Wall clock time and date at job start Wed Apr 1 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46766 * 124.34698 * 269.72897 * 3 2 1 5 5 C 1.54663 * 105.37994 * 162.85173 * 4 3 2 6 6 H 1.08999 * 111.22682 * 267.57472 * 5 4 3 7 7 C 1.50703 * 110.82312 * 143.77061 * 5 4 3 8 8 O 1.21292 * 119.99476 * 6.35343 * 7 5 4 9 9 N 1.34775 * 120.00529 * 186.34780 * 7 5 4 10 10 C 1.46491 * 120.00206 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47166 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46822 * 294.99758 * 11 10 9 13 13 N 1.46496 * 109.47215 * 54.99669 * 11 10 9 14 14 C 1.36936 * 119.99959 * 205.00054 * 13 11 10 15 15 H 1.08004 * 120.00232 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99936 * 180.02562 * 14 13 11 17 17 N 1.31622 * 119.99942 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00007 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47218 * 90.00110 * 18 16 14 20 20 H 1.48506 * 109.46789 * 210.00290 * 18 16 14 21 21 H 1.48496 * 109.47067 * 329.99967 * 18 16 14 22 22 C 1.50698 * 109.47304 * 175.00281 * 11 10 9 23 23 C 1.38239 * 119.99829 * 279.72213 * 22 11 10 24 24 C 1.38230 * 120.00026 * 179.78365 * 23 22 11 25 25 C 1.38232 * 120.00007 * 0.45111 * 24 23 22 26 26 C 1.38233 * 120.00304 * 359.80338 * 25 24 23 27 27 C 1.38234 * 120.00507 * 99.99420 * 22 11 10 28 28 C 1.54632 * 101.68643 * 25.76641 * 5 4 3 29 29 C 1.34418 * 124.35102 * 90.02261 * 3 2 1 30 30 O 1.21284 * 124.94001 * 0.38765 * 29 3 2 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 33 33 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 34 34 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 35 35 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 36 36 H 1.08996 * 110.24632 * 281.97687 * 4 3 2 37 37 H 1.08997 * 110.24748 * 43.98104 * 4 3 2 38 38 H 0.97001 * 119.99174 * 0.02562 * 9 7 5 39 39 H 1.09008 * 109.47267 * 300.00265 * 10 9 7 40 40 H 1.08998 * 109.47246 * 60.00085 * 10 9 7 41 41 H 0.96997 * 120.00170 * 25.00779 * 13 11 10 42 42 H 0.96995 * 120.00163 * 179.97438 * 17 16 14 43 43 H 1.08003 * 119.99768 * 359.97438 * 23 22 11 44 44 H 1.08001 * 120.00015 * 180.26916 * 24 23 22 45 45 H 1.08006 * 120.00173 * 179.83151 * 25 24 23 46 46 H 1.07998 * 120.00268 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.99784 * 359.97438 * 27 22 11 48 48 H 1.09003 * 110.48519 * 216.31235 * 28 5 4 49 49 H 1.08997 * 110.49114 * 93.65939 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3524 3.6347 -0.7485 6 1 1.3779 4.1135 -0.8442 7 6 3.4029 4.3990 -1.5124 8 8 3.9853 3.8710 -2.4361 9 7 3.6952 5.6692 -1.1694 10 6 4.7159 6.4122 -1.9123 11 6 4.8526 7.8180 -1.3242 12 1 3.9248 8.3686 -1.4797 13 7 5.1288 7.7221 0.1113 14 6 4.7960 8.7576 0.9433 15 1 4.3296 9.6449 0.5412 16 6 5.0583 8.6670 2.3034 17 7 4.7380 9.6621 3.1031 18 14 5.8644 7.1321 2.9989 19 1 7.3403 7.2952 2.9779 20 1 5.4092 6.9242 4.3971 21 1 5.4845 5.9567 2.1747 22 6 5.9856 8.5402 -2.0067 23 6 7.2912 8.2963 -1.6235 24 6 8.3307 8.9553 -2.2525 25 6 8.0642 9.8652 -3.2584 26 6 6.7584 10.1131 -3.6381 27 6 5.7190 9.4507 -3.0121 28 6 2.7506 3.4821 0.7378 29 6 2.2716 2.0962 1.1097 30 8 2.1354 1.6894 2.2442 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.2574 1.8614 -1.6382 37 1 1.5019 2.0234 -1.9417 38 1 3.2295 6.0913 -0.4305 39 1 5.6711 5.8925 -1.8363 40 1 4.4233 6.4831 -2.9599 41 1 5.5475 6.9252 0.4725 42 1 4.9209 9.5986 4.0536 43 1 7.4991 7.5885 -0.8346 44 1 9.3510 8.7615 -1.9561 45 1 8.8763 10.3822 -3.7481 46 1 6.5502 10.8237 -4.4243 47 1 4.6987 9.6442 -3.3088 48 1 2.2495 4.2350 1.3462 49 1 3.8321 3.5554 0.8526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732024590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:08 Heat of formation + Delta-G solvation = -29.950287 kcal Electronic energy + Delta-G solvation = -30269.369673 eV Core-core repulsion = 26196.535629 eV Total energy + Delta-G solvation = -4072.834043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.95472 -39.46986 -38.84603 -36.55232 -36.06286 -34.19602 -33.72378 -32.09541 -30.55492 -30.10623 -30.05885 -27.98541 -27.66810 -24.56179 -23.49146 -22.95448 -22.46481 -21.95384 -20.27946 -19.92210 -19.53630 -18.06313 -17.47751 -17.11827 -16.48475 -15.98836 -15.90997 -15.48569 -15.17645 -14.85782 -14.71986 -14.25347 -14.22593 -13.97944 -13.90757 -13.71685 -13.42240 -13.07655 -13.03310 -12.93062 -12.87606 -12.58751 -12.47512 -12.26331 -12.17517 -11.75833 -11.58864 -11.43779 -11.34679 -11.09318 -10.94939 -10.82288 -10.63340 -10.23862 -10.15886 -9.74298 -9.71200 -9.16597 -8.98735 -8.91586 -8.50839 -8.30675 -7.49113 -5.89762 -3.29200 1.75755 1.82110 2.42960 2.56640 2.70771 3.22786 3.25870 3.30685 3.39500 4.03634 4.16434 4.20094 4.46235 4.59971 4.65456 4.78102 4.89121 4.97310 5.02036 5.07767 5.22534 5.24005 5.28493 5.31200 5.37084 5.38555 5.44520 5.47943 5.53017 5.60544 5.63720 5.64991 5.69789 5.86858 5.89960 5.95985 6.01099 6.24714 6.31810 6.35982 6.48865 6.54300 6.84134 6.88489 6.89228 7.12798 7.41241 7.58794 7.82665 8.00214 8.21459 8.27577 9.03171 9.74816 9.91567 11.27752 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.003212 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.019089 B = 8714.295722 C =10607.147564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.120 3.880 5 C -0.123 4.123 6 H 0.120 0.880 7 C 0.524 3.476 8 O -0.545 6.545 9 N -0.711 5.711 10 C 0.117 3.883 11 C 0.204 3.796 12 H 0.075 0.925 13 N -0.739 5.739 14 C -0.251 4.251 15 H 0.092 0.908 16 C 0.015 3.985 17 N -0.926 5.926 18 Si 0.878 3.122 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.081 4.081 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.116 4.116 28 C -0.149 4.149 29 C 0.521 3.479 30 O -0.529 6.529 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.413 0.587 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -12.164 -13.267 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.003 4.003 5 C -0.145 4.145 6 H 0.138 0.862 7 C 0.308 3.692 8 O -0.423 6.423 9 N -0.363 5.363 10 C -0.007 4.007 11 C 0.094 3.906 12 H 0.093 0.907 13 N -0.381 5.381 14 C -0.380 4.380 15 H 0.110 0.890 16 C -0.182 4.182 17 N -0.573 5.573 18 Si 0.708 3.292 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.085 4.085 23 C -0.106 4.106 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.135 4.135 28 C -0.189 4.189 29 C 0.309 3.691 30 O -0.405 6.405 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.056 -12.605 -13.176 18.681 hybrid contribution 0.536 -0.526 1.011 1.259 sum -3.520 -13.132 -12.166 18.244 Atomic orbital electron populations 1.22163 0.95705 1.02337 1.02573 1.21338 0.94387 0.81041 1.03220 1.48378 1.66023 1.14024 1.07265 1.21982 1.03264 0.88196 0.86843 1.22268 1.00497 0.96436 0.95305 0.86194 1.20004 0.83258 0.81983 0.83934 1.90701 1.52751 1.68676 1.30182 1.45982 1.40832 1.13153 1.36301 1.21677 0.91368 0.92174 0.95525 1.19432 0.94894 0.91831 0.84447 0.90738 1.42816 1.74148 1.19597 1.01541 1.18992 1.34349 0.96253 0.88400 0.89022 1.24637 1.00524 0.97049 0.95990 1.69683 1.52268 1.31208 1.04112 0.86693 0.79872 0.83756 0.78924 1.21064 1.21543 1.20236 1.20832 0.95927 0.97026 0.94711 1.20912 0.92206 0.99339 0.98132 1.21089 0.98858 0.97561 0.96966 1.20999 0.96493 0.99068 0.98420 1.21010 0.93014 1.00144 1.00362 1.21004 0.98806 0.97046 0.96621 1.22407 1.04796 0.96644 0.95101 1.20792 0.76322 0.87578 0.84397 1.90735 1.53233 1.75434 1.21070 0.91419 0.92150 0.92342 0.89990 0.90233 0.89104 0.89809 0.75075 0.91469 0.90869 0.80324 0.92852 0.86479 0.86813 0.86953 0.86814 0.86539 0.86618 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.12 1.05 6.65 -4.04 -0.03 1.02 16 3 N -0.62 -6.59 2.93 -172.29 -0.51 -7.10 16 4 C 0.12 1.13 6.65 -3.02 -0.02 1.11 16 5 C -0.12 -1.22 3.56 -90.04 -0.32 -1.54 16 6 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 7 C 0.52 6.64 7.07 -10.98 -0.08 6.56 16 8 O -0.54 -8.42 15.57 5.55 0.09 -8.33 16 9 N -0.71 -9.33 5.34 -60.30 -0.32 -9.65 16 10 C 0.12 1.65 5.21 -4.05 -0.02 1.63 16 11 C 0.20 3.34 2.65 -69.09 -0.18 3.15 16 12 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 13 N -0.74 -14.81 3.59 -54.55 -0.20 -15.01 16 14 C -0.25 -6.29 10.40 -15.06 -0.16 -6.45 16 15 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.01 0.40 5.50 -17.43 -0.10 0.30 16 17 N -0.93 -27.50 13.97 55.49 0.78 -26.72 16 18 Si 0.88 20.68 27.74 -169.99 -4.71 15.96 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -5.93 6.52 56.52 0.37 -5.56 16 22 C -0.08 -1.34 4.92 -104.62 -0.52 -1.86 16 23 C -0.09 -1.47 9.33 -39.58 -0.37 -1.84 16 24 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 25 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 26 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 27 C -0.12 -1.73 9.67 -39.58 -0.38 -2.11 16 28 C -0.15 -1.74 6.37 -26.74 -0.17 -1.91 16 29 C 0.52 7.01 8.02 -10.86 -0.09 6.92 16 30 O -0.53 -9.15 17.59 5.55 0.10 -9.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.79 7.92 -51.93 -0.41 0.37 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.96 7.07 -51.93 -0.37 0.59 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 5.40 8.14 -40.82 -0.33 5.07 16 39 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.36 7.32 5.66 -40.82 -0.23 7.09 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.12 2.03 7.71 -52.48 -0.40 1.62 16 44 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.12 1.51 8.04 -52.49 -0.42 1.08 16 48 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.11 1.39 7.89 -51.93 -0.41 0.98 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -32.94 408.03 -9.52 -42.47 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.65 Total: 13.85 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.24 Total: -2.57 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.25 Total: -58.47 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.18 Total: -17.38 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.94 -9.52 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732024590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.517 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds