Wall clock time and date at job start Wed Apr 1 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46766 * 124.34698 * 269.72897 * 3 2 1 5 5 C 1.54663 * 105.37994 * 162.85173 * 4 3 2 6 6 H 1.08999 * 111.22682 * 267.57472 * 5 4 3 7 7 C 1.50703 * 110.82312 * 143.77061 * 5 4 3 8 8 O 1.21292 * 119.99476 * 6.35343 * 7 5 4 9 9 N 1.34775 * 120.00529 * 186.34780 * 7 5 4 10 10 C 1.46491 * 120.00206 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47166 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46822 * 294.99758 * 11 10 9 13 13 N 1.46496 * 109.47215 * 54.99669 * 11 10 9 14 14 C 1.36936 * 119.99959 * 205.00054 * 13 11 10 15 15 H 1.08004 * 120.00232 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99936 * 180.02562 * 14 13 11 17 17 N 1.31622 * 119.99942 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00007 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47218 * 90.00110 * 18 16 14 20 20 H 1.48506 * 109.46789 * 210.00290 * 18 16 14 21 21 H 1.48496 * 109.47067 * 329.99967 * 18 16 14 22 22 C 1.50698 * 109.47304 * 175.00281 * 11 10 9 23 23 C 1.38239 * 119.99829 * 279.72213 * 22 11 10 24 24 C 1.38230 * 120.00026 * 179.78365 * 23 22 11 25 25 C 1.38232 * 120.00007 * 0.45111 * 24 23 22 26 26 C 1.38233 * 120.00304 * 359.80338 * 25 24 23 27 27 C 1.38234 * 120.00507 * 99.99420 * 22 11 10 28 28 C 1.54632 * 101.68643 * 25.76641 * 5 4 3 29 29 C 1.34418 * 124.35102 * 90.02261 * 3 2 1 30 30 O 1.21284 * 124.94001 * 0.38765 * 29 3 2 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 33 33 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 34 34 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 35 35 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 36 36 H 1.08996 * 110.24632 * 281.97687 * 4 3 2 37 37 H 1.08997 * 110.24748 * 43.98104 * 4 3 2 38 38 H 0.97001 * 119.99174 * 0.02562 * 9 7 5 39 39 H 1.09008 * 109.47267 * 300.00265 * 10 9 7 40 40 H 1.08998 * 109.47246 * 60.00085 * 10 9 7 41 41 H 0.96997 * 120.00170 * 25.00779 * 13 11 10 42 42 H 0.96995 * 120.00163 * 179.97438 * 17 16 14 43 43 H 1.08003 * 119.99768 * 359.97438 * 23 22 11 44 44 H 1.08001 * 120.00015 * 180.26916 * 24 23 22 45 45 H 1.08006 * 120.00173 * 179.83151 * 25 24 23 46 46 H 1.07998 * 120.00268 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.99784 * 359.97438 * 27 22 11 48 48 H 1.09003 * 110.48519 * 216.31235 * 28 5 4 49 49 H 1.08997 * 110.49114 * 93.65939 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3524 3.6347 -0.7485 6 1 1.3779 4.1135 -0.8442 7 6 3.4029 4.3990 -1.5124 8 8 3.9853 3.8710 -2.4361 9 7 3.6952 5.6692 -1.1694 10 6 4.7159 6.4122 -1.9123 11 6 4.8526 7.8180 -1.3242 12 1 3.9248 8.3686 -1.4797 13 7 5.1288 7.7221 0.1113 14 6 4.7960 8.7576 0.9433 15 1 4.3296 9.6449 0.5412 16 6 5.0583 8.6670 2.3034 17 7 4.7380 9.6621 3.1031 18 14 5.8644 7.1321 2.9989 19 1 7.3403 7.2952 2.9779 20 1 5.4092 6.9242 4.3971 21 1 5.4845 5.9567 2.1747 22 6 5.9856 8.5402 -2.0067 23 6 7.2912 8.2963 -1.6235 24 6 8.3307 8.9553 -2.2525 25 6 8.0642 9.8652 -3.2584 26 6 6.7584 10.1131 -3.6381 27 6 5.7190 9.4507 -3.0121 28 6 2.7506 3.4821 0.7378 29 6 2.2716 2.0962 1.1097 30 8 2.1354 1.6894 2.2442 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.2574 1.8614 -1.6382 37 1 1.5019 2.0234 -1.9417 38 1 3.2295 6.0913 -0.4305 39 1 5.6711 5.8925 -1.8363 40 1 4.4233 6.4831 -2.9599 41 1 5.5475 6.9252 0.4725 42 1 4.9209 9.5986 4.0536 43 1 7.4991 7.5885 -0.8346 44 1 9.3510 8.7615 -1.9561 45 1 8.8763 10.3822 -3.7481 46 1 6.5502 10.8237 -4.4243 47 1 4.6987 9.6442 -3.3088 48 1 2.2495 4.2350 1.3462 49 1 3.8321 3.5554 0.8526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732024590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:06 Heat of formation + Delta-G solvation = -51.007095 kcal Electronic energy + Delta-G solvation = -30270.282764 eV Core-core repulsion = 26196.535629 eV Total energy + Delta-G solvation = -4073.747135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.91536 -40.60078 -39.98505 -37.69383 -37.30719 -35.29780 -34.89313 -33.70757 -31.86415 -31.51427 -30.90920 -29.08175 -28.70249 -25.78918 -24.75901 -24.11244 -23.50209 -23.13591 -21.49492 -21.04193 -20.45992 -19.82744 -18.53000 -18.04235 -17.69145 -17.05016 -16.99694 -16.81023 -16.25027 -16.13708 -15.86903 -15.76022 -15.15435 -15.06690 -14.96086 -14.72875 -14.60801 -14.40547 -14.20499 -14.14309 -14.05630 -13.83277 -13.50151 -13.34462 -13.05306 -12.90292 -12.85897 -12.56779 -12.44323 -12.41784 -12.14835 -12.04768 -12.00204 -11.77563 -11.67954 -11.23699 -11.03722 -10.79134 -10.08204 -9.80966 -9.67302 -9.58291 -9.28727 -7.99214 -5.33496 0.58914 0.65177 1.37149 1.39468 1.40716 1.47541 1.54756 1.85679 2.22640 2.48434 3.01156 3.14515 3.29745 3.34799 3.51260 3.73806 3.83162 3.99151 4.08278 4.13263 4.14792 4.22422 4.23167 4.35255 4.37210 4.40991 4.46282 4.52944 4.55813 4.70625 4.73594 4.79373 4.81809 4.84052 4.91084 4.93890 5.02753 5.22514 5.26692 5.30403 5.43175 5.52853 5.70549 5.73224 5.79781 5.90369 5.98193 6.24028 6.27015 6.53024 7.01818 7.08867 7.17536 7.81449 8.00320 9.21951 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.003212 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.019089 B = 8714.295722 C =10607.147564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.122 3.878 5 C -0.111 4.111 6 H 0.150 0.850 7 C 0.528 3.472 8 O -0.570 6.570 9 N -0.712 5.712 10 C 0.129 3.871 11 C 0.208 3.792 12 H 0.075 0.925 13 N -0.736 5.736 14 C -0.213 4.213 15 H 0.062 0.938 16 C -0.049 4.049 17 N -0.980 5.980 18 Si 0.935 3.065 19 H -0.290 1.290 20 H -0.304 1.304 21 H -0.245 1.245 22 C -0.101 4.101 23 C -0.113 4.113 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.148 4.148 29 C 0.513 3.487 30 O -0.577 6.577 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.365 0.635 42 H 0.255 0.745 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.134 0.866 48 H 0.120 0.880 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 -13.128 -16.226 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.347 5.347 4 C 0.000 4.000 5 C -0.132 4.132 6 H 0.168 0.832 7 C 0.314 3.686 8 O -0.450 6.450 9 N -0.363 5.363 10 C 0.004 3.996 11 C 0.099 3.901 12 H 0.093 0.907 13 N -0.379 5.379 14 C -0.344 4.344 15 H 0.080 0.920 16 C -0.241 4.241 17 N -0.631 5.631 18 Si 0.764 3.236 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.169 1.169 22 C -0.105 4.105 23 C -0.132 4.132 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.189 4.189 29 C 0.302 3.698 30 O -0.457 6.457 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.199 0.801 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.152 0.848 48 H 0.138 0.862 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.324 -13.614 -16.242 21.630 hybrid contribution 0.645 -0.172 1.732 1.856 sum -3.680 -13.787 -14.510 20.351 Atomic orbital electron populations 1.22106 0.94600 1.03414 1.01954 1.21572 0.95288 0.80003 1.03847 1.48509 1.64591 1.14668 1.06902 1.22082 1.03986 0.87369 0.86589 1.22267 1.00785 0.96762 0.93377 0.83211 1.20342 0.83156 0.81550 0.83538 1.90698 1.53735 1.69088 1.31502 1.45987 1.40574 1.13475 1.36241 1.21492 0.91407 0.90588 0.96088 1.19526 0.94906 0.93400 0.82218 0.90683 1.42709 1.74007 1.18289 1.02871 1.18881 1.31087 0.95896 0.88564 0.91978 1.25239 1.02502 0.99752 0.96620 1.69844 1.55409 1.33752 1.04056 0.85734 0.78326 0.81847 0.77730 1.21682 1.23172 1.16872 1.20794 0.95566 0.98101 0.95998 1.20980 0.93132 1.00287 0.98791 1.21359 0.99260 0.97653 0.97234 1.21395 0.97607 0.98309 0.97685 1.21413 0.92659 0.99940 1.00506 1.21282 1.00266 0.96551 0.96292 1.22377 1.04136 0.95942 0.96417 1.21080 0.76057 0.88398 0.84296 1.90704 1.55577 1.76477 1.22975 0.89586 0.94482 0.91096 0.91506 0.87482 0.89989 0.86821 0.74929 0.92348 0.89520 0.80124 0.93601 0.87848 0.85278 0.84047 0.83813 0.84821 0.86159 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.24 71.98 0.74 -1.38 16 2 C 0.11 1.75 6.65 86.38 0.57 2.33 16 3 N -0.61 -11.97 2.93 -817.60 -2.40 -14.37 16 4 C 0.12 1.95 6.65 86.90 0.58 2.53 16 5 C -0.11 -1.91 3.56 -10.42 -0.04 -1.95 16 6 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 7 C 0.53 12.25 7.07 87.66 0.62 12.87 16 8 O -0.57 -16.46 15.57 -3.07 -0.05 -16.51 16 9 N -0.71 -17.38 5.34 -463.06 -2.47 -19.85 16 10 C 0.13 3.45 5.21 86.38 0.45 3.90 16 11 C 0.21 6.60 2.65 44.25 0.12 6.72 16 12 H 0.08 2.38 7.94 -2.39 -0.02 2.37 16 13 N -0.74 -29.15 3.59 -326.51 -1.17 -30.32 16 14 C -0.21 -10.82 10.40 84.03 0.87 -9.95 16 15 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 16 C -0.05 -2.70 5.50 84.86 0.47 -2.24 16 17 N -0.98 -60.07 13.97 21.65 0.30 -59.77 16 18 Si 0.93 43.34 27.74 68.60 1.90 45.24 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 21 H -0.24 -9.87 6.52 99.48 0.65 -9.22 16 22 C -0.10 -3.25 4.92 -19.87 -0.10 -3.34 16 23 C -0.11 -3.76 9.33 22.27 0.21 -3.55 16 24 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 25 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 27 C -0.13 -3.48 9.67 22.27 0.22 -3.27 16 28 C -0.15 -3.28 6.37 30.59 0.19 -3.08 16 29 C 0.51 13.52 8.02 87.90 0.71 14.23 16 30 O -0.58 -20.35 17.59 -3.04 -0.05 -20.40 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 1.25 7.92 -2.39 -0.02 1.23 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.53 7.07 -2.39 -0.02 1.52 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.41 10.10 8.14 -92.71 -0.75 9.35 16 39 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.37 14.34 5.66 -92.71 -0.52 13.81 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.10 3.61 7.71 -2.91 -0.02 3.58 16 44 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 45 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 46 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.13 3.14 8.04 -2.91 -0.02 3.12 16 48 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.10 2.44 7.89 -2.39 -0.02 2.42 16 Total: -1.00 -73.91 408.03 1.96 -71.95 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.38 Total: 39.89 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.28 Total: 4.14 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.74 Total: -124.30 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.10 Total: -36.92 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal Total: -73.91 1.96 -71.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732024590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.942 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds