Wall clock time and date at job start Wed Apr 1 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99847 * 2 1 4 4 H 1.48495 * 109.47125 * 270.00497 * 3 2 1 5 5 H 1.48502 * 109.46865 * 30.00708 * 3 2 1 6 6 H 1.48500 * 109.47109 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99426 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47294 * 64.99703 * 11 10 9 13 13 N 1.46505 * 109.47024 * 304.99744 * 11 10 9 14 14 C 1.34777 * 119.99724 * 155.00353 * 13 11 10 15 15 O 1.21713 * 120.00188 * 359.97438 * 14 13 11 16 16 C 1.46593 * 119.99587 * 179.72474 * 14 13 11 17 17 C 1.41158 * 126.56248 * 359.96080 * 16 14 13 18 18 N 1.30530 * 108.27173 * 179.87882 * 17 16 14 19 19 N 1.39986 * 109.37209 * 0.38611 * 18 17 16 20 20 C 1.38450 * 143.85314 * 179.74762 * 19 18 17 21 21 C 1.33069 * 108.42442 * 180.02562 * 20 19 18 22 22 N 1.38067 * 108.13846 * 0.02562 * 21 20 19 23 23 H 0.96995 * 126.16187 * 180.02562 * 22 21 20 24 24 C 1.35013 * 108.27199 * 359.75346 * 19 18 17 25 25 C 1.53001 * 109.46939 * 184.99702 * 11 10 9 26 26 C 1.52998 * 109.47602 * 300.00022 * 25 11 10 27 27 C 1.52999 * 109.47294 * 180.02562 * 26 25 11 28 28 C 1.52995 * 109.47259 * 59.99971 * 27 26 25 29 29 C 1.53003 * 109.46861 * 299.99709 * 28 27 26 30 30 C 1.52999 * 109.47083 * 60.00642 * 29 28 27 31 31 H 0.96999 * 120.00207 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00610 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46957 * 59.99808 * 10 9 7 34 34 H 1.09002 * 109.46680 * 300.00288 * 10 9 7 35 35 H 0.97000 * 119.99792 * 334.99921 * 13 11 10 36 36 H 1.07999 * 125.86576 * 0.02562 * 17 16 14 37 37 H 1.07998 * 125.78514 * 359.97438 * 20 19 18 38 38 H 1.08004 * 125.93631 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.47145 * 60.00560 * 25 11 10 40 40 H 1.08999 * 109.46680 * 300.00548 * 26 25 11 41 41 H 1.08995 * 109.46753 * 59.99667 * 26 25 11 42 42 H 1.09002 * 109.46828 * 299.99664 * 27 26 25 43 43 H 1.08998 * 109.47026 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.46956 * 180.02562 * 28 27 26 45 45 H 1.08994 * 109.47294 * 59.99820 * 28 27 26 46 46 H 1.08994 * 109.47257 * 300.00133 * 29 28 27 47 47 H 1.09002 * 109.46968 * 180.02562 * 29 28 27 48 48 H 1.09003 * 109.47199 * 179.97438 * 30 29 28 49 49 H 1.08994 * 109.47490 * 59.99634 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 6 5.6164 -2.1911 -0.0020 12 1 5.8942 -1.6985 0.9298 13 7 5.9517 -1.3220 -1.1327 14 6 7.0497 -0.5420 -1.0807 15 8 7.7623 -0.5594 -0.0942 16 6 7.3884 0.3231 -2.2145 17 6 6.6680 0.4475 -3.4220 18 7 7.2835 1.3152 -4.1783 19 7 8.4227 1.7847 -3.5139 20 6 9.5090 2.6361 -3.6226 21 6 10.2251 2.5492 -2.5044 22 7 9.6068 1.6417 -1.6675 23 1 9.9085 1.3806 -0.7835 24 6 8.4902 1.1785 -2.3095 25 6 6.3804 -3.5106 -0.1288 26 6 6.0303 -4.4183 1.0520 27 6 6.7948 -5.7376 0.9255 28 6 8.2989 -5.4574 0.9260 29 6 8.6490 -4.5498 -0.2549 30 6 7.8846 -3.2305 -0.1283 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 -0.0007 33 1 3.8485 -3.0417 -0.8925 34 1 3.8492 -3.0429 0.8875 35 1 5.3835 -1.3079 -1.9187 36 1 5.7617 -0.0824 -3.6756 37 1 9.7371 3.2637 -4.4715 38 1 11.1324 3.0940 -2.2887 39 1 6.1026 -4.0032 -1.0607 40 1 6.3081 -3.9257 1.9838 41 1 4.9587 -4.6175 1.0518 42 1 6.5173 -6.2303 -0.0064 43 1 6.5450 -6.3844 1.7664 44 1 8.8435 -6.3973 0.8354 45 1 8.5763 -4.9647 1.8578 46 1 8.3716 -5.0426 -1.1866 47 1 9.7207 -4.3506 -0.2547 48 1 8.1344 -2.5837 -0.9693 49 1 8.1621 -2.7377 0.8035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482414659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:41 Heat of formation + Delta-G solvation = 69.471617 kcal Electronic energy + Delta-G solvation = -31236.798247 eV Core-core repulsion = 27200.568212 eV Total energy + Delta-G solvation = -4036.230035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.07111 -41.13538 -39.34261 -38.72382 -37.25645 -35.29112 -33.79011 -33.25316 -32.32013 -31.51864 -30.64696 -29.65183 -28.61673 -25.49841 -24.18948 -23.60823 -23.32454 -22.87869 -22.11053 -21.80456 -21.28480 -20.59870 -19.82285 -18.85081 -17.50463 -17.30496 -17.04597 -16.87511 -16.56553 -16.32882 -15.90083 -15.51064 -15.20188 -15.15788 -14.98007 -14.88313 -14.78388 -14.50755 -14.41291 -14.15988 -13.86755 -13.64809 -13.61217 -13.11711 -12.95055 -12.89195 -12.71326 -12.34130 -12.16730 -12.05054 -11.93344 -11.85107 -11.77417 -11.57846 -11.37116 -11.11338 -11.01438 -10.81502 -10.69847 -10.18543 -9.83581 -9.28805 -8.64881 -8.03000 -5.34612 0.65832 0.77642 1.04084 1.34957 1.36159 1.42135 1.44577 1.93686 2.38261 2.45326 2.54043 3.29493 3.33172 3.49927 3.76164 3.82821 3.90493 3.98799 4.08527 4.11099 4.17144 4.31570 4.39235 4.47438 4.51657 4.53598 4.60961 4.68751 4.71888 4.72413 4.76176 4.83609 4.85743 4.95389 5.05268 5.17891 5.23924 5.32832 5.34041 5.38143 5.40681 5.46162 5.52320 5.64143 5.73657 5.78408 5.82232 6.21318 6.22200 6.61204 6.76186 7.07747 7.42506 7.84242 8.02231 9.18579 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.006404 B = 0.005199 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4371.231412 B = 5384.820648 C = 9083.342892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.053 4.053 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.225 4.225 8 H 0.066 0.934 9 N -0.756 5.756 10 C 0.149 3.851 11 C 0.155 3.845 12 H 0.063 0.937 13 N -0.713 5.713 14 C 0.602 3.398 15 O -0.590 6.590 16 C -0.361 4.361 17 C 0.124 3.876 18 N -0.330 5.330 19 N -0.313 5.313 20 C -0.030 4.030 21 C 0.058 3.942 22 N -0.566 5.566 23 H 0.450 0.550 24 C 0.295 3.705 25 C -0.082 4.082 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.116 4.116 29 C -0.116 4.116 30 C -0.092 4.092 31 H 0.257 0.743 32 H 0.363 0.637 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.406 0.594 36 H 0.217 0.783 37 H 0.221 0.779 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.862 -1.869 -5.104 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.245 4.245 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.356 4.356 8 H 0.084 0.916 9 N -0.402 5.402 10 C 0.023 3.977 11 C 0.049 3.951 12 H 0.081 0.919 13 N -0.362 5.362 14 C 0.394 3.606 15 O -0.473 6.473 16 C -0.381 4.381 17 C -0.059 4.059 18 N -0.152 5.152 19 N -0.084 5.084 20 C -0.154 4.154 21 C -0.069 4.069 22 N -0.178 5.178 23 H 0.293 0.707 24 C 0.057 3.943 25 C -0.102 4.102 26 C -0.153 4.153 27 C -0.150 4.150 28 C -0.153 4.153 29 C -0.153 4.153 30 C -0.130 4.130 31 H 0.066 0.934 32 H 0.196 0.804 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.241 0.759 36 H 0.233 0.767 37 H 0.237 0.763 38 H 0.277 0.723 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 28.128 -1.338 -5.632 28.717 hybrid contribution -0.475 0.801 0.872 1.276 sum 27.653 -0.537 -4.760 28.065 Atomic orbital electron populations 1.69843 1.06762 1.26418 1.60021 1.25281 0.95828 1.00327 1.03065 0.85603 0.78070 0.81050 0.78148 1.20141 1.22361 1.19552 1.19056 0.82457 0.93583 1.40551 0.91595 1.42726 1.02556 1.04001 1.90904 1.21147 0.88746 0.87808 1.00016 1.21116 0.93541 0.91035 0.89360 0.91860 1.45650 1.26787 1.43124 1.20656 1.16949 0.80153 0.78217 0.85327 1.90696 1.52218 1.69735 1.34653 1.18530 1.02706 1.15707 1.01155 1.24360 0.98438 0.93422 0.89661 1.77366 0.97125 1.20456 1.20249 1.47318 1.18820 1.30223 1.11991 1.22467 0.86864 1.01764 1.04291 1.23292 1.01377 0.94813 0.87378 1.41818 1.19294 1.37346 1.19376 0.70696 1.19386 0.91624 0.96301 0.87012 1.21434 0.95165 0.93732 0.99848 1.21611 1.00485 0.95960 0.97281 1.21491 0.94843 0.96304 1.02399 1.21519 0.96237 0.99504 0.98059 1.21540 0.99339 0.95529 0.98913 1.21434 0.93903 0.96589 1.01025 0.93380 0.80404 0.93857 0.93659 0.75900 0.76690 0.76259 0.72323 0.90338 0.92707 0.91485 0.91503 0.91134 0.90919 0.92665 0.91892 0.92291 0.93708 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.86 13.97 21.65 0.30 -62.56 16 2 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 3 Si 0.94 47.43 27.74 68.60 1.90 49.33 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.27 -13.07 6.52 99.48 0.65 -12.42 16 7 C -0.23 -12.74 10.47 84.04 0.88 -11.86 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.76 -35.20 5.24 -343.46 -1.80 -37.00 16 10 C 0.15 5.47 5.31 86.38 0.46 5.93 16 11 C 0.15 4.92 2.00 44.99 0.09 5.01 16 12 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 13 N -0.71 -22.02 4.40 -446.57 -1.96 -23.99 16 14 C 0.60 19.63 6.14 86.42 0.53 20.16 16 15 O -0.59 -21.17 14.03 -4.39 -0.06 -21.24 16 16 C -0.36 -10.86 6.15 -20.00 -0.12 -10.98 16 17 C 0.12 3.49 11.48 85.60 0.98 4.47 16 18 N -0.33 -9.73 12.61 -56.32 -0.71 -10.44 16 19 N -0.31 -7.86 4.67 -191.51 -0.89 -8.75 16 20 C -0.03 -0.42 11.91 82.49 0.98 0.56 16 21 C 0.06 0.48 11.92 82.55 0.98 1.47 16 22 N -0.57 -9.41 6.24 -191.82 -1.20 -10.60 16 23 H 0.45 6.24 8.96 -92.71 -0.83 5.41 16 24 C 0.30 7.73 8.38 133.14 1.12 8.85 16 25 C -0.08 -2.12 1.96 -10.79 -0.02 -2.14 16 26 C -0.12 -2.74 4.85 30.59 0.15 -2.59 16 27 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 28 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 29 C -0.12 -2.40 5.92 30.60 0.18 -2.22 16 30 C -0.09 -2.40 3.73 30.60 0.11 -2.29 16 31 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.36 17.01 5.20 -92.71 -0.48 16.53 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.05 1.68 6.71 -2.39 -0.02 1.66 16 35 H 0.41 11.66 7.54 -92.71 -0.70 10.96 16 36 H 0.22 4.87 7.49 -2.91 -0.02 4.85 16 37 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.26 -1.06 8.06 -2.91 -0.02 -1.09 16 39 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.64 6.54 -2.39 -0.02 1.62 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.04 1.31 5.77 -2.39 -0.01 1.30 16 49 H 0.05 1.44 7.52 -2.39 -0.02 1.42 16 Total: -1.00 -81.59 386.26 1.66 -79.93 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -1.07 Total: 37.59 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.15 Total: 7.73 kcal Atomic # 7 Polarization: -147.08 SS G_CDS: -6.26 Total: -153.34 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.06 Total: -21.24 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.90 Total: 49.33 kcal Total: -81.59 1.66 -79.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482414659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.398 kcal (2) G-P(sol) polarization free energy of solvation -81.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds