Wall clock time and date at job start Wed Apr 1 2020 03:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35737 * 117.00058 * 2 1 4 4 C 1.39287 * 120.84946 * 0.25194 * 3 2 1 5 5 C 1.37954 * 119.09241 * 180.28876 * 4 3 2 6 6 N 1.31976 * 120.82086 * 359.70532 * 5 4 3 7 7 C 1.31941 * 121.86634 * 0.02562 * 6 5 4 8 8 C 1.37986 * 120.82567 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.46155 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47045 * 265.00173 * 9 8 7 11 11 O 1.21273 * 120.00188 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99750 * 179.97438 * 10 9 8 13 13 C 1.46888 * 120.46925 * 180.02562 * 12 10 9 14 14 C 1.53340 * 108.76168 * 124.47628 * 13 12 10 15 15 C 1.52671 * 109.11197 * 52.41268 * 14 13 12 16 16 C 1.53482 * 113.61895 * 170.87425 * 15 14 13 17 17 N 1.47674 * 85.98579 * 269.03741 * 16 15 14 18 18 C 1.36933 * 134.45375 * 155.66620 * 17 16 15 19 19 H 1.08003 * 120.00100 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00524 * 0.02562 * 18 17 16 21 21 N 1.31624 * 119.99485 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00514 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46900 * 90.00096 * 22 20 18 24 24 H 1.48499 * 109.47309 * 210.00444 * 22 20 18 25 25 H 1.48505 * 109.47081 * 330.00476 * 22 20 18 26 26 C 1.47660 * 91.08784 * 335.67895 * 17 16 15 27 27 C 1.52670 * 113.18776 * 302.41332 * 15 14 13 28 28 C 1.46888 * 120.46971 * 0.02562 * 12 10 9 29 29 H 1.09004 * 109.47055 * 59.99348 * 1 2 3 30 30 H 1.08995 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46908 * 299.99804 * 1 2 3 32 32 H 1.07997 * 120.45298 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.58723 * 179.72978 * 5 4 3 34 34 H 1.08002 * 119.58586 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47523 * 144.99705 * 9 8 7 36 36 H 1.09006 * 109.46640 * 24.99425 * 9 8 7 37 37 H 1.09001 * 109.58768 * 4.68902 * 13 12 10 38 38 H 1.08999 * 109.58832 * 244.25597 * 13 12 10 39 39 H 1.09000 * 109.52453 * 292.52388 * 14 13 12 40 40 H 1.09000 * 109.53078 * 172.31039 * 14 13 12 41 41 H 1.09001 * 113.78675 * 23.29892 * 16 15 14 42 42 H 1.08990 * 113.78921 * 154.76937 * 16 15 14 43 43 H 0.97003 * 119.99428 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.79624 * 270.05317 * 26 17 16 45 45 H 1.09004 * 113.79376 * 138.58282 * 26 17 16 46 46 H 1.08997 * 109.52828 * 177.47413 * 27 15 14 47 47 H 1.08997 * 109.53039 * 297.69675 * 27 15 14 48 48 H 1.08994 * 109.59041 * 355.30081 * 28 12 10 49 49 H 1.08996 * 109.58680 * 115.73920 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 0.0053 5 6 1.9677 3.5981 -0.0010 6 7 3.2866 3.6456 -0.0060 7 6 4.0231 2.5509 -0.0058 8 6 3.4346 1.3028 -0.0007 9 6 4.2838 0.0578 -0.0011 10 6 4.4593 -0.4301 -1.4160 11 8 3.9451 0.1733 -2.3337 12 7 5.1876 -1.5372 -1.6616 13 6 5.3659 -2.0217 -3.0368 14 6 6.8669 -2.1362 -3.3287 15 6 7.5274 -2.9678 -2.2319 16 6 8.9865 -3.3359 -2.5337 17 7 8.4405 -4.5579 -3.1575 18 6 8.8868 -5.4258 -4.1181 19 1 8.2790 -6.2706 -4.4070 20 6 10.1203 -5.2200 -4.7205 21 7 10.8612 -4.1908 -4.3681 22 14 10.7288 -6.4036 -6.0314 23 1 10.2773 -5.9375 -7.3671 24 1 12.2126 -6.4559 -6.0008 25 1 10.1802 -7.7583 -5.7683 26 6 7.2204 -4.4687 -2.3307 27 6 7.3182 -2.3928 -0.8331 28 6 5.8145 -2.2763 -0.5578 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2246 2.3567 0.0098 33 1 1.4009 4.5174 -0.0014 34 1 5.1000 2.6327 -0.0095 35 1 3.7953 -0.7154 0.5920 36 1 5.2596 0.2835 0.4291 37 1 4.9106 -1.3183 -3.7339 38 1 4.8973 -3.0000 -3.1431 39 1 7.3110 -1.1410 -3.3488 40 1 7.0145 -2.6219 -4.2932 41 1 9.4731 -2.6620 -3.2389 42 1 9.5851 -3.5267 -1.6430 43 1 11.7234 -4.0472 -4.7888 44 1 7.2941 -4.9961 -1.3797 45 1 6.3031 -4.6951 -2.8744 46 1 7.7737 -3.0536 -0.0957 47 1 7.7771 -1.4060 -0.7725 48 1 5.6549 -1.7407 0.3779 49 1 5.3773 -3.2725 -0.4903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035729607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:41 Heat of formation + Delta-G solvation = 22.955794 kcal Electronic energy + Delta-G solvation = -30608.889534 eV Core-core repulsion = 26538.349670 eV Total energy + Delta-G solvation = -4070.539864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.10097 -40.13412 -38.65415 -38.41076 -35.69908 -33.65140 -32.46255 -31.47045 -31.05861 -30.46890 -28.34976 -27.73927 -26.68578 -25.01942 -23.67686 -23.36941 -23.17528 -22.34561 -21.16601 -19.45875 -18.59450 -17.69861 -17.41263 -16.78447 -16.67309 -16.15684 -15.94237 -15.39292 -15.17851 -14.95938 -14.81765 -14.61399 -14.52678 -13.95129 -13.77193 -13.75593 -13.52420 -13.30139 -13.21405 -12.60195 -12.37476 -12.33156 -12.23309 -11.96743 -11.88359 -11.66588 -11.46651 -11.09155 -11.01671 -10.84708 -10.81251 -10.34849 -10.13841 -9.85186 -9.73007 -9.69252 -9.54476 -9.35686 -9.32155 -8.93225 -8.76879 -8.38249 -6.83815 -5.74342 -3.05922 0.83685 1.12480 2.72815 2.80344 3.09974 3.39989 3.44837 3.46668 3.61286 4.16567 4.35870 4.47474 4.50244 4.59321 4.64023 4.74601 4.78291 4.92760 4.97897 5.04350 5.07328 5.13300 5.23698 5.32096 5.34921 5.38505 5.46457 5.51290 5.58216 5.66932 5.72188 5.79307 5.90527 5.95133 5.99627 6.21410 6.28884 6.31013 6.33183 6.47291 6.64892 6.67062 6.83217 6.86872 6.90995 7.26002 7.40213 7.53996 7.61103 7.79154 8.01519 8.28425 9.07625 9.73737 10.64119 11.42657 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.002200 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.108274 B =12727.034980 C =13035.571748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.147 4.147 9 C -0.089 4.089 10 C 0.519 3.481 11 O -0.543 6.543 12 N -0.605 5.605 13 C 0.114 3.886 14 C -0.096 4.096 15 C -0.108 4.108 16 C 0.173 3.827 17 N -0.610 5.610 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.126 3.874 27 C -0.119 4.119 28 C 0.109 3.891 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.745 11.325 14.113 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.129 3.871 4 C -0.284 4.284 5 C -0.024 4.024 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.130 4.130 10 C 0.306 3.694 11 O -0.420 6.420 12 N -0.339 5.339 13 C -0.008 4.008 14 C -0.134 4.134 15 C -0.109 4.109 16 C 0.048 3.952 17 N -0.335 5.335 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.000 4.000 27 C -0.158 4.158 28 C -0.014 4.014 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.315 12.073 13.363 26.408 hybrid contribution -0.156 -1.608 -0.621 1.731 sum -19.471 10.465 12.742 25.514 Atomic orbital electron populations 1.23134 0.77791 1.04417 1.01532 1.86071 1.21837 1.26255 1.87473 1.19100 0.91820 0.84666 0.91501 1.22164 1.01399 0.93197 1.11636 1.22529 0.90355 0.96890 0.92659 1.67729 1.07079 1.31908 1.15179 1.22531 1.00277 0.86108 0.92138 1.19767 0.90832 0.96495 1.07893 1.20445 1.00860 0.95806 0.95854 1.20376 0.78184 0.80020 0.90779 1.90682 1.48554 1.56422 1.46342 1.48104 1.50688 1.26614 1.08447 1.21674 0.97472 0.99468 0.82145 1.21481 0.92835 0.99595 0.99467 1.22382 1.00499 0.95103 0.92956 1.22230 0.89921 0.88169 0.94887 1.45953 1.17543 1.29424 1.40621 1.19000 1.00762 1.04421 1.10661 0.90454 1.24762 0.96900 0.98553 1.00285 1.69820 1.12541 1.29546 1.44945 0.86160 0.77913 0.80270 0.81654 1.21579 1.21706 1.20783 1.22590 0.91435 0.92099 0.93850 1.21834 0.94344 1.01610 0.98020 1.21796 0.94124 0.96756 0.88748 0.92309 0.87845 0.92419 0.84471 0.82636 0.82202 0.87655 0.87619 0.89519 0.91600 0.92150 0.89571 0.91030 0.95772 0.93719 0.95176 0.94219 0.90664 0.91714 0.90283 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.16 16 2 O -0.31 -3.17 9.77 -18.92 -0.18 -3.35 16 3 C 0.18 2.02 6.70 -38.81 -0.26 1.76 16 4 C -0.26 -2.42 9.11 -39.30 -0.36 -2.78 16 5 C 0.13 1.27 11.17 -17.59 -0.20 1.08 16 6 N -0.51 -5.97 10.36 -13.33 -0.14 -6.11 16 7 C 0.15 1.63 10.83 -17.60 -0.19 1.44 16 8 C -0.15 -1.66 4.40 -104.34 -0.46 -2.12 16 9 C -0.09 -0.90 3.94 -29.03 -0.11 -1.02 16 10 C 0.52 7.18 7.69 -10.99 -0.08 7.10 16 11 O -0.54 -9.61 15.42 5.56 0.09 -9.52 16 12 N -0.61 -8.07 2.94 -172.67 -0.51 -8.57 16 13 C 0.11 1.72 6.30 -3.65 -0.02 1.70 16 14 C -0.10 -1.64 5.21 -26.72 -0.14 -1.78 16 15 C -0.11 -1.88 0.77 -154.42 -0.12 -2.00 16 16 C 0.17 3.94 6.64 -3.16 -0.02 3.92 16 17 N -0.61 -15.23 3.53 -179.77 -0.64 -15.87 16 18 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.25 11.39 55.49 0.63 -26.61 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.13 2.46 7.72 -3.15 -0.02 2.43 16 27 C -0.12 -1.57 5.26 -26.74 -0.14 -1.71 16 28 C 0.11 1.19 6.22 -3.67 -0.02 1.17 16 29 H 0.06 0.34 7.72 -51.93 -0.40 -0.06 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.26 7.70 -51.93 -0.40 -0.14 16 32 H 0.14 0.87 6.47 -52.49 -0.34 0.53 16 33 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 0.93 7.54 -51.93 -0.39 0.54 16 36 H 0.11 0.81 7.64 -51.93 -0.40 0.41 16 37 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 38 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.71 8.01 -51.93 -0.42 1.29 16 41 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 42 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 46 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.64 5.89 -51.93 -0.31 0.33 16 49 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -35.37 391.31 -8.79 -44.15 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.50 Total: -0.88 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.42 Total: 3.70 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.65 Total: -57.17 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.10 Total: -12.87 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.37 -8.79 -44.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035729607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.110 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds