Wall clock time and date at job start Wed Apr 1 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99847 * 2 1 4 4 H 1.48495 * 109.47125 * 270.00497 * 3 2 1 5 5 H 1.48502 * 109.46865 * 30.00708 * 3 2 1 6 6 H 1.48500 * 109.47109 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99426 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47294 * 64.99703 * 11 10 9 13 13 N 1.46505 * 109.47024 * 304.99744 * 11 10 9 14 14 C 1.34777 * 119.99724 * 155.00353 * 13 11 10 15 15 O 1.21713 * 120.00188 * 359.97438 * 14 13 11 16 16 C 1.46593 * 119.99587 * 179.72474 * 14 13 11 17 17 C 1.41158 * 126.56248 * 359.96080 * 16 14 13 18 18 N 1.30530 * 108.27173 * 179.87882 * 17 16 14 19 19 N 1.39986 * 109.37209 * 0.38611 * 18 17 16 20 20 C 1.38450 * 143.85314 * 179.74762 * 19 18 17 21 21 C 1.33069 * 108.42442 * 180.02562 * 20 19 18 22 22 N 1.38067 * 108.13846 * 0.02562 * 21 20 19 23 23 H 0.96995 * 126.16187 * 180.02562 * 22 21 20 24 24 C 1.35013 * 108.27199 * 359.75346 * 19 18 17 25 25 C 1.53001 * 109.46939 * 184.99702 * 11 10 9 26 26 C 1.52998 * 109.47602 * 300.00022 * 25 11 10 27 27 C 1.52999 * 109.47294 * 180.02562 * 26 25 11 28 28 C 1.52995 * 109.47259 * 59.99971 * 27 26 25 29 29 C 1.53003 * 109.46861 * 299.99709 * 28 27 26 30 30 C 1.52999 * 109.47083 * 60.00642 * 29 28 27 31 31 H 0.96999 * 120.00207 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00610 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46957 * 59.99808 * 10 9 7 34 34 H 1.09002 * 109.46680 * 300.00288 * 10 9 7 35 35 H 0.97000 * 119.99792 * 334.99921 * 13 11 10 36 36 H 1.07999 * 125.86576 * 0.02562 * 17 16 14 37 37 H 1.07998 * 125.78514 * 359.97438 * 20 19 18 38 38 H 1.08004 * 125.93631 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.47145 * 60.00560 * 25 11 10 40 40 H 1.08999 * 109.46680 * 300.00548 * 26 25 11 41 41 H 1.08995 * 109.46753 * 59.99667 * 26 25 11 42 42 H 1.09002 * 109.46828 * 299.99664 * 27 26 25 43 43 H 1.08998 * 109.47026 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.46956 * 180.02562 * 28 27 26 45 45 H 1.08994 * 109.47294 * 59.99820 * 28 27 26 46 46 H 1.08994 * 109.47257 * 300.00133 * 29 28 27 47 47 H 1.09002 * 109.46968 * 180.02562 * 29 28 27 48 48 H 1.09003 * 109.47199 * 179.97438 * 30 29 28 49 49 H 1.08994 * 109.47490 * 59.99634 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 6 5.6164 -2.1911 -0.0020 12 1 5.8942 -1.6985 0.9298 13 7 5.9517 -1.3220 -1.1327 14 6 7.0497 -0.5420 -1.0807 15 8 7.7623 -0.5594 -0.0942 16 6 7.3884 0.3231 -2.2145 17 6 6.6680 0.4475 -3.4220 18 7 7.2835 1.3152 -4.1783 19 7 8.4227 1.7847 -3.5139 20 6 9.5090 2.6361 -3.6226 21 6 10.2251 2.5492 -2.5044 22 7 9.6068 1.6417 -1.6675 23 1 9.9085 1.3806 -0.7835 24 6 8.4902 1.1785 -2.3095 25 6 6.3804 -3.5106 -0.1288 26 6 6.0303 -4.4183 1.0520 27 6 6.7948 -5.7376 0.9255 28 6 8.2989 -5.4574 0.9260 29 6 8.6490 -4.5498 -0.2549 30 6 7.8846 -3.2305 -0.1283 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 -0.0007 33 1 3.8485 -3.0417 -0.8925 34 1 3.8492 -3.0429 0.8875 35 1 5.3835 -1.3079 -1.9187 36 1 5.7617 -0.0824 -3.6756 37 1 9.7371 3.2637 -4.4715 38 1 11.1324 3.0940 -2.2887 39 1 6.1026 -4.0032 -1.0607 40 1 6.3081 -3.9257 1.9838 41 1 4.9587 -4.6175 1.0518 42 1 6.5173 -6.2303 -0.0064 43 1 6.5450 -6.3844 1.7664 44 1 8.8435 -6.3973 0.8354 45 1 8.5763 -4.9647 1.8578 46 1 8.3716 -5.0426 -1.1866 47 1 9.7207 -4.3506 -0.2547 48 1 8.1344 -2.5837 -0.9693 49 1 8.1621 -2.7377 0.8035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482414659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:42 Heat of formation + Delta-G solvation = 94.351378 kcal Electronic energy + Delta-G solvation = -31235.719380 eV Core-core repulsion = 27200.568212 eV Total energy + Delta-G solvation = -4035.151168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22802 -39.93973 -38.40482 -37.69596 -35.74006 -33.58595 -32.88849 -31.61876 -30.85127 -30.53546 -29.77636 -28.70085 -27.14384 -23.96277 -22.96536 -22.65218 -22.40786 -21.48455 -21.25264 -20.69917 -20.05596 -19.61592 -18.16936 -17.39836 -16.46061 -16.37003 -16.04886 -15.73151 -15.48125 -14.87210 -14.44748 -14.27438 -14.23641 -14.05123 -13.95224 -13.76211 -13.52202 -13.37461 -13.18770 -12.77072 -12.73835 -12.35477 -12.10811 -12.00934 -11.75705 -11.39818 -11.05195 -10.98064 -10.90742 -10.86841 -10.70749 -10.64188 -10.39491 -10.18069 -10.04651 -9.73897 -9.57663 -9.52048 -9.32856 -8.89006 -8.59009 -7.74803 -7.21970 -5.75582 -3.10923 1.41046 1.73607 1.85357 2.32079 2.61477 3.40243 3.46342 3.48459 3.58078 3.70836 4.20682 4.52073 4.61563 4.66878 4.75327 4.87264 4.87670 5.00844 5.07992 5.17687 5.34712 5.38463 5.41484 5.48886 5.53958 5.55282 5.62419 5.66365 5.67342 5.76463 5.78387 5.82388 5.94369 6.09589 6.12541 6.23377 6.29814 6.34482 6.35718 6.44296 6.47966 6.55760 6.64251 6.66772 6.73697 6.88297 6.99122 7.57135 7.95103 8.00798 8.43379 8.64466 9.23027 9.95482 10.15237 11.42701 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.006404 B = 0.005199 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4371.231412 B = 5384.820648 C = 9083.342892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.149 3.851 11 C 0.143 3.857 12 H 0.086 0.914 13 N -0.713 5.713 14 C 0.603 3.397 15 O -0.567 6.567 16 C -0.332 4.332 17 C 0.128 3.872 18 N -0.301 5.301 19 N -0.309 5.309 20 C 0.002 3.998 21 C 0.025 3.975 22 N -0.574 5.574 23 H 0.444 0.556 24 C 0.320 3.680 25 C -0.090 4.090 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.118 4.118 29 C -0.119 4.119 30 C -0.102 4.102 31 H 0.259 0.741 32 H 0.363 0.637 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.401 0.599 36 H 0.202 0.798 37 H 0.191 0.809 38 H 0.204 0.796 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.652 -2.138 -4.703 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.021 3.979 11 C 0.038 3.962 12 H 0.104 0.896 13 N -0.362 5.362 14 C 0.392 3.608 15 O -0.449 6.449 16 C -0.352 4.352 17 C -0.055 4.055 18 N -0.122 5.122 19 N -0.079 5.079 20 C -0.124 4.124 21 C -0.103 4.103 22 N -0.186 5.186 23 H 0.285 0.715 24 C 0.084 3.916 25 C -0.110 4.110 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.156 4.156 29 C -0.157 4.157 30 C -0.140 4.140 31 H 0.069 0.931 32 H 0.196 0.804 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.236 0.764 36 H 0.219 0.781 37 H 0.208 0.792 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.864 -1.587 -5.219 25.455 hybrid contribution 0.388 0.889 0.736 1.218 sum 25.252 -0.698 -4.483 25.656 Atomic orbital electron populations 1.69694 1.05075 1.25791 1.57559 1.24628 0.95142 0.97034 1.01978 0.86629 0.79309 0.85192 0.77950 1.20930 1.21799 1.20357 1.19043 0.80576 0.94688 1.43060 0.89138 1.42714 1.04018 1.02203 1.91134 1.20998 0.87498 0.89774 0.99634 1.21317 0.95205 0.89740 0.89966 0.89590 1.45690 1.26658 1.43082 1.20788 1.16763 0.80458 0.78328 0.85203 1.90725 1.51510 1.68917 1.33713 1.18551 1.01109 1.14468 1.01087 1.24098 0.97987 0.93480 0.89973 1.77509 0.95870 1.19674 1.19157 1.47057 1.18579 1.29848 1.12373 1.21569 0.87610 1.01164 1.02034 1.22260 1.01234 0.97325 0.89494 1.41557 1.20477 1.37610 1.18951 0.71450 1.19216 0.90563 0.95806 0.86053 1.21503 0.95457 0.95103 0.98982 1.21615 1.00405 0.95123 0.98209 1.21505 0.94973 0.97399 1.01520 1.21530 0.96287 0.98964 0.98795 1.21567 0.99369 0.96667 0.98097 1.21594 0.93838 0.95730 1.02836 0.93078 0.80373 0.94996 0.93895 0.76433 0.78144 0.79166 0.77929 0.91170 0.91891 0.91069 0.92181 0.92288 0.92761 0.92217 0.92579 0.92839 0.92152 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.65 27.74 -169.99 -4.71 17.94 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.59 5.24 -59.91 -0.31 -17.90 16 10 C 0.15 2.74 5.31 -4.04 -0.02 2.72 16 11 C 0.14 2.26 2.00 -67.93 -0.14 2.13 16 12 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 13 N -0.71 -10.97 4.40 -55.14 -0.24 -11.21 16 14 C 0.60 9.72 6.14 -12.89 -0.08 9.64 16 15 O -0.57 -10.04 14.03 5.18 0.07 -9.97 16 16 C -0.33 -4.97 6.15 -104.83 -0.65 -5.61 16 17 C 0.13 1.79 11.48 -17.00 -0.20 1.59 16 18 N -0.30 -4.45 12.61 30.85 0.39 -4.06 16 19 N -0.31 -4.04 4.67 -11.88 -0.06 -4.10 16 20 C 0.00 0.02 11.91 -16.36 -0.19 -0.17 16 21 C 0.02 0.15 11.92 -16.54 -0.20 -0.05 16 22 N -0.57 -5.39 6.24 -11.98 -0.07 -5.47 16 23 H 0.44 3.51 8.96 -40.82 -0.37 3.15 16 24 C 0.32 4.31 8.38 -154.52 -1.29 3.02 16 25 C -0.09 -1.20 1.96 -90.62 -0.18 -1.38 16 26 C -0.12 -1.42 4.85 -26.73 -0.13 -1.55 16 27 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 28 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 29 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 30 C -0.10 -1.36 3.73 -26.73 -0.10 -1.46 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.58 5.20 -40.82 -0.21 8.37 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.80 6.71 -51.93 -0.35 0.45 16 35 H 0.40 5.76 7.54 -40.82 -0.31 5.45 16 36 H 0.20 2.23 7.49 -52.49 -0.39 1.84 16 37 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.20 0.21 8.06 -52.48 -0.42 -0.22 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.89 5.77 -51.93 -0.30 0.59 16 49 H 0.07 1.02 7.52 -51.93 -0.39 0.63 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -36.60 386.26 -9.53 -46.14 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.29 Total: 13.60 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.90 Total: -2.24 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: 0.48 Total: -71.29 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.60 -9.53 -46.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482414659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.490 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds