Wall clock time and date at job start Wed Apr 1 2020 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47008 * 2 1 4 4 C 1.34773 * 120.00555 * 275.12990 * 3 2 1 5 5 O 1.21280 * 120.00721 * 185.18450 * 4 3 2 6 6 C 1.50701 * 119.99682 * 5.18371 * 4 3 2 7 7 C 1.50700 * 109.47313 * 180.02562 * 6 4 3 8 8 C 1.38358 * 119.85476 * 269.73028 * 7 6 4 9 9 C 1.37962 * 120.14356 * 179.72125 * 8 7 6 10 10 C 1.39571 * 119.85109 * 0.54901 * 9 8 7 11 11 C 1.47854 * 120.13953 * 179.70165 * 10 9 8 12 12 N 1.34769 * 120.00237 * 0.02562 * 11 10 9 13 13 O 1.21557 * 119.99619 * 180.02562 * 11 10 9 14 14 C 1.39567 * 119.71541 * 359.72393 * 10 9 8 15 15 C 1.37963 * 119.85032 * 0.02562 * 14 10 9 16 16 C 1.46503 * 119.99916 * 95.12930 * 3 2 1 17 17 H 1.09001 * 110.91564 * 190.39063 * 16 3 2 18 18 C 1.55154 * 111.00412 * 66.48633 * 16 3 2 19 19 C 1.54325 * 102.94347 * 277.42957 * 18 16 3 20 20 N 1.47024 * 107.27032 * 337.80449 * 19 18 16 21 21 C 1.36936 * 125.65023 * 178.97473 * 20 19 18 22 22 H 1.07995 * 120.00082 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99607 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00469 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99461 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47650 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47135 * 120.00782 * 25 23 21 28 28 H 1.48509 * 109.47126 * 239.99774 * 25 23 21 29 29 C 1.47422 * 108.70039 * 358.94194 * 20 19 18 30 30 H 1.08995 * 109.47565 * 299.99834 * 1 2 3 31 31 H 1.09010 * 109.46911 * 60.00118 * 1 2 3 32 32 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47138 * 240.00245 * 2 1 3 34 34 H 1.08997 * 109.47118 * 120.00108 * 2 1 3 35 35 H 1.09001 * 109.47368 * 299.99970 * 6 4 3 36 36 H 1.09000 * 109.47063 * 60.00255 * 6 4 3 37 37 H 1.08004 * 119.92743 * 359.97438 * 8 7 6 38 38 H 1.08002 * 120.07018 * 180.24599 * 9 8 7 39 39 H 0.97001 * 119.99873 * 359.97438 * 12 11 10 40 40 H 0.97003 * 120.00002 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.07713 * 179.97438 * 14 10 9 42 42 H 1.08005 * 119.92245 * 179.97438 * 15 14 10 43 43 H 1.09000 * 110.72345 * 159.06668 * 18 16 3 44 44 H 1.09003 * 110.72100 * 35.79467 * 18 16 3 45 45 H 1.09004 * 109.88140 * 97.22297 * 19 18 16 46 46 H 1.09001 * 109.88528 * 218.38938 * 19 18 16 47 47 H 0.96991 * 120.00293 * 179.97438 * 24 23 21 48 48 H 1.09007 * 110.36678 * 142.96555 * 29 20 19 49 49 H 1.09000 * 110.37162 * 265.28561 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1446 2.0514 -1.1624 5 8 2.6365 3.1599 -1.1731 6 6 1.6744 1.4234 -2.4491 7 6 1.9278 2.3714 -3.5929 8 6 0.9553 3.2850 -3.9586 9 6 1.1832 4.1595 -5.0010 10 6 2.3936 4.1135 -5.6944 11 6 2.6420 5.0433 -6.8169 12 7 1.6989 5.9381 -7.1720 13 8 3.6969 5.0006 -7.4193 14 6 3.3682 3.1857 -5.3241 15 6 3.1296 2.3203 -4.2764 16 6 2.3694 2.0340 1.2637 17 1 2.5371 3.1010 1.1170 18 6 3.6074 1.3604 1.9124 19 6 2.9970 0.1456 2.6427 20 7 1.5746 0.4414 2.8682 21 6 0.6718 -0.3930 3.4713 22 1 -0.3554 -0.0816 3.5906 23 6 1.0769 -1.6392 3.9294 24 7 2.3289 -2.0186 3.7846 25 14 -0.1545 -2.7771 4.7529 26 1 -1.4854 -2.1196 4.7944 27 1 -0.2510 -4.0429 3.9823 28 1 0.2941 -3.0735 6.1372 29 6 1.2815 1.7854 2.3381 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2187 0.4946 -2.6202 36 1 0.6073 1.2120 -2.3816 37 1 0.0172 3.3163 -3.4242 38 1 0.4247 4.8749 -5.2829 39 1 0.8569 5.9719 -6.6915 40 1 1.8620 6.5484 -7.9082 41 1 4.3068 3.1447 -5.8569 42 1 3.8829 1.6015 -3.9891 43 1 4.0867 2.0356 2.6213 44 1 4.3144 1.0361 1.1488 45 1 3.0967 -0.7468 2.0248 46 1 3.5004 -0.0041 3.5978 47 1 2.6120 -2.8891 4.1050 48 1 0.2899 1.8070 1.8859 49 1 1.3540 2.5301 3.1308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714052964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:00 Heat of formation + Delta-G solvation = -30.867725 kcal Electronic energy + Delta-G solvation = -30583.047324 eV Core-core repulsion = 26510.173498 eV Total energy + Delta-G solvation = -4072.873826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.54690 -40.95956 -39.55529 -38.69108 -36.08029 -35.00804 -34.35939 -33.44540 -31.86127 -31.80374 -30.46111 -29.57741 -28.51444 -26.32857 -24.61719 -23.81899 -23.62420 -22.18989 -21.90234 -21.26124 -19.78893 -19.15322 -18.82752 -18.33827 -17.89094 -17.23306 -16.67154 -16.51813 -16.25966 -16.03603 -15.83746 -15.67231 -15.49355 -15.31428 -14.68157 -14.58801 -14.48380 -14.20651 -14.01848 -13.72072 -13.65891 -13.33854 -13.31953 -12.98659 -12.91013 -12.80994 -12.66429 -12.53072 -12.24170 -11.99211 -11.95735 -11.93094 -11.79267 -11.48136 -11.34477 -11.21479 -10.76608 -10.70913 -10.61822 -9.92942 -9.74633 -9.55862 -8.79066 -7.77129 -5.10641 -0.19105 0.44158 1.49989 1.52779 1.60571 1.68207 1.75783 2.15661 2.53419 2.54622 2.88572 3.43435 3.62011 3.66273 3.77746 3.80591 3.93298 3.96438 4.03729 4.10165 4.22498 4.28052 4.34861 4.42455 4.55962 4.60924 4.63619 4.65466 4.73509 4.82312 4.89407 4.91276 5.00651 5.05428 5.09628 5.10179 5.26203 5.31508 5.36797 5.55696 5.57147 5.59892 5.68271 5.77897 5.84013 5.85858 5.92684 6.24660 6.39550 6.60951 7.17480 7.25099 7.26524 7.83457 8.48580 9.33109 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026846 B = 0.002222 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.729274 B =12601.049843 C =12875.752796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 N -0.586 5.586 4 C 0.515 3.485 5 O -0.579 6.579 6 C -0.102 4.102 7 C -0.041 4.041 8 C -0.120 4.120 9 C -0.075 4.075 10 C -0.160 4.160 11 C 0.562 3.438 12 N -0.828 5.828 13 O -0.592 6.592 14 C -0.074 4.074 15 C -0.124 4.124 16 C 0.135 3.865 17 H 0.100 0.900 18 C -0.144 4.144 19 C 0.189 3.811 20 N -0.610 5.610 21 C -0.218 4.218 22 H 0.081 0.919 23 C -0.059 4.059 24 N -0.948 5.948 25 Si 0.966 3.034 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.303 1.303 29 C 0.125 3.875 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.417 0.583 40 H 0.413 0.587 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.002 0.998 47 H 0.244 0.756 48 H 0.056 0.944 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 10.337 -18.826 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 N -0.317 5.317 4 C 0.305 3.695 5 O -0.459 6.459 6 C -0.141 4.141 7 C -0.041 4.041 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.163 4.163 11 C 0.349 3.651 12 N -0.392 5.392 13 O -0.474 6.474 14 C -0.093 4.093 15 C -0.142 4.142 16 C 0.031 3.969 17 H 0.118 0.882 18 C -0.184 4.184 19 C 0.064 3.936 20 N -0.336 5.336 21 C -0.347 4.347 22 H 0.098 0.902 23 C -0.252 4.252 24 N -0.598 5.598 25 Si 0.796 3.204 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.231 1.231 29 C -0.001 4.001 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.180 0.820 39 H 0.250 0.750 40 H 0.245 0.755 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.021 0.979 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.423 10.571 -18.999 22.408 hybrid contribution -0.358 -0.733 1.015 1.303 sum -5.781 9.838 -17.983 21.298 Atomic orbital electron populations 1.22099 0.95068 1.02209 1.01720 1.21943 0.95544 0.81264 1.04399 1.47892 1.63905 1.14607 1.05286 1.20941 0.77809 0.85220 0.85508 1.90675 1.46227 1.21851 1.87179 1.20897 1.05791 0.98953 0.88453 1.19766 0.94140 0.95856 0.94364 1.21268 1.00171 0.94959 0.97393 1.21532 0.95501 0.98151 0.94122 1.19944 0.97302 0.99896 0.99162 1.18470 0.83236 0.80601 0.82793 1.43559 1.19650 1.37533 1.38502 1.90787 1.27652 1.72488 1.56439 1.21275 0.98668 0.93501 0.95866 1.21144 0.97214 1.00077 0.95800 1.22011 0.94604 0.96998 0.83336 0.88164 1.23137 0.97193 0.98528 0.99504 1.20910 0.83699 0.93237 0.95710 1.44660 1.06155 1.14000 1.68808 1.19271 0.91013 0.95105 1.29290 0.90152 1.25411 0.97751 0.99327 1.02734 1.70148 1.16025 1.20569 1.53070 0.85192 0.78931 0.79072 0.77223 1.19227 1.22061 1.23074 1.22035 0.97185 0.87330 0.93572 0.93407 0.91248 0.91984 0.89668 0.89174 0.86033 0.85204 0.83374 0.81972 0.75020 0.75464 0.85616 0.84796 0.90561 0.91218 0.95326 0.97932 0.94655 0.92552 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.99 71.98 0.72 -3.39 16 2 C 0.09 2.67 5.04 86.38 0.44 3.11 16 3 N -0.59 -17.50 2.52 -790.15 -1.99 -19.50 16 4 C 0.52 14.35 7.62 87.66 0.67 15.02 16 5 O -0.58 -20.08 15.47 -3.03 -0.05 -20.13 16 6 C -0.10 -1.94 4.50 29.10 0.13 -1.81 16 7 C -0.04 -0.82 4.38 -19.81 -0.09 -0.91 16 8 C -0.12 -2.03 9.68 22.23 0.22 -1.81 16 9 C -0.07 -1.11 9.54 22.53 0.21 -0.89 16 10 C -0.16 -3.23 5.87 -20.09 -0.12 -3.35 16 11 C 0.56 11.63 8.05 86.79 0.70 12.33 16 12 N -0.83 -8.51 8.82 -175.60 -1.55 -10.06 16 13 O -0.59 -17.56 17.18 -3.89 -0.07 -17.62 16 14 C -0.07 -1.70 9.60 22.53 0.22 -1.48 16 15 C -0.12 -2.69 9.68 22.23 0.22 -2.47 16 16 C 0.14 4.57 3.61 46.38 0.17 4.73 16 17 H 0.10 3.37 7.12 -2.39 -0.02 3.35 16 18 C -0.14 -5.21 6.56 31.78 0.21 -5.00 16 19 C 0.19 8.57 4.30 86.73 0.37 8.94 16 20 N -0.61 -27.62 2.19 -691.98 -1.52 -29.14 16 21 C -0.22 -10.88 10.28 84.03 0.86 -10.02 16 22 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.06 -3.09 5.49 84.86 0.47 -2.63 16 24 N -0.95 -52.99 10.31 21.65 0.22 -52.76 16 25 Si 0.97 43.01 29.55 68.60 2.03 45.04 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 29 C 0.12 4.65 6.05 86.86 0.53 5.18 16 30 H 0.05 1.53 5.62 -2.39 -0.01 1.51 16 31 H 0.07 1.39 6.32 -2.38 -0.02 1.37 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.09 2.02 6.70 -2.39 -0.02 2.00 16 34 H 0.09 3.53 3.73 -2.39 -0.01 3.52 16 35 H 0.12 1.93 7.22 -2.39 -0.02 1.91 16 36 H 0.13 1.88 6.30 -2.39 -0.02 1.87 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.16 1.00 6.41 -2.91 -0.02 0.98 16 39 H 0.42 1.53 6.86 -92.71 -0.64 0.89 16 40 H 0.41 3.16 8.93 -92.71 -0.83 2.33 16 41 H 0.13 2.98 7.65 -2.91 -0.02 2.96 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.03 1.43 5.81 -2.39 -0.01 1.41 16 46 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 47 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 48 H 0.06 2.03 6.00 -2.38 -0.01 2.02 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.30 384.62 2.54 -69.76 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.45 Total: 18.85 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.91 Total: 15.55 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.83 Total: -111.46 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.11 Total: -37.75 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -72.30 2.54 -69.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714052964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.896 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds