Wall clock time and date at job start Wed Apr 1 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35737 * 117.00058 * 2 1 4 4 C 1.39287 * 120.84946 * 0.25194 * 3 2 1 5 5 C 1.37954 * 119.09241 * 180.28876 * 4 3 2 6 6 N 1.31976 * 120.82086 * 359.70532 * 5 4 3 7 7 C 1.31941 * 121.86634 * 0.02562 * 6 5 4 8 8 C 1.37986 * 120.82567 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.46155 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47045 * 265.00173 * 9 8 7 11 11 O 1.21273 * 120.00188 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99750 * 179.97438 * 10 9 8 13 13 C 1.46888 * 120.46925 * 180.02562 * 12 10 9 14 14 C 1.53340 * 108.76168 * 124.47628 * 13 12 10 15 15 C 1.52671 * 109.11197 * 52.41268 * 14 13 12 16 16 C 1.53482 * 113.61895 * 170.87425 * 15 14 13 17 17 N 1.47674 * 85.98579 * 269.03741 * 16 15 14 18 18 C 1.36933 * 134.45375 * 155.66620 * 17 16 15 19 19 H 1.08003 * 120.00100 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00524 * 0.02562 * 18 17 16 21 21 N 1.31624 * 119.99485 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00514 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46900 * 90.00096 * 22 20 18 24 24 H 1.48499 * 109.47309 * 210.00444 * 22 20 18 25 25 H 1.48505 * 109.47081 * 330.00476 * 22 20 18 26 26 C 1.47660 * 91.08784 * 335.67895 * 17 16 15 27 27 C 1.52670 * 113.18776 * 302.41332 * 15 14 13 28 28 C 1.46888 * 120.46971 * 0.02562 * 12 10 9 29 29 H 1.09004 * 109.47055 * 59.99348 * 1 2 3 30 30 H 1.08995 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46908 * 299.99804 * 1 2 3 32 32 H 1.07997 * 120.45298 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.58723 * 179.72978 * 5 4 3 34 34 H 1.08002 * 119.58586 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47523 * 144.99705 * 9 8 7 36 36 H 1.09006 * 109.46640 * 24.99425 * 9 8 7 37 37 H 1.09001 * 109.58768 * 4.68902 * 13 12 10 38 38 H 1.08999 * 109.58832 * 244.25597 * 13 12 10 39 39 H 1.09000 * 109.52453 * 292.52388 * 14 13 12 40 40 H 1.09000 * 109.53078 * 172.31039 * 14 13 12 41 41 H 1.09001 * 113.78675 * 23.29892 * 16 15 14 42 42 H 1.08990 * 113.78921 * 154.76937 * 16 15 14 43 43 H 0.97003 * 119.99428 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.79624 * 270.05317 * 26 17 16 45 45 H 1.09004 * 113.79376 * 138.58282 * 26 17 16 46 46 H 1.08997 * 109.52828 * 177.47413 * 27 15 14 47 47 H 1.08997 * 109.53039 * 297.69675 * 27 15 14 48 48 H 1.08994 * 109.59041 * 355.30081 * 28 12 10 49 49 H 1.08996 * 109.58680 * 115.73920 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 0.0053 5 6 1.9677 3.5981 -0.0010 6 7 3.2866 3.6456 -0.0060 7 6 4.0231 2.5509 -0.0058 8 6 3.4346 1.3028 -0.0007 9 6 4.2838 0.0578 -0.0011 10 6 4.4593 -0.4301 -1.4160 11 8 3.9451 0.1733 -2.3337 12 7 5.1876 -1.5372 -1.6616 13 6 5.3659 -2.0217 -3.0368 14 6 6.8669 -2.1362 -3.3287 15 6 7.5274 -2.9678 -2.2319 16 6 8.9865 -3.3359 -2.5337 17 7 8.4405 -4.5579 -3.1575 18 6 8.8868 -5.4258 -4.1181 19 1 8.2790 -6.2706 -4.4070 20 6 10.1203 -5.2200 -4.7205 21 7 10.8612 -4.1908 -4.3681 22 14 10.7288 -6.4036 -6.0314 23 1 10.2773 -5.9375 -7.3671 24 1 12.2126 -6.4559 -6.0008 25 1 10.1802 -7.7583 -5.7683 26 6 7.2204 -4.4687 -2.3307 27 6 7.3182 -2.3928 -0.8331 28 6 5.8145 -2.2763 -0.5578 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2246 2.3567 0.0098 33 1 1.4009 4.5174 -0.0014 34 1 5.1000 2.6327 -0.0095 35 1 3.7953 -0.7154 0.5920 36 1 5.2596 0.2835 0.4291 37 1 4.9106 -1.3183 -3.7339 38 1 4.8973 -3.0000 -3.1431 39 1 7.3110 -1.1410 -3.3488 40 1 7.0145 -2.6219 -4.2932 41 1 9.4731 -2.6620 -3.2389 42 1 9.5851 -3.5267 -1.6430 43 1 11.7234 -4.0472 -4.7888 44 1 7.2941 -4.9961 -1.3797 45 1 6.3031 -4.6951 -2.8744 46 1 7.7737 -3.0536 -0.0957 47 1 7.7771 -1.4060 -0.7725 48 1 5.6549 -1.7407 0.3779 49 1 5.3773 -3.2725 -0.4903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035729607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:40 Heat of formation + Delta-G solvation = -0.170495 kcal Electronic energy + Delta-G solvation = -30609.892365 eV Core-core repulsion = 26538.349670 eV Total energy + Delta-G solvation = -4071.542695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90534 -41.30492 -39.96748 -39.12251 -37.02350 -34.54258 -34.30177 -32.25589 -32.14725 -31.98272 -29.25207 -28.52132 -28.19432 -26.70372 -25.06604 -24.47968 -23.86721 -23.39812 -22.70576 -20.60690 -19.28920 -18.87597 -18.68378 -18.14162 -17.92511 -17.03235 -16.86412 -16.67582 -16.33938 -16.07938 -15.91019 -15.80247 -15.57491 -15.16908 -15.07162 -14.84143 -14.53946 -14.34046 -14.20684 -13.96377 -13.67779 -13.56739 -13.21560 -13.05657 -12.90544 -12.81941 -12.80144 -12.60865 -12.45915 -12.18380 -12.15166 -12.04649 -11.64432 -11.51543 -11.18961 -11.01416 -10.80419 -10.77857 -10.49448 -10.07354 -9.69105 -9.54583 -8.85681 -7.88171 -5.19753 0.11291 0.38329 1.43930 1.45687 1.53874 1.70317 2.08529 2.20813 2.48388 2.85644 3.32761 3.44531 3.49915 3.64810 3.67619 3.71817 3.86093 3.94729 4.01905 4.08488 4.22233 4.24654 4.32994 4.35641 4.36258 4.45097 4.47416 4.63443 4.68729 4.70506 4.73298 4.77941 4.80684 4.86230 4.93223 4.97656 4.99263 5.08269 5.10427 5.17353 5.24891 5.31589 5.38872 5.58240 5.61166 5.62760 5.79840 5.99122 6.22949 6.51780 6.95656 7.06104 7.24305 7.64619 8.62062 9.28625 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.002200 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.108274 B =12727.034980 C =13035.571748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.168 3.832 4 C -0.263 4.263 5 C 0.123 3.877 6 N -0.535 5.535 7 C 0.131 3.869 8 C -0.165 4.165 9 C -0.081 4.081 10 C 0.517 3.483 11 O -0.587 6.587 12 N -0.605 5.605 13 C 0.126 3.874 14 C -0.088 4.088 15 C -0.081 4.081 16 C 0.168 3.832 17 N -0.641 5.641 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.130 3.870 27 C -0.114 4.114 28 C 0.111 3.889 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.246 0.754 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.121 0.879 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.913 11.012 16.375 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.114 3.886 4 C -0.283 4.283 5 C -0.033 4.033 6 N -0.247 5.247 7 C -0.024 4.024 8 C -0.168 4.168 9 C -0.121 4.121 10 C 0.307 3.693 11 O -0.468 6.468 12 N -0.337 5.337 13 C 0.003 3.997 14 C -0.126 4.126 15 C -0.082 4.082 16 C 0.042 3.958 17 N -0.367 5.367 18 C -0.357 4.357 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.604 5.604 22 Si 0.803 3.197 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.005 3.995 27 C -0.152 4.152 28 C -0.011 4.011 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.095 0.905 32 H 0.182 0.818 33 H 0.200 0.800 34 H 0.189 0.811 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.139 0.861 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.521 11.737 15.668 29.093 hybrid contribution 0.425 -1.497 -1.331 2.048 sum -21.096 10.240 14.337 27.485 Atomic orbital electron populations 1.23410 0.75949 1.05833 1.02517 1.86036 1.23837 1.26137 1.87405 1.19377 0.92202 0.85461 0.91557 1.22466 1.02778 0.92508 1.10571 1.23041 0.90020 0.98305 0.91888 1.67738 1.08246 1.32486 1.16222 1.22806 1.01042 0.86257 0.92307 1.19954 0.91452 0.96862 1.08519 1.20490 1.02523 0.95800 0.93244 1.21062 0.77090 0.79241 0.91949 1.90664 1.50343 1.57673 1.48109 1.48173 1.50725 1.26798 1.08032 1.21377 0.95206 0.99520 0.83595 1.21336 0.94714 0.98711 0.97880 1.22090 0.95896 0.94482 0.95768 1.22181 0.92899 0.87223 0.93454 1.46348 1.19654 1.29607 1.41133 1.19390 1.00681 1.04502 1.11089 0.90184 1.25573 0.97495 1.00401 1.02829 1.70016 1.12590 1.31362 1.46406 0.85142 0.76820 0.78831 0.78949 1.21532 1.22202 1.19362 1.22781 0.89586 0.93425 0.93695 1.21812 0.96632 1.01946 0.94837 1.22005 0.91782 0.97933 0.89383 0.92187 0.86340 0.90512 0.81833 0.80012 0.81054 0.85716 0.84671 0.90905 0.90949 0.92789 0.93106 0.95053 0.96414 0.94496 0.93014 0.93467 0.89125 0.91029 0.86106 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.84 113.37 1.12 1.28 16 2 O -0.32 -6.00 9.77 -90.61 -0.89 -6.88 16 3 C 0.17 3.40 6.70 22.77 0.15 3.55 16 4 C -0.26 -4.32 9.11 22.45 0.20 -4.11 16 5 C 0.12 2.18 11.17 84.60 0.95 3.13 16 6 N -0.53 -12.07 10.36 -196.09 -2.03 -14.10 16 7 C 0.13 2.80 10.83 84.62 0.92 3.71 16 8 C -0.16 -3.43 4.40 -19.68 -0.09 -3.52 16 9 C -0.08 -1.38 3.94 29.10 0.11 -1.27 16 10 C 0.52 13.25 7.69 87.66 0.67 13.92 16 11 O -0.59 -20.49 15.42 -3.01 -0.05 -20.54 16 12 N -0.60 -14.64 2.94 -818.60 -2.41 -17.05 16 13 C 0.13 3.71 6.30 86.42 0.54 4.25 16 14 C -0.09 -3.06 5.21 30.60 0.16 -2.90 16 15 C -0.08 -2.76 0.77 -52.03 -0.04 -2.80 16 16 C 0.17 7.83 6.64 86.31 0.57 8.40 16 17 N -0.64 -32.46 3.53 -722.68 -2.55 -35.01 16 18 C -0.23 -12.87 10.70 84.03 0.90 -11.97 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 21 N -0.95 -58.56 11.39 21.65 0.25 -58.32 16 22 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.13 4.87 7.72 86.33 0.67 5.53 16 27 C -0.11 -2.65 5.26 30.59 0.16 -2.49 16 28 C 0.11 1.95 6.22 86.41 0.54 2.49 16 29 H 0.06 0.58 7.72 -2.39 -0.02 0.56 16 30 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.46 7.70 -2.38 -0.02 0.44 16 32 H 0.16 1.62 6.47 -2.91 -0.02 1.60 16 33 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.12 1.67 7.54 -2.39 -0.02 1.65 16 36 H 0.14 1.48 7.64 -2.38 -0.02 1.46 16 37 H 0.07 2.37 6.98 -2.39 -0.02 2.36 16 38 H 0.07 2.04 7.49 -2.39 -0.02 2.02 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 2.11 8.01 -2.39 -0.02 2.09 16 41 H 0.03 1.69 7.12 -2.39 -0.02 1.68 16 42 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 45 H 0.05 1.71 7.41 -2.38 -0.02 1.69 16 46 H 0.09 1.92 8.12 -2.39 -0.02 1.90 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.12 1.23 5.89 -2.39 -0.01 1.22 16 49 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -80.81 391.31 3.30 -77.50 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.95 Total: 12.19 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 8.00 Total: 13.61 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -6.75 Total: -124.48 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.93 Total: -27.42 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -80.81 3.30 -77.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035729607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.332 kcal (2) G-P(sol) polarization free energy of solvation -80.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds