Wall clock time and date at job start Wed Apr 1 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99960 * 2 1 4 4 H 1.48501 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47114 * 299.99633 * 3 2 1 6 6 H 1.48500 * 109.47350 * 60.00100 * 3 2 1 7 7 C 1.38809 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99655 * 146.21139 * 7 2 1 9 9 N 1.36931 * 120.00546 * 326.20372 * 7 2 1 10 10 C 1.47370 * 125.57745 * 347.43211 * 9 7 2 11 11 C 1.54615 * 104.94675 * 204.59029 * 10 9 7 12 12 C 1.54913 * 101.87418 * 323.25334 * 11 10 9 13 13 N 1.46500 * 112.78153 * 273.35579 * 12 11 10 14 14 C 1.34775 * 119.99912 * 295.93653 * 13 12 11 15 15 O 1.21595 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.47520 * 120.00265 * 179.97438 * 14 13 12 17 17 C 1.36597 * 125.77792 * 180.02562 * 16 14 13 18 18 N 1.34808 * 106.84187 * 179.97438 * 17 16 14 19 19 C 1.46498 * 126.59335 * 179.97438 * 18 17 16 20 20 C 1.53785 * 113.61449 * 14.14319 * 19 18 17 21 21 C 1.53961 * 87.01867 * 220.04581 * 20 19 18 22 22 C 1.53775 * 113.61881 * 276.53455 * 19 18 17 23 23 N 1.40210 * 106.81383 * 359.97438 * 18 17 16 24 24 N 1.28762 * 108.36387 * 359.75124 * 23 18 17 25 25 C 1.55244 * 108.83909 * 146.90135 * 12 11 10 26 26 C 1.54222 * 106.81968 * 246.33116 * 25 12 11 27 27 C 1.54750 * 104.15802 * 25.64278 * 26 25 12 28 28 C 1.46984 * 125.58021 * 167.73231 * 9 7 2 29 29 H 1.09004 * 111.81133 * 300.92346 * 28 9 7 30 30 H 0.96999 * 120.00425 * 174.26066 * 1 2 3 31 31 H 1.09003 * 110.36871 * 323.52736 * 10 9 7 32 32 H 1.08994 * 110.37319 * 85.86399 * 10 9 7 33 33 H 1.08996 * 111.08031 * 205.02408 * 11 10 9 34 34 H 1.08996 * 110.78257 * 81.35447 * 11 10 9 35 35 H 0.97001 * 119.99653 * 115.94177 * 13 12 11 36 36 H 1.08001 * 126.57438 * 0.02562 * 17 16 14 37 37 H 1.08996 * 112.84820 * 145.33329 * 19 18 17 38 38 H 1.09007 * 113.60975 * 334.56134 * 20 19 18 39 39 H 1.09000 * 113.61788 * 105.46418 * 20 19 18 40 40 H 1.08991 * 113.53274 * 270.80765 * 21 20 19 41 41 H 1.09004 * 113.66176 * 139.93289 * 21 20 19 42 42 H 1.09003 * 113.61548 * 254.53152 * 22 19 18 43 43 H 1.08999 * 113.61441 * 25.34357 * 22 19 18 44 44 H 1.08996 * 109.36410 * 127.29637 * 25 12 11 45 45 H 1.09001 * 110.56581 * 6.02260 * 25 12 11 46 46 H 1.09000 * 110.49011 * 266.97514 * 26 25 12 47 47 H 1.08997 * 110.60599 * 144.37032 * 26 25 12 48 48 H 1.09005 * 110.67119 * 203.76080 * 27 26 25 49 49 H 1.09000 * 110.67229 * 80.62077 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 2.9534 -1.2814 -0.5196 9 7 1.4990 -2.2876 0.6606 10 6 0.3771 -2.2601 1.6158 11 6 0.5894 -3.4990 2.5161 12 6 1.1371 -4.5374 1.5054 13 7 0.0743 -5.2712 0.8138 14 6 -0.7541 -6.0738 1.5110 15 8 -0.6196 -6.1885 2.7140 16 6 -1.8247 -6.8122 0.8147 17 6 -2.7267 -7.6534 1.4019 18 7 -3.5252 -8.1170 0.4196 19 6 -4.6427 -9.0521 0.5708 20 6 -5.0933 -9.2429 2.0288 21 6 -5.2596 -10.7372 1.6973 22 6 -4.2126 -10.5283 0.5906 23 7 -3.0804 -7.5323 -0.7746 24 7 -2.0817 -6.7659 -0.5037 25 6 2.1442 -5.4656 2.2363 26 6 3.5321 -5.1888 1.6235 27 6 3.4278 -3.7402 1.0892 28 6 1.9836 -3.6697 0.5372 29 1 1.9235 -4.0298 -0.4900 30 1 -0.4851 -0.8358 -0.0840 31 1 0.4083 -1.3478 2.2115 32 1 -0.5731 -2.3369 1.0873 33 1 -0.3528 -3.8352 2.9488 34 1 1.3217 -3.2896 3.2958 35 1 -0.0331 -5.1794 -0.1459 36 1 -2.7888 -7.8991 2.4517 37 1 -5.4633 -8.8455 -0.1162 38 1 -4.3084 -9.0422 2.7581 39 1 -6.0310 -8.7402 2.2654 40 1 -6.2497 -10.9915 1.3193 41 1 -4.9260 -11.4018 2.4943 42 1 -4.4403 -11.0618 -0.3323 43 1 -3.1861 -10.6795 0.9245 44 1 1.8635 -6.5056 2.0700 45 1 2.1582 -5.2495 3.3046 46 1 3.7343 -5.8828 0.8077 47 1 4.3087 -5.2597 2.3850 48 1 4.1527 -3.5706 0.2929 49 1 3.5665 -3.0213 1.8966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990743208.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:03 Heat of formation + Delta-G solvation = 86.146481 kcal Electronic energy + Delta-G solvation = -30918.824428 eV Core-core repulsion = 26883.317469 eV Total energy + Delta-G solvation = -4035.506959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.37931 -41.55223 -39.87521 -39.37415 -36.26407 -34.94463 -34.11026 -33.44411 -32.20448 -31.29735 -28.25029 -27.93815 -26.92593 -26.83455 -25.67826 -24.75054 -23.36778 -22.58545 -21.70115 -21.23000 -20.60290 -20.23001 -19.48873 -19.21360 -17.76608 -17.21415 -17.16631 -16.71403 -16.44875 -16.01975 -15.74679 -15.72130 -15.52083 -15.25655 -15.05965 -14.69307 -14.28706 -14.14356 -13.79642 -13.54727 -13.50473 -13.31607 -13.26108 -13.12914 -12.92071 -12.63222 -12.43907 -12.21752 -12.07144 -11.97369 -11.90609 -11.87143 -11.84526 -11.70737 -11.57301 -11.51598 -11.32434 -11.16597 -11.10037 -10.43612 -10.41773 -10.02682 -9.00821 -8.34601 -5.23885 0.07806 0.55251 1.03113 1.58083 1.65549 1.82438 2.01698 2.18951 2.65176 3.01722 3.12386 3.17093 3.26950 3.36011 3.51692 3.60403 3.72568 3.73995 3.80425 3.85225 3.85795 4.12511 4.24662 4.28062 4.35306 4.41625 4.47099 4.55406 4.58096 4.64331 4.73271 4.75793 4.79634 4.84035 4.88978 4.92528 4.95818 5.04975 5.05291 5.09478 5.17111 5.26095 5.26836 5.30805 5.49327 5.52407 5.57924 5.74613 6.30719 6.37898 6.83640 6.89275 7.08209 7.74091 8.32932 8.99159 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.002625 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.161612 B =10663.376738 C =11529.362192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.080 4.080 3 Si 1.112 2.888 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.155 3.845 11 C -0.117 4.117 12 C 0.168 3.832 13 N -0.693 5.693 14 C 0.607 3.393 15 O -0.552 6.552 16 C -0.124 4.124 17 C 0.110 3.890 18 N -0.335 5.335 19 C 0.101 3.899 20 C -0.143 4.143 21 C -0.121 4.121 22 C -0.144 4.144 23 N -0.091 5.091 24 N -0.233 5.233 25 C -0.100 4.100 26 C -0.110 4.110 27 C -0.119 4.119 28 C 0.149 3.851 29 H 0.038 0.962 30 H 0.251 0.749 31 H 0.020 0.980 32 H -0.008 1.008 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.406 0.594 36 H 0.234 0.766 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -25.678 6.647 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.276 4.276 3 Si 0.938 3.062 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.029 3.971 11 C -0.157 4.157 12 C 0.082 3.918 13 N -0.342 5.342 14 C 0.392 3.608 15 O -0.429 6.429 16 C -0.264 4.264 17 C -0.048 4.048 18 N -0.119 5.119 19 C 0.001 3.999 20 C -0.182 4.182 21 C -0.159 4.159 22 C -0.183 4.183 23 N -0.071 5.071 24 N -0.106 5.106 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.159 4.159 28 C 0.043 3.957 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.009 0.991 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.263 -23.949 5.962 26.027 hybrid contribution -0.213 -1.077 -0.173 1.112 sum -8.477 -25.026 5.789 27.050 Atomic orbital electron populations 1.70846 1.07946 1.29058 1.50475 1.26981 0.96234 1.04364 1.00045 0.82923 0.74638 0.72294 0.76393 1.19469 1.22163 1.21747 1.19922 1.03212 0.90483 1.32834 0.91732 1.44814 1.37865 1.03076 1.47770 1.21261 0.89648 0.95906 0.90255 1.22958 1.01713 0.94074 0.96910 1.21810 0.86819 0.90900 0.92319 1.45685 1.31815 1.44850 1.11827 1.16889 0.79825 0.78164 0.85875 1.90755 1.72650 1.65982 1.13561 1.21505 1.04980 1.09252 0.90677 1.23612 0.89430 0.93639 0.98116 1.50911 1.23797 1.31725 1.05515 1.24093 0.86216 0.87205 1.02388 1.23584 1.03774 0.98484 0.92322 1.22730 0.99806 0.95120 0.98234 1.23460 1.00955 0.92039 1.01827 1.81901 1.09695 1.10109 1.05366 1.74654 1.08748 1.12666 1.14488 1.22477 0.93458 0.98319 0.99670 1.22304 0.96398 0.95304 1.00778 1.22711 0.95800 0.97217 1.00136 1.22066 0.93905 0.84191 0.95577 0.94403 0.93883 0.96157 0.99066 0.90957 0.89644 0.75834 0.74960 0.83951 0.88175 0.88236 0.87587 0.88742 0.89225 0.89800 0.91517 0.90330 0.90727 0.89384 0.92148 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.02 12.87 21.65 0.28 -59.74 16 2 C -0.08 -4.73 4.95 84.86 0.42 -4.31 16 3 Si 1.11 52.91 30.03 68.60 2.06 54.97 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.34 -19.27 9.68 84.03 0.81 -18.46 16 8 H 0.06 3.66 8.02 -2.91 -0.02 3.64 16 9 N -0.61 -31.52 2.96 -664.19 -1.97 -33.49 16 10 C 0.16 7.83 5.32 86.76 0.46 8.29 16 11 C -0.12 -4.72 5.80 31.80 0.18 -4.53 16 12 C 0.17 6.11 0.78 5.76 0.00 6.11 16 13 N -0.69 -24.32 5.27 -416.36 -2.19 -26.52 16 14 C 0.61 20.00 7.03 86.69 0.61 20.61 16 15 O -0.55 -19.01 14.81 -4.02 -0.06 -19.07 16 16 C -0.12 -3.61 6.99 40.81 0.29 -3.33 16 17 C 0.11 2.28 10.49 83.85 0.88 3.16 16 18 N -0.34 -6.53 3.83 -324.05 -1.24 -7.77 16 19 C 0.10 1.03 5.05 45.52 0.23 1.26 16 20 C -0.14 -0.72 7.47 31.18 0.23 -0.48 16 21 C -0.12 -0.31 8.09 31.18 0.25 -0.06 16 22 C -0.14 -1.02 7.88 31.12 0.25 -0.78 16 23 N -0.09 -2.57 13.78 37.02 0.51 -2.06 16 24 N -0.23 -7.47 12.04 -49.99 -0.60 -8.07 16 25 C -0.10 -3.00 5.34 31.78 0.17 -2.83 16 26 C -0.11 -2.97 6.84 31.61 0.22 -2.75 16 27 C -0.12 -4.21 6.22 31.80 0.20 -4.02 16 28 C 0.15 6.22 3.61 46.24 0.17 6.39 16 29 H 0.04 1.65 7.97 -2.38 -0.02 1.63 16 30 H 0.25 16.52 6.46 -92.71 -0.60 15.92 16 31 H 0.02 1.12 7.81 -2.39 -0.02 1.10 16 32 H -0.01 -0.47 7.04 -2.39 -0.02 -0.48 16 33 H 0.07 2.89 6.84 -2.39 -0.02 2.87 16 34 H 0.09 3.23 7.60 -2.39 -0.02 3.21 16 35 H 0.41 14.65 8.17 -92.71 -0.76 13.89 16 36 H 0.23 3.07 6.78 -2.91 -0.02 3.05 16 37 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 0.46 6.39 -2.38 -0.02 0.45 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 1.94 7.47 -2.39 -0.02 1.92 16 45 H 0.08 2.28 7.41 -2.39 -0.02 2.26 16 46 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 49 H 0.06 2.30 8.09 -2.39 -0.02 2.28 16 Total: -1.00 -76.60 387.77 2.54 -74.06 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.39 Total: 23.42 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.37 Total: 4.27 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -5.22 Total: -137.65 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.06 Total: 54.97 kcal Total: -76.60 2.54 -74.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990743208.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.211 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds