Wall clock time and date at job start Wed Apr 1 2020 03:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46847 * 2 1 4 4 C 1.36932 * 120.00457 * 95.48375 * 3 2 1 5 5 H 1.07996 * 120.00506 * 213.84341 * 4 3 2 6 6 C 1.38815 * 119.99777 * 33.83194 * 4 3 2 7 7 N 1.31616 * 119.99901 * 27.38428 * 6 4 3 8 8 Si 1.86796 * 120.00096 * 207.38385 * 6 4 3 9 9 H 1.48500 * 109.47391 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47335 * 300.00113 * 8 6 4 11 11 H 1.48498 * 109.47443 * 60.00050 * 8 6 4 12 12 C 1.46505 * 120.00173 * 275.48022 * 3 2 1 13 13 C 1.53003 * 109.46866 * 270.00229 * 12 3 2 14 14 C 1.53005 * 109.46968 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47113 * 179.97438 * 14 13 12 16 16 C 1.34771 * 119.99947 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00309 * 180.02562 * 16 15 14 19 19 C 1.52996 * 109.47432 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.07439 * 55.10546 * 19 18 16 21 21 N 1.46733 * 110.09981 * 293.54870 * 19 18 16 22 22 C 1.34423 * 108.74932 * 240.80281 * 21 19 18 23 23 O 1.21553 * 124.85147 * 179.97438 * 22 21 19 24 24 C 1.47545 * 110.28925 * 0.02562 * 22 21 19 25 25 C 1.39619 * 132.34361 * 180.02562 * 24 22 21 26 26 C 1.37936 * 119.82760 * 179.97438 * 25 24 22 27 27 C 1.38393 * 120.32197 * 0.02562 * 26 25 24 28 28 C 1.38472 * 120.18671 * 359.97438 * 27 26 25 29 29 C 1.37586 * 119.95621 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47339 * 60.00114 * 1 2 3 31 31 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47327 * 299.99999 * 1 2 3 33 33 H 1.09001 * 109.46704 * 240.00356 * 2 1 3 34 34 H 1.08993 * 109.47493 * 120.00178 * 2 1 3 35 35 H 0.97000 * 120.00206 * 5.79732 * 7 6 4 36 36 H 1.09002 * 109.47292 * 29.99708 * 12 3 2 37 37 H 1.08992 * 109.47369 * 150.00299 * 12 3 2 38 38 H 1.08995 * 109.47078 * 299.99593 * 13 12 3 39 39 H 1.09004 * 109.47062 * 60.00364 * 13 12 3 40 40 H 1.08995 * 109.47296 * 299.99959 * 14 13 12 41 41 H 1.09005 * 109.46983 * 59.99918 * 14 13 12 42 42 H 0.97001 * 119.99819 * 359.97438 * 15 14 13 43 43 H 1.09002 * 109.46545 * 300.00003 * 18 16 15 44 44 H 1.09002 * 109.46567 * 59.99729 * 18 16 15 45 45 H 0.97002 * 125.62531 * 60.78122 * 21 19 18 46 46 H 1.08003 * 120.08602 * 359.97097 * 25 24 22 47 47 H 1.07999 * 119.84087 * 179.97438 * 26 25 24 48 48 H 1.07994 * 119.90515 * 179.97438 * 27 26 25 49 49 H 1.07991 * 120.02651 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3533 1.9890 1.1804 5 1 2.1858 3.0481 1.3090 6 6 2.9081 1.2438 2.2118 7 7 3.5985 0.1565 1.9405 8 14 2.6748 1.7840 3.9847 9 1 3.3606 0.8258 4.8885 10 1 3.2537 3.1390 4.1695 11 1 1.2253 1.8171 4.3055 12 6 2.1482 2.1123 -1.2629 13 6 3.5472 1.8881 -1.8403 14 6 3.6827 2.6511 -3.1596 15 7 5.0225 2.4369 -3.7122 16 6 5.3712 3.0165 -4.8779 17 8 4.5760 3.7157 -5.4693 18 6 6.7492 2.7958 -5.4467 19 6 6.8847 3.5588 -6.7659 20 1 6.6483 4.6121 -6.6149 21 7 5.9913 2.9814 -7.7765 22 6 6.7331 2.5372 -8.8058 23 8 6.2882 2.0045 -9.8037 24 6 8.1646 2.7875 -8.5504 25 6 9.3139 2.5191 -9.2962 26 6 10.5517 2.8720 -8.8001 27 6 10.6597 3.4901 -7.5666 28 6 9.5243 3.7595 -6.8210 29 6 8.2849 3.4126 -7.3072 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.7913 -0.0784 1.0194 36 1 1.4012 1.7515 -1.9701 37 1 1.9952 3.1765 -1.0842 38 1 4.2942 2.2488 -1.1333 39 1 3.7002 0.8238 -2.0192 40 1 2.9358 2.2900 -3.8666 41 1 3.5295 3.7154 -2.9812 42 1 5.6589 1.8786 -3.2387 43 1 7.4961 3.1565 -4.7395 44 1 6.9022 1.7315 -5.6256 45 1 5.0249 2.9286 -7.7123 46 1 9.2341 2.0365 -10.2591 47 1 11.4409 2.6641 -9.3767 48 1 11.6322 3.7631 -7.1845 49 1 9.6117 4.2416 -5.8587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731319899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:22 Heat of formation + Delta-G solvation = -48.244549 kcal Electronic energy + Delta-G solvation = -29014.823675 eV Core-core repulsion = 24941.196333 eV Total energy + Delta-G solvation = -4073.627342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.41053 -40.64967 -39.09620 -38.44447 -37.31015 -36.29635 -33.88026 -32.98887 -32.48035 -31.62850 -31.29207 -30.16669 -27.03788 -25.77240 -24.98911 -24.79267 -23.05187 -22.35789 -21.93746 -21.54817 -21.00126 -19.22742 -18.51668 -18.12988 -17.81361 -17.32105 -16.93273 -16.82479 -16.54218 -16.14057 -15.93487 -15.57833 -15.50695 -15.38337 -15.01087 -14.92551 -14.77780 -14.71235 -14.08885 -14.05611 -13.81658 -13.52282 -13.29431 -13.10846 -12.89226 -12.76205 -12.67039 -12.65738 -12.52214 -12.24332 -12.04061 -11.93071 -11.84635 -11.67542 -11.23907 -11.17494 -11.00645 -10.54061 -10.41498 -10.14177 -9.97482 -9.81519 -8.85185 -8.17035 -5.43839 -0.26182 0.31592 1.55819 1.60028 1.65919 1.70162 1.84939 2.09618 2.13059 2.66630 2.81042 3.05047 3.22233 3.25432 3.52315 3.61230 3.84124 3.96608 4.03640 4.12323 4.19311 4.22983 4.37351 4.39775 4.41538 4.43463 4.57144 4.60118 4.68264 4.70348 4.75940 4.76737 4.81920 4.89688 5.00122 5.01208 5.17362 5.22691 5.31724 5.35064 5.37700 5.41647 5.46480 5.55197 5.70324 5.83812 5.90277 5.94669 6.44630 6.48488 7.02243 7.13638 7.16420 7.81276 8.25416 9.00512 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.001811 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.789779 B =15459.556158 C =16388.291290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 N -0.609 5.609 4 C -0.352 4.352 5 H 0.040 0.960 6 C -0.066 4.066 7 N -0.927 5.927 8 Si 1.104 2.896 9 H -0.292 1.292 10 H -0.277 1.277 11 H -0.285 1.285 12 C 0.148 3.852 13 C -0.127 4.127 14 C 0.134 3.866 15 N -0.719 5.719 16 C 0.510 3.490 17 O -0.581 6.581 18 C -0.136 4.136 19 C 0.187 3.813 20 H 0.114 0.886 21 N -0.707 5.707 22 C 0.547 3.453 23 O -0.583 6.583 24 C -0.186 4.186 25 C -0.062 4.062 26 C -0.123 4.123 27 C -0.077 4.077 28 C -0.096 4.096 29 C -0.077 4.077 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.050 0.950 35 H 0.257 0.743 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.413 0.587 43 H 0.150 0.850 44 H 0.112 0.888 45 H 0.425 0.575 46 H 0.127 0.873 47 H 0.159 0.841 48 H 0.169 0.831 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 6.494 -17.172 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.003 3.997 3 N -0.331 5.331 4 C -0.482 4.482 5 H 0.058 0.942 6 C -0.264 4.264 7 N -0.568 5.568 8 Si 0.929 3.071 9 H -0.218 1.218 10 H -0.203 1.203 11 H -0.211 1.211 12 C 0.022 3.978 13 C -0.167 4.167 14 C 0.010 3.990 15 N -0.370 5.370 16 C 0.298 3.702 17 O -0.461 6.461 18 C -0.177 4.177 19 C 0.082 3.918 20 H 0.132 0.868 21 N -0.361 5.361 22 C 0.336 3.664 23 O -0.465 6.465 24 C -0.190 4.190 25 C -0.081 4.081 26 C -0.140 4.140 27 C -0.095 4.095 28 C -0.114 4.114 29 C -0.079 4.079 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.249 0.751 43 H 0.167 0.833 44 H 0.130 0.870 45 H 0.267 0.733 46 H 0.145 0.855 47 H 0.177 0.823 48 H 0.186 0.814 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 16.107 6.318 -16.489 23.901 hybrid contribution -0.982 -0.037 -1.435 1.739 sum 15.124 6.281 -17.924 24.279 Atomic orbital electron populations 1.22103 0.97799 1.00558 1.00524 1.20917 0.93015 0.86205 0.99562 1.44147 1.74556 1.12124 1.02319 1.19971 1.39288 0.95149 0.93826 0.94240 1.26975 0.94245 0.97731 1.07495 1.70887 1.34760 1.29421 1.21751 0.82993 0.76413 0.75460 0.72188 1.21772 1.20282 1.21113 1.20884 0.93928 0.95816 0.87156 1.22138 1.00489 0.99398 0.94697 1.21161 0.83974 0.99832 0.94074 1.46058 1.16097 1.51381 1.23445 1.21066 0.90244 0.78578 0.80325 1.90691 1.54290 1.40356 1.60803 1.22053 0.94609 1.04212 0.96782 1.19874 0.85840 0.99355 0.86773 0.86813 1.46093 1.10172 1.60320 1.19564 1.18907 0.88140 0.77040 0.82267 1.90759 1.78991 1.45900 1.30858 1.20391 0.93170 1.06457 0.98943 1.21071 0.91073 0.96768 0.99209 1.21514 0.96984 0.98470 0.97074 1.21838 0.99825 0.94561 0.93277 1.20767 0.89092 0.99758 1.01797 1.20413 0.94671 0.98289 0.94498 0.93172 0.92063 0.94720 0.94675 0.93211 0.93282 0.92829 0.94077 0.93334 0.92803 0.92019 0.92254 0.75061 0.83259 0.86990 0.73308 0.85503 0.82318 0.81374 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 10.23 71.98 0.74 -5.02 16 2 C 0.13 5.76 5.45 86.38 0.47 6.23 16 3 N -0.61 -28.73 2.26 -702.01 -1.58 -30.31 16 4 C -0.35 -18.80 9.40 84.04 0.79 -18.01 16 5 H 0.04 2.17 7.96 -2.91 -0.02 2.14 16 6 C -0.07 -3.60 4.77 84.86 0.40 -3.19 16 7 N -0.93 -53.32 12.18 21.65 0.26 -53.06 16 8 Si 1.10 49.24 30.00 68.60 2.06 51.30 16 9 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 C 0.15 5.72 5.69 86.38 0.49 6.21 16 13 C -0.13 -4.19 5.65 30.60 0.17 -4.01 16 14 C 0.13 3.64 5.67 86.38 0.49 4.13 16 15 N -0.72 -15.41 5.56 -463.05 -2.57 -17.98 16 16 C 0.51 10.68 7.71 87.66 0.68 11.36 16 17 O -0.58 -16.34 14.84 -3.04 -0.05 -16.38 16 18 C -0.14 -1.73 5.41 29.85 0.16 -1.57 16 19 C 0.19 2.96 3.07 44.24 0.14 3.09 16 20 H 0.11 1.77 7.98 -2.39 -0.02 1.76 16 21 N -0.71 -15.83 5.70 -449.13 -2.56 -18.39 16 22 C 0.55 14.57 8.34 86.75 0.72 15.29 16 23 O -0.58 -20.40 18.04 -3.88 -0.07 -20.47 16 24 C -0.19 -3.68 6.26 -20.14 -0.13 -3.80 16 25 C -0.06 -0.97 10.10 22.53 0.23 -0.74 16 26 C -0.12 -1.05 10.02 22.24 0.22 -0.83 16 27 C -0.08 -0.44 10.05 22.36 0.22 -0.22 16 28 C -0.10 -0.72 10.03 22.17 0.22 -0.50 16 29 C -0.08 -1.07 5.67 -19.63 -0.11 -1.18 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 34 H 0.05 2.58 5.42 -2.39 -0.01 2.56 16 35 H 0.26 14.89 7.24 -92.71 -0.67 14.22 16 36 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 37 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.41 7.16 8.47 -92.71 -0.79 6.37 16 43 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.42 10.29 8.00 -92.71 -0.74 9.55 16 46 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 47 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 48 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 49 H 0.16 0.26 8.06 -2.92 -0.02 0.23 16 Total: -1.00 -75.67 408.24 0.94 -74.72 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.46 Total: 23.34 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.91 Total: 7.23 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.45 Total: -119.74 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.12 Total: -36.85 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.06 Total: 51.30 kcal Total: -75.67 0.94 -74.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731319899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.478 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds