Wall clock time and date at job start Wed Apr 1 2020 02:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47332 * 2 1 4 4 C 1.46763 * 124.34357 * 269.95185 * 3 2 1 5 5 C 1.54487 * 105.47213 * 163.00416 * 4 3 2 6 6 H 1.09005 * 110.99560 * 267.27974 * 5 4 3 7 7 C 1.50695 * 110.97267 * 143.53358 * 5 4 3 8 8 O 1.21285 * 120.00087 * 6.15951 * 7 5 4 9 9 N 1.34776 * 120.00245 * 186.17076 * 7 5 4 10 10 C 1.46496 * 120.00006 * 179.97438 * 9 7 5 11 11 C 1.50706 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.38236 * 119.99994 * 269.73095 * 11 10 9 13 13 C 1.38241 * 119.99708 * 179.78922 * 12 11 10 14 14 C 1.38235 * 119.99967 * 0.45656 * 13 12 11 15 15 C 1.50696 * 119.99933 * 179.79513 * 14 13 12 16 16 N 1.46506 * 109.46825 * 269.97602 * 15 14 13 17 17 C 1.36935 * 119.99777 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99875 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00201 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99882 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47255 * 89.99942 * 21 19 17 23 23 H 1.48499 * 109.47091 * 209.99872 * 21 19 17 24 24 H 1.48495 * 109.46994 * 329.99306 * 21 19 17 25 25 C 1.38242 * 120.00151 * 359.77262 * 14 13 12 26 26 C 1.38235 * 119.99709 * 0.02562 * 25 14 13 27 27 C 1.54627 * 101.76233 * 25.40900 * 5 4 3 28 28 C 1.34419 * 124.35220 * 89.96834 * 3 2 1 29 29 O 1.21273 * 124.93912 * 0.42744 * 28 3 2 30 30 H 1.08997 * 109.47764 * 300.00601 * 1 2 3 31 31 H 1.09003 * 109.47102 * 60.00757 * 1 2 3 32 32 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47764 * 239.99399 * 2 1 3 34 34 H 1.09003 * 109.47102 * 119.99243 * 2 1 3 35 35 H 1.08996 * 110.24970 * 44.00237 * 4 3 2 36 36 H 1.09003 * 110.24601 * 281.99716 * 4 3 2 37 37 H 0.96998 * 119.99803 * 359.97438 * 9 7 5 38 38 H 1.09001 * 109.47001 * 59.99676 * 10 9 7 39 39 H 1.09000 * 109.47574 * 299.99892 * 10 9 7 40 40 H 1.07997 * 120.00153 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.99951 * 180.25181 * 13 12 11 42 42 H 1.08990 * 109.47148 * 29.97726 * 15 14 13 43 43 H 1.09002 * 109.47296 * 149.97964 * 15 14 13 44 44 H 0.96997 * 119.99854 * 0.02562 * 16 15 14 45 45 H 0.97001 * 119.99927 * 180.02562 * 20 19 17 46 46 H 1.07996 * 120.00380 * 179.97438 * 25 14 13 47 47 H 1.08001 * 120.00272 * 179.97438 * 26 25 14 48 48 H 1.09006 * 110.48243 * 93.88498 * 27 5 4 49 49 H 1.09001 * 110.48625 * 216.52360 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2953 2.1615 -1.2118 5 6 2.3541 3.6343 -0.7491 6 1 1.3797 4.1133 -0.8460 7 6 3.4055 4.3978 -1.5123 8 8 3.9888 3.8693 -2.4350 9 7 3.6979 5.6680 -1.1694 10 6 4.7204 6.4101 -1.9110 11 6 4.8539 7.7955 -1.3330 12 6 4.0816 8.8289 -1.8294 13 6 4.2010 10.0987 -1.2963 14 6 5.0995 10.3371 -0.2731 15 6 5.2329 11.7224 0.3050 16 7 6.2563 12.4641 -0.4359 17 6 6.5527 13.7550 -0.0880 18 1 6.0324 14.2260 0.7328 19 6 7.5219 14.4580 -0.7903 20 7 8.1563 13.8837 -1.7903 21 14 7.9268 16.2186 -0.3152 22 1 9.0132 16.2208 0.6972 23 1 8.3703 16.9666 -1.5189 24 1 6.7186 16.8681 0.2537 25 6 5.8752 9.3046 0.2201 26 6 5.7528 8.0339 -0.3102 27 6 2.7505 3.4821 0.7377 28 6 2.2706 2.0965 1.1097 29 8 2.1341 1.6900 2.2441 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.4947 2.0262 -1.9388 36 1 3.2512 1.8630 -1.6423 37 1 3.2313 6.0908 -0.4316 38 1 4.4297 6.4805 -2.9591 39 1 5.6751 5.8899 -1.8330 40 1 3.3829 8.6436 -2.6318 41 1 3.5948 10.9053 -1.6813 42 1 4.2785 12.2425 0.2259 43 1 5.5227 11.6522 1.3534 44 1 6.7233 12.0411 -1.1734 45 1 8.8339 14.3749 -2.2809 46 1 6.5775 9.4909 1.0192 47 1 6.3591 7.2273 0.0748 48 1 3.8319 3.5552 0.8535 49 1 2.2491 4.2354 1.3452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732316244.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:52 Heat of formation + Delta-G solvation = -60.286007 kcal Electronic energy + Delta-G solvation = -28509.911902 eV Core-core repulsion = 24435.762404 eV Total energy + Delta-G solvation = -4074.149499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89590 -40.68917 -40.02069 -37.49319 -36.90277 -35.75818 -34.92599 -33.69177 -31.88632 -31.81804 -30.70230 -28.79970 -28.36013 -26.18897 -24.81352 -24.06750 -23.59678 -23.51451 -21.66755 -21.20057 -20.42179 -19.32617 -18.67339 -18.03926 -17.27756 -17.04379 -16.82390 -16.65945 -16.45564 -16.12464 -15.90624 -15.69501 -15.24383 -15.05230 -14.97715 -14.72013 -14.69977 -14.37863 -14.30990 -14.14849 -13.88260 -13.67323 -13.31657 -13.30626 -13.06962 -12.98940 -12.85747 -12.76543 -12.50952 -12.39897 -12.18370 -12.02189 -11.94543 -11.87805 -11.71707 -11.22238 -10.98482 -10.81377 -10.11717 -9.78939 -9.78134 -9.60701 -9.03220 -7.95986 -5.26204 0.27470 0.53832 1.46533 1.47916 1.49614 1.56267 1.58193 1.89121 2.23829 2.55610 2.89801 3.18650 3.33378 3.37408 3.68383 3.78382 3.88660 3.93577 4.06800 4.10312 4.16680 4.19958 4.24613 4.25173 4.33229 4.47412 4.56230 4.59420 4.60398 4.72808 4.73314 4.78290 4.83317 4.91328 4.92414 4.93894 4.94768 5.10816 5.22893 5.26720 5.37403 5.47512 5.49501 5.53868 5.62958 5.84456 6.04554 6.09733 6.24837 6.52211 7.06499 7.19268 7.31676 8.04814 8.29769 9.27213 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030620 B = 0.001535 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.222019 B =18241.368607 C =18668.594748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.616 5.616 4 C 0.117 3.883 5 C -0.110 4.110 6 H 0.150 0.850 7 C 0.529 3.471 8 O -0.572 6.572 9 N -0.709 5.709 10 C 0.171 3.829 11 C -0.109 4.109 12 C -0.096 4.096 13 C -0.117 4.117 14 C -0.088 4.088 15 C 0.184 3.816 16 N -0.739 5.739 17 C -0.250 4.250 18 H 0.078 0.922 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.976 3.024 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.268 1.268 25 C -0.118 4.118 26 C -0.098 4.098 27 C -0.139 4.139 28 C 0.509 3.491 29 O -0.578 6.578 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.119 0.881 47 H 0.142 0.858 48 H 0.111 0.889 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.098 -27.641 0.423 32.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.349 5.349 4 C -0.005 4.005 5 C -0.131 4.131 6 H 0.168 0.832 7 C 0.316 3.684 8 O -0.451 6.451 9 N -0.361 5.361 10 C 0.048 3.952 11 C -0.109 4.109 12 C -0.115 4.115 13 C -0.136 4.136 14 C -0.088 4.088 15 C 0.059 3.941 16 N -0.382 5.382 17 C -0.381 4.381 18 H 0.096 0.904 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.193 1.193 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.179 4.179 28 C 0.298 3.702 29 O -0.459 6.459 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.253 0.747 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.160 0.840 48 H 0.129 0.871 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.811 -28.151 0.441 32.792 hybrid contribution 0.632 1.344 0.292 1.513 sum -16.180 -26.807 0.733 31.320 Atomic orbital electron populations 1.22098 0.94748 1.03300 1.01938 1.21524 0.95151 0.80388 1.03687 1.48532 1.64717 1.14491 1.07186 1.22047 1.03737 0.88094 0.86663 1.22212 1.00710 0.96162 0.94042 0.83204 1.20369 0.82996 0.81632 0.83423 1.90742 1.53613 1.69196 1.31599 1.45975 1.40533 1.13097 1.36447 1.20064 0.92321 0.87189 0.95617 1.19804 0.98246 0.95091 0.97789 1.21216 0.99103 0.91595 0.99547 1.21181 0.98680 0.97760 0.95938 1.20159 0.96638 0.94999 0.97049 1.19775 0.91860 0.88229 0.94277 1.42536 1.44583 1.12216 1.38829 1.19675 1.16001 0.90189 1.12254 0.90403 1.25592 0.99637 1.02693 0.98630 1.69833 1.29214 1.38385 1.24488 0.85113 0.78159 0.79658 0.76650 1.21352 1.22158 1.19270 1.21170 0.98685 0.93030 1.00753 1.21204 0.98041 0.96468 0.95913 1.22366 1.04672 0.95378 0.95518 1.21282 0.76033 0.88801 0.84098 1.90717 1.55594 1.76616 1.22951 0.94237 0.91269 0.89915 0.87945 0.91455 0.87547 0.90229 0.74736 0.90381 0.90694 0.83755 0.86153 0.95197 0.95305 0.79498 0.93967 0.86329 0.84034 0.87128 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.24 71.98 0.74 -0.63 16 2 C 0.11 1.17 6.65 86.38 0.57 1.75 16 3 N -0.62 -7.74 2.93 -817.99 -2.40 -10.14 16 4 C 0.12 1.06 6.66 86.83 0.58 1.64 16 5 C -0.11 -0.80 3.54 -10.48 -0.04 -0.83 16 6 H 0.15 0.29 8.14 -2.38 -0.02 0.27 16 7 C 0.53 6.79 7.07 87.66 0.62 7.41 16 8 O -0.57 -12.00 15.57 -3.05 -0.05 -12.05 16 9 N -0.71 -7.87 5.50 -466.79 -2.57 -10.44 16 10 C 0.17 2.65 5.80 85.64 0.50 3.15 16 11 C -0.11 -2.09 5.25 -19.86 -0.10 -2.19 16 12 C -0.10 -2.05 9.70 22.27 0.22 -1.84 16 13 C -0.12 -3.29 9.70 22.27 0.22 -3.07 16 14 C -0.09 -2.86 5.25 -19.87 -0.10 -2.96 16 15 C 0.18 7.37 6.38 85.63 0.55 7.91 16 16 N -0.74 -37.82 5.59 -347.18 -1.94 -39.76 16 17 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 21 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.12 -3.36 9.70 22.27 0.22 -3.14 16 26 C -0.10 -2.14 9.70 22.27 0.22 -1.92 16 27 C -0.14 -1.31 6.37 30.59 0.19 -1.11 16 28 C 0.51 8.72 8.02 87.90 0.71 9.43 16 29 O -0.58 -15.30 17.59 -3.01 -0.05 -15.35 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.91 7.92 -2.39 -0.02 0.90 16 35 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.98 7.06 -2.39 -0.02 0.96 16 37 H 0.42 2.96 8.46 -92.71 -0.78 2.17 16 38 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 39 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 43 H 0.03 1.14 8.09 -2.39 -0.02 1.12 16 44 H 0.37 20.60 7.66 -92.71 -0.71 19.89 16 45 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 47 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 48 H 0.11 1.08 7.89 -2.38 -0.02 1.07 16 49 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -77.34 413.36 1.15 -76.19 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.53 Total: 26.13 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.38 Total: -3.27 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.62 Total: -119.51 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.10 Total: -27.40 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.34 1.15 -76.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732316244.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.901 kcal (2) G-P(sol) polarization free energy of solvation -77.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds