Wall clock time and date at job start Wed Apr 1 2020 03:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46847 * 2 1 4 4 C 1.36932 * 120.00457 * 95.48375 * 3 2 1 5 5 H 1.07996 * 120.00506 * 213.84341 * 4 3 2 6 6 C 1.38815 * 119.99777 * 33.83194 * 4 3 2 7 7 N 1.31616 * 119.99901 * 27.38428 * 6 4 3 8 8 Si 1.86796 * 120.00096 * 207.38385 * 6 4 3 9 9 H 1.48500 * 109.47391 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47335 * 300.00113 * 8 6 4 11 11 H 1.48498 * 109.47443 * 60.00050 * 8 6 4 12 12 C 1.46505 * 120.00173 * 275.48022 * 3 2 1 13 13 C 1.53003 * 109.46866 * 270.00229 * 12 3 2 14 14 C 1.53005 * 109.46968 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47113 * 179.97438 * 14 13 12 16 16 C 1.34771 * 119.99947 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00309 * 180.02562 * 16 15 14 19 19 C 1.52996 * 109.47432 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.07439 * 55.10546 * 19 18 16 21 21 N 1.46733 * 110.09981 * 293.54870 * 19 18 16 22 22 C 1.34423 * 108.74932 * 240.80281 * 21 19 18 23 23 O 1.21553 * 124.85147 * 179.97438 * 22 21 19 24 24 C 1.47545 * 110.28925 * 0.02562 * 22 21 19 25 25 C 1.39619 * 132.34361 * 180.02562 * 24 22 21 26 26 C 1.37936 * 119.82760 * 179.97438 * 25 24 22 27 27 C 1.38393 * 120.32197 * 0.02562 * 26 25 24 28 28 C 1.38472 * 120.18671 * 359.97438 * 27 26 25 29 29 C 1.37586 * 119.95621 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47339 * 60.00114 * 1 2 3 31 31 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47327 * 299.99999 * 1 2 3 33 33 H 1.09001 * 109.46704 * 240.00356 * 2 1 3 34 34 H 1.08993 * 109.47493 * 120.00178 * 2 1 3 35 35 H 0.97000 * 120.00206 * 5.79732 * 7 6 4 36 36 H 1.09002 * 109.47292 * 29.99708 * 12 3 2 37 37 H 1.08992 * 109.47369 * 150.00299 * 12 3 2 38 38 H 1.08995 * 109.47078 * 299.99593 * 13 12 3 39 39 H 1.09004 * 109.47062 * 60.00364 * 13 12 3 40 40 H 1.08995 * 109.47296 * 299.99959 * 14 13 12 41 41 H 1.09005 * 109.46983 * 59.99918 * 14 13 12 42 42 H 0.97001 * 119.99819 * 359.97438 * 15 14 13 43 43 H 1.09002 * 109.46545 * 300.00003 * 18 16 15 44 44 H 1.09002 * 109.46567 * 59.99729 * 18 16 15 45 45 H 0.97002 * 125.62531 * 60.78122 * 21 19 18 46 46 H 1.08003 * 120.08602 * 359.97097 * 25 24 22 47 47 H 1.07999 * 119.84087 * 179.97438 * 26 25 24 48 48 H 1.07994 * 119.90515 * 179.97438 * 27 26 25 49 49 H 1.07991 * 120.02651 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3533 1.9890 1.1804 5 1 2.1858 3.0481 1.3090 6 6 2.9081 1.2438 2.2118 7 7 3.5985 0.1565 1.9405 8 14 2.6748 1.7840 3.9847 9 1 3.3606 0.8258 4.8885 10 1 3.2537 3.1390 4.1695 11 1 1.2253 1.8171 4.3055 12 6 2.1482 2.1123 -1.2629 13 6 3.5472 1.8881 -1.8403 14 6 3.6827 2.6511 -3.1596 15 7 5.0225 2.4369 -3.7122 16 6 5.3712 3.0165 -4.8779 17 8 4.5760 3.7157 -5.4693 18 6 6.7492 2.7958 -5.4467 19 6 6.8847 3.5588 -6.7659 20 1 6.6483 4.6121 -6.6149 21 7 5.9913 2.9814 -7.7765 22 6 6.7331 2.5372 -8.8058 23 8 6.2882 2.0045 -9.8037 24 6 8.1646 2.7875 -8.5504 25 6 9.3139 2.5191 -9.2962 26 6 10.5517 2.8720 -8.8001 27 6 10.6597 3.4901 -7.5666 28 6 9.5243 3.7595 -6.8210 29 6 8.2849 3.4126 -7.3072 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.7913 -0.0784 1.0194 36 1 1.4012 1.7515 -1.9701 37 1 1.9952 3.1765 -1.0842 38 1 4.2942 2.2488 -1.1333 39 1 3.7002 0.8238 -2.0192 40 1 2.9358 2.2900 -3.8666 41 1 3.5295 3.7154 -2.9812 42 1 5.6589 1.8786 -3.2387 43 1 7.4961 3.1565 -4.7395 44 1 6.9022 1.7315 -5.6256 45 1 5.0249 2.9286 -7.7123 46 1 9.2341 2.0365 -10.2591 47 1 11.4409 2.6641 -9.3767 48 1 11.6322 3.7631 -7.1845 49 1 9.6117 4.2416 -5.8587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731319899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:23 Heat of formation + Delta-G solvation = -26.321479 kcal Electronic energy + Delta-G solvation = -29013.873020 eV Core-core repulsion = 24941.196333 eV Total energy + Delta-G solvation = -4072.676686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68377 -39.70510 -38.35197 -36.83392 -36.38818 -35.07034 -32.43498 -31.88204 -31.14240 -31.02778 -30.46078 -28.62796 -25.75128 -24.46344 -24.24109 -23.42229 -21.82015 -21.54319 -20.93609 -20.41713 -19.74986 -17.69889 -17.34360 -17.28489 -17.06125 -16.46025 -16.16884 -15.83288 -15.39211 -14.97781 -14.80217 -14.46629 -14.40727 -14.07115 -13.86429 -13.66333 -13.61575 -13.40155 -13.14332 -13.10394 -12.89606 -12.40921 -12.37795 -12.14777 -11.79026 -11.57020 -11.47411 -11.18325 -10.97184 -10.75418 -10.61510 -10.26772 -10.21739 -10.06953 -10.04314 -9.97322 -9.71624 -9.43987 -9.35266 -9.24028 -9.09807 -8.41741 -6.89310 -6.11655 -3.38152 0.34023 0.79899 2.43907 2.46298 2.89340 3.03776 3.40476 3.44726 3.49187 3.66216 3.66652 3.96559 4.27248 4.43354 4.52946 4.53620 4.63996 4.76156 4.86997 4.93846 5.08462 5.10275 5.17529 5.27170 5.35710 5.39840 5.45614 5.66291 5.74593 5.76601 5.81989 5.91092 6.00519 6.07378 6.10114 6.31048 6.31343 6.35064 6.43159 6.48107 6.52851 6.65151 6.72256 6.74079 6.88490 7.06298 7.30791 7.39353 7.93627 8.02689 8.06000 8.52501 9.07510 9.77286 10.22434 11.10142 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.001811 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.789779 B =15459.556158 C =16388.291290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 N -0.593 5.593 4 C -0.350 4.350 5 H 0.051 0.949 6 C -0.021 4.021 7 N -0.905 5.905 8 Si 1.060 2.940 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.293 1.293 12 C 0.153 3.847 13 C -0.149 4.149 14 C 0.120 3.880 15 N -0.722 5.722 16 C 0.511 3.489 17 O -0.547 6.547 18 C -0.149 4.149 19 C 0.189 3.811 20 H 0.113 0.887 21 N -0.706 5.706 22 C 0.558 3.442 23 O -0.530 6.530 24 C -0.154 4.154 25 C -0.047 4.047 26 C -0.126 4.126 27 C -0.088 4.088 28 C -0.100 4.100 29 C -0.080 4.080 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.268 0.732 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.402 0.598 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.431 0.569 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.439 5.625 -17.685 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.004 3.996 3 N -0.315 5.315 4 C -0.479 4.479 5 H 0.069 0.931 6 C -0.224 4.224 7 N -0.544 5.544 8 Si 0.890 3.110 9 H -0.211 1.211 10 H -0.219 1.219 11 H -0.220 1.220 12 C 0.026 3.974 13 C -0.189 4.189 14 C -0.004 4.004 15 N -0.372 5.372 16 C 0.297 3.703 17 O -0.426 6.426 18 C -0.190 4.190 19 C 0.082 3.918 20 H 0.130 0.870 21 N -0.364 5.364 22 C 0.345 3.655 23 O -0.407 6.407 24 C -0.158 4.158 25 C -0.066 4.066 26 C -0.144 4.144 27 C -0.106 4.106 28 C -0.118 4.118 29 C -0.081 4.081 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.237 0.763 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.275 0.725 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.937 5.429 -17.010 22.651 hybrid contribution -0.333 0.189 -1.219 1.277 sum 13.604 5.618 -18.228 23.429 Atomic orbital electron populations 1.22244 1.00028 0.99014 1.00797 1.20948 0.91299 0.86844 1.00554 1.43977 1.74075 1.11701 1.01722 1.19861 1.40192 0.95491 0.92360 0.93079 1.25857 0.94414 0.97761 1.04322 1.70791 1.32876 1.28199 1.22507 0.83600 0.76156 0.75294 0.75999 1.21124 1.21936 1.21980 1.20782 0.91889 0.96533 0.88211 1.22505 1.03037 0.99414 0.93972 1.21522 0.82389 1.00852 0.95616 1.46178 1.16892 1.51045 1.23101 1.20464 0.89171 0.79644 0.81062 1.90696 1.52962 1.38894 1.60039 1.22062 0.96369 1.03631 0.96948 1.19737 0.85660 0.99330 0.87033 0.86988 1.45966 1.10183 1.60994 1.19223 1.18325 0.86554 0.77837 0.82796 1.90814 1.77839 1.43218 1.28835 1.20477 0.94494 1.03732 0.97074 1.20901 0.90432 0.96159 0.99155 1.21178 0.97316 0.99426 0.96475 1.21364 0.98545 0.96561 0.94160 1.20365 0.90130 1.00640 1.00646 1.20410 0.94323 0.97991 0.95365 0.94577 0.94478 0.92910 0.95912 0.90008 0.92107 0.94519 0.93551 0.91190 0.92477 0.91917 0.91629 0.76341 0.86951 0.87881 0.72502 0.84954 0.84907 0.84805 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.23 37.16 0.38 -2.81 16 2 C 0.13 2.91 5.45 -4.04 -0.02 2.89 16 3 N -0.59 -14.00 2.26 -173.24 -0.39 -14.39 16 4 C -0.35 -9.28 9.40 -15.06 -0.14 -9.42 16 5 H 0.05 1.39 7.96 -52.49 -0.42 0.97 16 6 C -0.02 -0.56 4.77 -17.43 -0.08 -0.64 16 7 N -0.90 -25.68 12.18 55.49 0.68 -25.01 16 8 Si 1.06 24.38 30.00 -169.99 -5.10 19.29 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.15 2.99 5.69 -4.04 -0.02 2.97 16 13 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 14 C 0.12 1.68 5.67 -4.04 -0.02 1.65 16 15 N -0.72 -8.27 5.56 -60.29 -0.33 -8.60 16 16 C 0.51 5.71 7.71 -10.99 -0.08 5.63 16 17 O -0.55 -7.84 14.84 5.56 0.08 -7.76 16 18 C -0.15 -1.12 5.41 -27.88 -0.15 -1.28 16 19 C 0.19 1.61 3.07 -68.90 -0.21 1.40 16 20 H 0.11 0.94 7.98 -51.93 -0.41 0.53 16 21 N -0.71 -7.65 5.70 -55.86 -0.32 -7.97 16 22 C 0.56 7.01 8.34 -12.62 -0.11 6.90 16 23 O -0.53 -8.54 18.04 5.32 0.10 -8.45 16 24 C -0.15 -1.53 6.26 -105.05 -0.66 -2.19 16 25 C -0.05 -0.38 10.10 -39.18 -0.40 -0.78 16 26 C -0.13 -0.72 10.02 -39.63 -0.40 -1.12 16 27 C -0.09 -0.45 10.05 -39.44 -0.40 -0.84 16 28 C -0.10 -0.57 10.03 -39.73 -0.40 -0.97 16 29 C -0.08 -0.63 5.67 -104.27 -0.59 -1.22 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.48 8.11 -51.93 -0.42 0.05 16 34 H 0.08 2.09 5.42 -51.93 -0.28 1.81 16 35 H 0.27 7.61 7.24 -40.82 -0.30 7.31 16 36 H 0.04 0.66 8.07 -51.93 -0.42 0.25 16 37 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.43 4.93 8.00 -40.82 -0.33 4.60 16 46 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 47 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 49 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -33.34 408.24 -10.22 -43.57 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.63 Total: 5.63 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.45 Total: -2.46 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.37 Total: -55.97 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.18 Total: -16.20 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.10 Total: 19.29 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.34 -10.22 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731319899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.244 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds