Wall clock time and date at job start Wed Apr 1 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47008 * 2 1 4 4 C 1.34773 * 120.00555 * 275.12990 * 3 2 1 5 5 O 1.21280 * 120.00721 * 185.18450 * 4 3 2 6 6 C 1.50701 * 119.99682 * 5.18371 * 4 3 2 7 7 C 1.50700 * 109.47313 * 180.02562 * 6 4 3 8 8 C 1.38358 * 119.85476 * 269.73028 * 7 6 4 9 9 C 1.37962 * 120.14356 * 179.72125 * 8 7 6 10 10 C 1.39571 * 119.85109 * 0.54901 * 9 8 7 11 11 C 1.47854 * 120.13953 * 179.70165 * 10 9 8 12 12 N 1.34769 * 120.00237 * 0.02562 * 11 10 9 13 13 O 1.21557 * 119.99619 * 180.02562 * 11 10 9 14 14 C 1.39567 * 119.71541 * 359.72393 * 10 9 8 15 15 C 1.37963 * 119.85032 * 0.02562 * 14 10 9 16 16 C 1.46503 * 119.99916 * 95.12930 * 3 2 1 17 17 H 1.09001 * 110.91564 * 190.39063 * 16 3 2 18 18 C 1.55154 * 111.00412 * 66.48633 * 16 3 2 19 19 C 1.54325 * 102.94347 * 277.42957 * 18 16 3 20 20 N 1.47024 * 107.27032 * 337.80449 * 19 18 16 21 21 C 1.36936 * 125.65023 * 178.97473 * 20 19 18 22 22 H 1.07995 * 120.00082 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99607 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00469 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99461 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47650 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47135 * 120.00782 * 25 23 21 28 28 H 1.48509 * 109.47126 * 239.99774 * 25 23 21 29 29 C 1.47422 * 108.70039 * 358.94194 * 20 19 18 30 30 H 1.08995 * 109.47565 * 299.99834 * 1 2 3 31 31 H 1.09010 * 109.46911 * 60.00118 * 1 2 3 32 32 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47138 * 240.00245 * 2 1 3 34 34 H 1.08997 * 109.47118 * 120.00108 * 2 1 3 35 35 H 1.09001 * 109.47368 * 299.99970 * 6 4 3 36 36 H 1.09000 * 109.47063 * 60.00255 * 6 4 3 37 37 H 1.08004 * 119.92743 * 359.97438 * 8 7 6 38 38 H 1.08002 * 120.07018 * 180.24599 * 9 8 7 39 39 H 0.97001 * 119.99873 * 359.97438 * 12 11 10 40 40 H 0.97003 * 120.00002 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.07713 * 179.97438 * 14 10 9 42 42 H 1.08005 * 119.92245 * 179.97438 * 15 14 10 43 43 H 1.09000 * 110.72345 * 159.06668 * 18 16 3 44 44 H 1.09003 * 110.72100 * 35.79467 * 18 16 3 45 45 H 1.09004 * 109.88140 * 97.22297 * 19 18 16 46 46 H 1.09001 * 109.88528 * 218.38938 * 19 18 16 47 47 H 0.96991 * 120.00293 * 179.97438 * 24 23 21 48 48 H 1.09007 * 110.36678 * 142.96555 * 29 20 19 49 49 H 1.09000 * 110.37162 * 265.28561 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1446 2.0514 -1.1624 5 8 2.6365 3.1599 -1.1731 6 6 1.6744 1.4234 -2.4491 7 6 1.9278 2.3714 -3.5929 8 6 0.9553 3.2850 -3.9586 9 6 1.1832 4.1595 -5.0010 10 6 2.3936 4.1135 -5.6944 11 6 2.6420 5.0433 -6.8169 12 7 1.6989 5.9381 -7.1720 13 8 3.6969 5.0006 -7.4193 14 6 3.3682 3.1857 -5.3241 15 6 3.1296 2.3203 -4.2764 16 6 2.3694 2.0340 1.2637 17 1 2.5371 3.1010 1.1170 18 6 3.6074 1.3604 1.9124 19 6 2.9970 0.1456 2.6427 20 7 1.5746 0.4414 2.8682 21 6 0.6718 -0.3930 3.4713 22 1 -0.3554 -0.0816 3.5906 23 6 1.0769 -1.6392 3.9294 24 7 2.3289 -2.0186 3.7846 25 14 -0.1545 -2.7771 4.7529 26 1 -1.4854 -2.1196 4.7944 27 1 -0.2510 -4.0429 3.9823 28 1 0.2941 -3.0735 6.1372 29 6 1.2815 1.7854 2.3381 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2187 0.4946 -2.6202 36 1 0.6073 1.2120 -2.3816 37 1 0.0172 3.3163 -3.4242 38 1 0.4247 4.8749 -5.2829 39 1 0.8569 5.9719 -6.6915 40 1 1.8620 6.5484 -7.9082 41 1 4.3068 3.1447 -5.8569 42 1 3.8829 1.6015 -3.9891 43 1 4.0867 2.0356 2.6213 44 1 4.3144 1.0361 1.1488 45 1 3.0967 -0.7468 2.0248 46 1 3.5004 -0.0041 3.5978 47 1 2.6120 -2.8891 4.1050 48 1 0.2899 1.8070 1.8859 49 1 1.3540 2.5301 3.1308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714052964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:03 Heat of formation + Delta-G solvation = -10.535929 kcal Electronic energy + Delta-G solvation = -30582.165672 eV Core-core repulsion = 26510.173498 eV Total energy + Delta-G solvation = -4071.992174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.51781 -39.91318 -38.52597 -37.38239 -34.64065 -34.22097 -32.98925 -32.21915 -31.10274 -30.30356 -28.93959 -28.39024 -27.17302 -24.52714 -23.65505 -22.88825 -22.61722 -21.02672 -20.31005 -20.12556 -18.58844 -18.37405 -17.14616 -17.10350 -16.98068 -15.99569 -15.62949 -15.35051 -15.16652 -14.97905 -14.72180 -14.52849 -14.01615 -13.85946 -13.77163 -13.52160 -13.38048 -13.09879 -12.69239 -12.49667 -12.13325 -12.06012 -11.92274 -11.86575 -11.75592 -11.30123 -11.24181 -11.02487 -10.94583 -10.83711 -10.48782 -10.34130 -10.17284 -10.10458 -10.04982 -9.90749 -9.70914 -9.40573 -9.16120 -8.89201 -8.72688 -8.20759 -6.91376 -5.80208 -3.13803 0.61902 1.21102 2.60432 2.85199 3.19838 3.31881 3.33750 3.39813 3.41744 3.72448 4.41950 4.42069 4.51560 4.63945 4.76713 4.82992 5.04450 5.14589 5.32272 5.34691 5.39290 5.41285 5.46229 5.52660 5.62041 5.68203 5.80301 5.83117 5.85940 5.93559 6.03629 6.11805 6.17264 6.23851 6.30288 6.37033 6.41461 6.43551 6.50140 6.59348 6.67604 6.71678 6.85584 6.99368 7.10208 7.47762 7.51077 7.73356 7.84708 7.93944 8.14750 8.45747 9.12714 9.72535 10.38317 11.31090 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026846 B = 0.002222 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.729274 B =12601.049843 C =12875.752796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.087 3.913 3 N -0.584 5.584 4 C 0.514 3.486 5 O -0.547 6.547 6 C -0.111 4.111 7 C -0.027 4.027 8 C -0.114 4.114 9 C -0.084 4.084 10 C -0.149 4.149 11 C 0.566 3.434 12 N -0.853 5.853 13 O -0.543 6.543 14 C -0.055 4.055 15 C -0.114 4.114 16 C 0.125 3.875 17 H 0.096 0.904 18 C -0.156 4.156 19 C 0.174 3.826 20 N -0.601 5.601 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.921 5.921 25 Si 0.908 3.092 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.123 3.877 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.401 0.599 40 H 0.404 0.596 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.252 0.748 48 H 0.048 0.952 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 9.244 -17.340 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.035 4.035 3 N -0.316 5.316 4 C 0.302 3.698 5 O -0.426 6.426 6 C -0.150 4.150 7 C -0.027 4.027 8 C -0.132 4.132 9 C -0.102 4.102 10 C -0.152 4.152 11 C 0.353 3.647 12 N -0.417 5.417 13 O -0.421 6.421 14 C -0.074 4.074 15 C -0.132 4.132 16 C 0.020 3.980 17 H 0.114 0.886 18 C -0.196 4.196 19 C 0.050 3.950 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.003 4.003 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.231 0.769 40 H 0.234 0.766 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.980 9.434 -17.498 20.101 hybrid contribution -1.062 -0.484 0.577 1.301 sum -4.042 8.951 -16.921 19.564 Atomic orbital electron populations 1.22186 0.96050 1.02142 1.01434 1.22050 0.94804 0.81677 1.04982 1.47872 1.63713 1.14492 1.05491 1.20318 0.78885 0.85755 0.84880 1.90685 1.44854 1.20291 1.86721 1.20888 1.04369 0.98730 0.91027 1.19634 0.93806 0.95129 0.94158 1.20930 0.99658 0.95441 0.97186 1.21164 0.95671 0.98129 0.95276 1.19794 0.96597 0.99967 0.98816 1.18343 0.83269 0.80101 0.83007 1.43756 1.20034 1.39068 1.38805 1.90809 1.25557 1.70955 1.54818 1.21204 0.98371 0.92540 0.95310 1.21023 0.96680 0.99805 0.95659 1.22228 0.96066 0.96800 0.82870 0.88612 1.23270 0.96761 1.00057 0.99477 1.21222 0.83807 0.92174 0.97806 1.44549 1.06271 1.12960 1.69061 1.19018 0.90531 0.95001 1.30582 0.90492 1.24760 0.96409 0.97790 1.01318 1.69957 1.14522 1.20716 1.51660 0.86104 0.80168 0.80828 0.79002 1.20590 1.21795 1.21873 1.21951 0.96122 0.89160 0.93089 0.90879 0.94485 0.91926 0.92498 0.85139 0.87749 0.87506 0.85428 0.85780 0.76936 0.76552 0.84700 0.85289 0.91490 0.91941 0.93179 0.93864 0.93754 0.93368 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.99 37.16 0.37 -1.98 16 2 C 0.09 1.36 5.04 -4.04 -0.02 1.34 16 3 N -0.58 -9.30 2.52 -163.68 -0.41 -9.71 16 4 C 0.51 7.81 7.62 -10.99 -0.08 7.72 16 5 O -0.55 -10.03 15.47 5.56 0.09 -9.94 16 6 C -0.11 -1.24 4.50 -29.03 -0.13 -1.37 16 7 C -0.03 -0.30 4.38 -104.53 -0.46 -0.76 16 8 C -0.11 -1.16 9.68 -39.64 -0.38 -1.54 16 9 C -0.08 -0.76 9.54 -39.19 -0.37 -1.13 16 10 C -0.15 -1.61 5.87 -104.97 -0.62 -2.23 16 11 C 0.57 6.19 8.05 -12.33 -0.10 6.09 16 12 N -0.85 -5.44 8.82 30.53 0.27 -5.17 16 13 O -0.54 -8.00 17.18 5.32 0.09 -7.91 16 14 C -0.06 -0.64 9.60 -39.19 -0.38 -1.02 16 15 C -0.11 -1.29 9.68 -39.64 -0.38 -1.67 16 16 C 0.12 2.18 3.61 -65.78 -0.24 1.94 16 17 H 0.10 1.69 7.12 -51.93 -0.37 1.32 16 18 C -0.16 -2.85 6.56 -24.90 -0.16 -3.01 16 19 C 0.17 3.85 4.30 -3.06 -0.01 3.83 16 20 N -0.60 -13.55 2.19 -170.07 -0.37 -13.92 16 21 C -0.22 -5.56 10.28 -15.06 -0.15 -5.72 16 22 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -24.97 10.31 55.49 0.57 -24.40 16 25 Si 0.91 20.76 29.55 -169.99 -5.02 15.73 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 C 0.12 2.36 6.05 -2.53 -0.02 2.35 16 30 H 0.07 1.24 5.62 -51.93 -0.29 0.95 16 31 H 0.04 0.44 6.32 -51.92 -0.33 0.12 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.75 6.70 -51.93 -0.35 0.40 16 34 H 0.13 2.57 3.73 -51.93 -0.19 2.38 16 35 H 0.10 1.01 7.22 -51.93 -0.37 0.64 16 36 H 0.11 1.03 6.30 -51.93 -0.33 0.70 16 37 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 0.68 6.41 -52.49 -0.34 0.34 16 39 H 0.40 1.47 6.86 -40.82 -0.28 1.19 16 40 H 0.40 2.00 8.93 -40.82 -0.36 1.64 16 41 H 0.14 1.52 7.65 -52.48 -0.40 1.12 16 42 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.20 5.81 -51.93 -0.30 0.90 16 46 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 47 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 48 H 0.05 0.90 6.00 -51.92 -0.31 0.59 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -32.21 384.62 -8.93 -41.14 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.70 Total: 5.81 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.23 Total: 2.58 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.06 Total: -53.20 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.21 -8.93 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714052964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.603 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds