Wall clock time and date at job start Wed Apr 1 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47332 * 2 1 4 4 C 1.46763 * 124.34357 * 269.95185 * 3 2 1 5 5 C 1.54487 * 105.47213 * 163.00416 * 4 3 2 6 6 H 1.09005 * 110.99560 * 267.27974 * 5 4 3 7 7 C 1.50695 * 110.97267 * 143.53358 * 5 4 3 8 8 O 1.21285 * 120.00087 * 6.15951 * 7 5 4 9 9 N 1.34776 * 120.00245 * 186.17076 * 7 5 4 10 10 C 1.46496 * 120.00006 * 179.97438 * 9 7 5 11 11 C 1.50706 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.38236 * 119.99994 * 269.73095 * 11 10 9 13 13 C 1.38241 * 119.99708 * 179.78922 * 12 11 10 14 14 C 1.38235 * 119.99967 * 0.45656 * 13 12 11 15 15 C 1.50696 * 119.99933 * 179.79513 * 14 13 12 16 16 N 1.46506 * 109.46825 * 269.97602 * 15 14 13 17 17 C 1.36935 * 119.99777 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99875 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00201 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99882 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47255 * 89.99942 * 21 19 17 23 23 H 1.48499 * 109.47091 * 209.99872 * 21 19 17 24 24 H 1.48495 * 109.46994 * 329.99306 * 21 19 17 25 25 C 1.38242 * 120.00151 * 359.77262 * 14 13 12 26 26 C 1.38235 * 119.99709 * 0.02562 * 25 14 13 27 27 C 1.54627 * 101.76233 * 25.40900 * 5 4 3 28 28 C 1.34419 * 124.35220 * 89.96834 * 3 2 1 29 29 O 1.21273 * 124.93912 * 0.42744 * 28 3 2 30 30 H 1.08997 * 109.47764 * 300.00601 * 1 2 3 31 31 H 1.09003 * 109.47102 * 60.00757 * 1 2 3 32 32 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47764 * 239.99399 * 2 1 3 34 34 H 1.09003 * 109.47102 * 119.99243 * 2 1 3 35 35 H 1.08996 * 110.24970 * 44.00237 * 4 3 2 36 36 H 1.09003 * 110.24601 * 281.99716 * 4 3 2 37 37 H 0.96998 * 119.99803 * 359.97438 * 9 7 5 38 38 H 1.09001 * 109.47001 * 59.99676 * 10 9 7 39 39 H 1.09000 * 109.47574 * 299.99892 * 10 9 7 40 40 H 1.07997 * 120.00153 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.99951 * 180.25181 * 13 12 11 42 42 H 1.08990 * 109.47148 * 29.97726 * 15 14 13 43 43 H 1.09002 * 109.47296 * 149.97964 * 15 14 13 44 44 H 0.96997 * 119.99854 * 0.02562 * 16 15 14 45 45 H 0.97001 * 119.99927 * 180.02562 * 20 19 17 46 46 H 1.07996 * 120.00380 * 179.97438 * 25 14 13 47 47 H 1.08001 * 120.00272 * 179.97438 * 26 25 14 48 48 H 1.09006 * 110.48243 * 93.88498 * 27 5 4 49 49 H 1.09001 * 110.48625 * 216.52360 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2953 2.1615 -1.2118 5 6 2.3541 3.6343 -0.7491 6 1 1.3797 4.1133 -0.8460 7 6 3.4055 4.3978 -1.5123 8 8 3.9888 3.8693 -2.4350 9 7 3.6979 5.6680 -1.1694 10 6 4.7204 6.4101 -1.9110 11 6 4.8539 7.7955 -1.3330 12 6 4.0816 8.8289 -1.8294 13 6 4.2010 10.0987 -1.2963 14 6 5.0995 10.3371 -0.2731 15 6 5.2329 11.7224 0.3050 16 7 6.2563 12.4641 -0.4359 17 6 6.5527 13.7550 -0.0880 18 1 6.0324 14.2260 0.7328 19 6 7.5219 14.4580 -0.7903 20 7 8.1563 13.8837 -1.7903 21 14 7.9268 16.2186 -0.3152 22 1 9.0132 16.2208 0.6972 23 1 8.3703 16.9666 -1.5189 24 1 6.7186 16.8681 0.2537 25 6 5.8752 9.3046 0.2201 26 6 5.7528 8.0339 -0.3102 27 6 2.7505 3.4821 0.7377 28 6 2.2706 2.0965 1.1097 29 8 2.1341 1.6900 2.2441 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.4947 2.0262 -1.9388 36 1 3.2512 1.8630 -1.6423 37 1 3.2313 6.0908 -0.4316 38 1 4.4297 6.4805 -2.9591 39 1 5.6751 5.8899 -1.8330 40 1 3.3829 8.6436 -2.6318 41 1 3.5948 10.9053 -1.6813 42 1 4.2785 12.2425 0.2259 43 1 5.5227 11.6522 1.3534 44 1 6.7233 12.0411 -1.1734 45 1 8.8339 14.3749 -2.2809 46 1 6.5775 9.4909 1.0192 47 1 6.3591 7.2273 0.0748 48 1 3.8319 3.5552 0.8535 49 1 2.2491 4.2354 1.3452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732316244.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:53 Heat of formation + Delta-G solvation = -37.228145 kcal Electronic energy + Delta-G solvation = -28508.912039 eV Core-core repulsion = 24435.762404 eV Total energy + Delta-G solvation = -4073.149635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30046 -39.86078 -39.10281 -36.78125 -35.64906 -34.54981 -34.30120 -32.16764 -30.77881 -30.61610 -29.89985 -28.23408 -27.15866 -24.88889 -23.95243 -23.15361 -22.55279 -22.34123 -20.70199 -20.43102 -19.83519 -18.09256 -17.46167 -17.31618 -16.49086 -16.38826 -15.80258 -15.75876 -15.26340 -15.08569 -14.77107 -14.57896 -14.52118 -14.23096 -14.09279 -13.73837 -13.59993 -13.41436 -13.27511 -13.21267 -12.86933 -12.80111 -12.47988 -12.37106 -12.13542 -12.04595 -11.90171 -11.89696 -11.57822 -11.11869 -10.90127 -10.78175 -10.65476 -10.51862 -10.11285 -10.09672 -9.81045 -9.43953 -9.21117 -8.93998 -8.74974 -8.50397 -6.98396 -5.80184 -3.10328 1.31984 1.58145 2.10850 2.18189 2.42893 2.88226 3.41261 3.46256 3.48136 3.68658 3.79303 3.94606 4.23473 4.34000 4.51253 4.57036 4.58753 4.66349 4.68746 4.87159 4.88326 4.96647 5.03427 5.12430 5.16430 5.21788 5.25762 5.32437 5.36435 5.37422 5.50211 5.53041 5.66430 5.68457 5.78976 6.02297 6.03963 6.09936 6.11021 6.15275 6.43609 6.54006 6.57044 6.61054 6.62555 7.04958 7.09480 7.16478 7.65426 7.69813 7.78109 8.37408 9.49146 10.04645 10.40330 11.42196 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030620 B = 0.001535 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.222019 B =18241.368607 C =18668.594748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.124 4.124 6 H 0.120 0.880 7 C 0.525 3.475 8 O -0.535 6.535 9 N -0.718 5.718 10 C 0.165 3.835 11 C -0.127 4.127 12 C -0.103 4.103 13 C -0.106 4.106 14 C -0.062 4.062 15 C 0.183 3.817 16 N -0.726 5.726 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.106 4.106 26 C -0.103 4.103 27 C -0.147 4.147 28 C 0.520 3.480 29 O -0.528 6.528 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.404 0.596 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.111 0.889 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 -26.807 0.899 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.138 0.862 7 C 0.310 3.690 8 O -0.412 6.412 9 N -0.370 5.370 10 C 0.043 3.957 11 C -0.128 4.128 12 C -0.122 4.122 13 C -0.125 4.125 14 C -0.063 4.063 15 C 0.057 3.943 16 N -0.371 5.371 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.187 4.187 28 C 0.307 3.693 29 O -0.404 6.404 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.142 0.858 47 H 0.137 0.863 48 H 0.129 0.871 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.352 -27.315 0.896 31.346 hybrid contribution 0.244 1.231 0.161 1.265 sum -15.107 -26.084 1.056 30.161 Atomic orbital electron populations 1.22162 0.95590 1.02530 1.02531 1.21369 0.94456 0.80811 1.03402 1.48376 1.65859 1.14081 1.07156 1.21967 1.03556 0.87988 0.87000 1.22249 1.00357 0.96711 0.95290 0.86165 1.20052 0.83213 0.81810 0.83969 1.90743 1.52230 1.68433 1.29783 1.46122 1.41102 1.13278 1.36461 1.20201 0.91694 0.88312 0.95489 1.19649 0.99699 0.94376 0.99043 1.20986 0.98958 0.92696 0.99516 1.21132 0.98781 0.96509 0.96080 1.20407 0.94271 0.96453 0.95172 1.19715 0.93506 0.86433 0.94694 1.42331 1.43552 1.12488 1.38726 1.19240 1.16578 0.89010 1.12678 0.91047 1.24760 0.99204 0.98557 0.98252 1.69673 1.28330 1.36869 1.23041 0.86171 0.78145 0.84464 0.77277 1.21651 1.21720 1.20705 1.21137 0.98747 0.92205 1.00378 1.20992 0.97962 0.97054 0.96135 1.22375 1.04586 0.96835 0.94905 1.20739 0.76537 0.87534 0.84460 1.90747 1.53261 1.75393 1.21036 0.92178 0.92326 0.91270 0.90088 0.89862 0.89636 0.88985 0.76095 0.90521 0.90540 0.86311 0.85786 0.95372 0.95362 0.78055 0.93436 0.85772 0.86300 0.87123 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.12 0.69 6.65 -4.04 -0.03 0.66 16 3 N -0.62 -4.32 2.93 -172.41 -0.51 -4.82 16 4 C 0.12 0.67 6.66 -3.12 -0.02 0.65 16 5 C -0.12 -0.64 3.54 -90.14 -0.32 -0.96 16 6 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 7 C 0.52 4.12 7.07 -10.99 -0.08 4.04 16 8 O -0.54 -6.19 15.57 5.55 0.09 -6.10 16 9 N -0.72 -5.17 5.50 -61.47 -0.34 -5.51 16 10 C 0.17 1.53 5.80 -5.19 -0.03 1.50 16 11 C -0.13 -1.39 5.25 -104.62 -0.55 -1.94 16 12 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 13 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 14 C -0.06 -1.02 5.25 -104.62 -0.55 -1.57 16 15 C 0.18 3.61 6.38 -5.19 -0.03 3.58 16 16 N -0.73 -18.24 5.59 -61.09 -0.34 -18.58 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.11 -1.54 9.70 -39.58 -0.38 -1.93 16 26 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 27 C -0.15 -0.85 6.37 -26.75 -0.17 -1.02 16 28 C 0.52 4.67 8.02 -10.86 -0.09 4.58 16 29 O -0.53 -6.87 17.59 5.56 0.10 -6.77 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.65 7.06 -51.93 -0.37 0.28 16 37 H 0.40 2.21 8.46 -40.82 -0.35 1.86 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.39 10.35 7.66 -40.82 -0.31 10.03 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 46 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.11 0.65 7.89 -51.93 -0.41 0.24 16 49 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 413.36 15.07 6.23 6.23 Total: -1.00 -34.86 413.36 -10.06 -44.92 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.72 Total: 6.17 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.27 Total: -5.34 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.46 Total: -56.23 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.18 Total: -12.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.86 -10.06 -44.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732316244.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.692 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds