.413 0.587 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.062 0.938 46 H -0.007 1.007 47 H 0.246 0.754 48 H 0.017 0.983 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -17.413 -16.819 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.290 3.710 5 O -0.439 6.439 6 C -0.134 4.134 7 C -0.042 4.042 8 C -0.140 4.140 9 C -0.098 4.098 10 C -0.166 4.166 11 C 0.348 3.652 12 N -0.393 5.393 13 O -0.473 6.473 14 C -0.096 4.096 15 C -0.140 4.140 16 C 0.050 3.950 17 H 0.132 0.868 18 C -0.180 4.180 19 C 0.035 3.965 20 N -0.344 5.344 21 C -0.365 4.365 22 H 0.092 0.908 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.808 3.192 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.198 1.198 29 C 0.009 3.991 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.176 0.824 39 H 0.249 0.751 40 H 0.245 0.755 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.011 0.989 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.029 -16.754 -16.921 25.466 hybrid contribution -0.162 1.726 0.457 1.793 sum -9.191 -15.027 -16.465 24.112 Atomic orbital electron populations 1.22222 0.95264 1.03429 1.01911 1.21975 0.94976 0.79991 1.05477 1.48094 1.65813 1.15363 1.04258 1.21162 0.77204 0.86479 0.86151 1.90847 1.45514 1.19858 1.87689 1.20901 1.06931 0.98331 0.87284 1.19836 0.93618 0.96143 0.94614 1.21273 1.00521 0.95818 0.96411 1.21527 0.95017 0.97665 0.95589 1.19951 0.96151 1.01011 0.99480 1.18500 0.84302 0.80067 0.82294 1.43565 1.14139 1.42815 1.38821 1.90774 1.23303 1.70090 1.63176 1.21302 0.99047 0.93965 0.95296 1.21175 0.96723 0.99923 0.96216 1.21848 0.94168 0.92626 0.86382 0.86838 1.23183 0.96635 0.97895 1.00313 1.21578 0.89087 0.92912 0.92899 1.44584 1.12119 1.07293 1.70446 1.19399 0.98065 0.86641 1.32373 0.90810 1.25629 0.96345 1.02451 1.01683 1.70077 1.06780 1.34792 1.48316 0.85059 0.76753 0.79325 0.78091 1.20722 1.21969 1.19784 1.21574 0.93185 0.89270 0.95094 0.94068 0.92404 0.88949 0.87138 0.88972 0.84694 0.84769 0.83584 0.82436 0.75087 0.75473 0.85719 0.84265 0.90067 0.92050 0.91950 0.98868 0.94457 0.96463 0.96348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 71.98 0.74 -1.24 16 2 C 0.10 1.24 5.92 86.38 0.51 1.76 16 3 N -0.60 -14.88 2.54 -791.24 -2.01 -16.89 16 4 C 0.50 14.00 6.77 87.66 0.59 14.59 16 5 O -0.56 -23.17 12.38 -3.00 -0.04 -23.20 16 6 C -0.10 -1.57 4.38 29.10 0.13 -1.44 16 7 C -0.04 -0.89 4.38 -19.81 -0.09 -0.97 16 8 C -0.12 -2.45 9.68 22.23 0.22 -2.24 16 9 C -0.08 -1.53 9.54 22.53 0.21 -1.31 16 10 C -0.16 -3.97 5.87 -20.09 -0.12 -4.09 16 11 C 0.56 14.03 8.05 86.79 0.70 14.73 16 12 N -0.83 -12.18 8.82 -175.60 -1.55 -13.73 16 13 O -0.59 -19.88 17.18 -3.86 -0.07 -19.95 16 14 C -0.08 -2.02 9.60 22.52 0.22 -1.80 16 15 C -0.12 -2.86 9.68 22.23 0.22 -2.65 16 16 C 0.15 5.23 3.45 46.18 0.16 5.39 16 17 H 0.11 3.26 7.86 -2.39 -0.02 3.24 16 18 C -0.14 -5.77 6.40 31.99 0.20 -5.57 16 19 C 0.16 8.57 5.89 86.86 0.51 9.08 16 20 N -0.62 -34.59 3.39 -691.99 -2.35 -36.94 16 21 C -0.24 -14.29 10.27 84.03 0.86 -13.42 16 22 H 0.07 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 24 N -0.95 -60.14 10.09 21.65 0.22 -59.93 16 25 Si 0.98 48.47 29.55 68.60 2.03 50.49 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 29 C 0.14 6.02 6.49 86.73 0.56 6.58 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 7.22 -2.39 -0.02 0.65 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.72 6.44 -2.39 -0.02 0.71 16 34 H 0.09 1.01 7.94 -2.39 -0.02 0.99 16 35 H 0.14 1.34 7.34 -2.38 -0.02 1.32 16 36 H 0.13 1.36 7.13 -2.39 -0.02 1.35 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.16 1.76 6.41 -2.91 -0.02 1.74 16 39 H 0.42 3.46 6.86 -92.71 -0.64 2.83 16 40 H 0.41 4.87 8.93 -92.71 -0.83 4.04 16 41 H 0.12 3.37 7.65 -2.91 -0.02 3.35 16 42 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 43 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.06 2.82 5.81 -2.39 -0.01 2.81 16 45 H 0.06 3.87 5.87 -2.39 -0.01 3.86 16 46 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 47 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 48 H 0.02 0.83 6.28 -2.39 -0.02 0.82 16 49 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -91.29 392.07 1.86 -89.44 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.47 Total: 17.02 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 6.09 Total: 13.69 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -5.69 Total: -127.49 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.10 Total: -43.15 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.49 kcal Total: -91.29 1.86 -89.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714052959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.068 kcal (2) G-P(sol) polarization free energy of solvation -91.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds