Wall clock time and date at job start Wed Apr 1 2020 04:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47034 * 120.00650 * 2 1 3 5 5 C 1.53001 * 109.47315 * 64.99512 * 4 2 1 6 6 N 1.46899 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.46908 * 111.00060 * 66.04771 * 6 5 4 8 8 C 1.50696 * 109.47499 * 199.13133 * 7 6 5 9 9 H 1.08005 * 119.99420 * 355.09180 * 8 7 6 10 10 C 1.37872 * 120.00402 * 175.09099 * 8 7 6 11 11 N 1.31514 * 120.00251 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99737 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47164 * 89.99718 * 12 10 8 14 14 H 1.48496 * 109.47012 * 209.99769 * 12 10 8 15 15 H 1.48499 * 109.47140 * 329.99600 * 12 10 8 16 16 C 1.46896 * 111.00023 * 189.99872 * 6 5 4 17 17 N 1.46505 * 109.47002 * 84.39108 * 16 6 5 18 18 N 1.40019 * 126.26248 * 75.19078 * 17 16 6 19 19 N 1.23646 * 109.31973 * 180.02562 * 18 17 16 20 20 N 1.40031 * 109.31520 * 0.02562 * 19 18 17 21 21 C 1.40139 * 126.25811 * 180.02562 * 20 19 18 22 22 C 1.38847 * 120.06885 * 0.02562 * 21 20 19 23 23 C 1.38112 * 119.93335 * 179.97438 * 22 21 20 24 24 C 1.38282 * 120.06667 * 359.97438 * 23 22 21 25 25 C 1.38286 * 120.13489 * 0.02562 * 24 23 22 26 26 C 1.38110 * 120.07130 * 359.97438 * 25 24 23 27 27 C 1.35046 * 107.47840 * 0.25853 * 20 19 18 28 28 O 1.21815 * 126.79768 * 179.74323 * 27 20 19 29 29 H 1.08995 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47015 * 299.99911 * 1 2 3 31 31 H 1.08999 * 109.46826 * 59.99757 * 1 2 3 32 32 H 1.09005 * 109.47032 * 240.00362 * 2 1 3 33 33 H 1.08999 * 109.46878 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46844 * 299.99987 * 3 2 1 35 35 H 1.08997 * 109.46832 * 60.00517 * 3 2 1 36 36 H 1.09000 * 109.46723 * 304.99524 * 4 2 1 37 37 H 1.08997 * 109.47159 * 185.00072 * 4 2 1 38 38 H 1.08998 * 109.46713 * 60.00424 * 5 4 2 39 39 H 1.08991 * 109.47023 * 300.00375 * 5 4 2 40 40 H 1.09001 * 109.47042 * 319.13336 * 7 6 5 41 41 H 1.08995 * 109.46831 * 79.12968 * 7 6 5 42 42 H 0.97005 * 119.99809 * 180.02562 * 11 10 8 43 43 H 1.08999 * 109.47226 * 324.38735 * 16 6 5 44 44 H 1.08998 * 109.47480 * 204.38719 * 16 6 5 45 45 H 1.08001 * 120.03342 * 359.70428 * 22 21 20 46 46 H 1.07997 * 119.96704 * 179.97438 * 23 22 21 47 47 H 1.07999 * 119.93313 * 179.97438 * 24 23 22 48 48 H 1.08003 * 119.96093 * 180.02562 * 25 24 23 49 49 H 1.07997 * 120.03932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6351 -2.1956 1.1878 6 7 2.1253 -2.8883 2.3869 7 6 1.4523 -2.3910 3.5943 8 6 2.2691 -2.7500 4.8088 9 1 3.1535 -3.3609 4.7034 10 6 1.8875 -2.2986 6.0544 11 7 2.6006 -2.6115 7.1142 12 14 0.3574 -1.2425 6.2367 13 1 -0.8221 -2.1152 6.4654 14 1 0.5248 -0.3238 7.3912 15 1 0.1532 -0.4489 4.9982 16 6 1.9660 -4.3428 2.2567 17 7 3.1108 -4.8962 1.5290 18 7 4.4015 -5.0870 2.0372 19 7 5.1205 -5.5723 1.1561 20 7 4.3685 -5.7445 -0.0126 21 6 4.8323 -6.2681 -1.2270 22 6 6.1542 -6.6746 -1.3497 23 6 6.6082 -7.1908 -2.5476 24 6 5.7474 -7.3034 -3.6240 25 6 4.4303 -6.8994 -3.5049 26 6 3.9703 -6.3825 -2.3096 27 6 3.1161 -5.3089 0.2431 28 8 2.1762 -5.2943 -0.5317 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6054 -0.2619 2.1369 37 1 3.1263 -0.6445 1.2951 38 1 2.0698 -2.6550 0.3001 39 1 0.5489 -2.2724 1.1419 40 1 1.3495 -1.3075 3.5329 41 1 0.4649 -2.8457 3.6732 42 1 2.3318 -2.2941 7.9905 43 1 1.0484 -4.5603 1.7102 44 1 1.9138 -4.7928 3.2481 45 1 6.8280 -6.5832 -0.5105 46 1 7.6364 -7.5067 -2.6438 47 1 6.1048 -7.7069 -4.5598 48 1 3.7603 -6.9890 -4.3472 49 1 2.9415 -6.0675 -2.2170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728901572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:03 Heat of formation + Delta-G solvation = 115.691859 kcal Electronic energy + Delta-G solvation = -30627.087579 eV Core-core repulsion = 26592.861804 eV Total energy + Delta-G solvation = -4034.225775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.91864 -39.42463 -38.23717 -37.78637 -35.90295 -34.66224 -32.98159 -32.35203 -31.19774 -29.98224 -29.27013 -27.91401 -27.10298 -25.36203 -24.47648 -23.33812 -22.75306 -21.89325 -21.56003 -20.46822 -19.56513 -18.63863 -17.26194 -16.95561 -16.73963 -16.54665 -16.20443 -15.21345 -15.03222 -14.99688 -14.69628 -14.45301 -14.11792 -13.70215 -13.65255 -13.56611 -13.49013 -13.33808 -13.19549 -12.83685 -12.71266 -12.43970 -12.19647 -12.12310 -12.01442 -11.77916 -11.57116 -11.49954 -11.32533 -11.21005 -10.83094 -10.64756 -10.55847 -10.47230 -10.25690 -10.05990 -9.94391 -9.65192 -9.29697 -9.21517 -8.65747 -8.44059 -7.79599 -6.12053 -4.11149 0.78772 1.10991 1.13270 1.55137 2.40834 2.92503 3.21550 3.29470 3.30979 3.58726 3.93855 4.33605 4.38252 4.68201 4.77653 4.90243 4.94838 4.98931 5.05934 5.09908 5.12983 5.17520 5.19581 5.43370 5.44532 5.51086 5.65907 5.70206 5.75854 5.79298 5.81277 5.85868 5.91254 5.98882 6.00733 6.02168 6.15243 6.20613 6.22224 6.25377 6.30305 6.31566 6.50690 6.60917 6.62348 6.69243 6.73605 7.42280 7.54776 7.68975 7.71275 7.90468 8.52277 8.99201 9.47779 11.00595 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.003241 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.378164 B = 8637.952676 C =10434.761517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.053 3.947 6 N -0.538 5.538 7 C 0.165 3.835 8 C -0.516 4.516 9 H 0.086 0.914 10 C 0.073 3.927 11 N -0.893 5.893 12 Si 0.870 3.130 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.266 1.266 16 C 0.315 3.685 17 N -0.443 5.443 18 N 0.073 4.927 19 N 0.002 4.998 20 N -0.426 5.426 21 C 0.179 3.821 22 C -0.127 4.127 23 C -0.097 4.097 24 C -0.134 4.134 25 C -0.095 4.095 26 C -0.139 4.139 27 C 0.645 3.355 28 O -0.527 6.527 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.044 0.956 41 H -0.009 1.009 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.139 0.861 46 H 0.131 0.869 47 H 0.126 0.874 48 H 0.131 0.869 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -4.561 -19.871 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.148 4.148 5 C -0.075 4.075 6 N -0.263 5.263 7 C 0.040 3.960 8 C -0.554 4.554 9 H 0.104 0.896 10 C -0.129 4.129 11 N -0.532 5.532 12 Si 0.697 3.303 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.191 1.191 16 C 0.105 3.895 17 N -0.275 5.275 18 N 0.076 4.924 19 N 0.005 4.995 20 N -0.245 5.245 21 C 0.087 3.913 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.153 4.153 25 C -0.113 4.113 26 C -0.160 4.160 27 C 0.343 3.657 28 O -0.397 6.397 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.008 0.992 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.144 0.856 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.144 0.856 48 H 0.149 0.851 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.928 -4.361 -19.302 20.004 hybrid contribution -2.089 0.550 -0.175 2.167 sum 0.839 -3.811 -19.478 19.865 Atomic orbital electron populations 1.21893 0.95549 1.01788 1.01343 1.21096 0.95723 0.96132 0.98543 1.21813 1.00966 0.96028 1.01402 1.21662 1.01725 0.94005 0.97428 1.22223 0.97379 0.95042 0.92806 1.61468 1.59245 1.01727 1.03822 1.20296 0.92469 0.96307 0.86978 1.21039 1.12161 1.33420 0.88762 0.89598 1.24865 0.96437 0.95788 0.95831 1.69888 1.38847 1.45607 0.98837 0.86959 0.84020 0.81168 0.78161 1.20243 1.21079 1.19123 1.22214 0.80529 0.89271 0.97503 1.50839 1.09035 1.57362 1.10290 1.79808 0.89295 1.05772 1.17520 1.79825 1.17898 1.13179 0.88610 1.47324 1.09485 1.57329 1.10409 1.17418 0.94150 0.98307 0.81454 1.20913 0.93463 1.00870 0.99502 1.21001 1.00026 0.98507 0.92059 1.21235 0.93868 1.01097 0.99090 1.21017 0.95914 0.97689 0.96711 1.21427 1.01542 1.01444 0.91562 1.17000 0.83638 0.81233 0.83785 1.91031 1.36708 1.61472 1.50483 0.92541 0.92666 0.93184 0.91691 0.92741 0.93107 0.92630 0.91069 0.91293 0.92267 0.94777 0.93833 0.99153 0.92546 0.90016 0.85568 0.84358 0.85072 0.85607 0.85137 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.95 37.16 0.33 -1.48 16 2 C -0.10 -1.25 2.92 -90.62 -0.26 -1.52 16 3 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 4 C -0.11 -1.76 4.65 -26.73 -0.12 -1.88 16 5 C 0.05 0.90 4.55 -3.82 -0.02 0.88 16 6 N -0.54 -10.47 4.53 -239.99 -1.09 -11.56 16 7 C 0.16 3.62 3.64 -4.97 -0.02 3.61 16 8 C -0.52 -13.62 9.05 -34.44 -0.31 -13.94 16 9 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 10 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 11 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 12 Si 0.87 20.31 27.57 -169.99 -4.69 15.62 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.27 -5.92 6.40 56.52 0.36 -5.56 16 16 C 0.31 5.63 6.08 -63.31 -0.38 5.24 16 17 N -0.44 -7.86 3.86 -68.06 -0.26 -8.12 16 18 N 0.07 1.32 13.55 60.35 0.82 2.13 16 19 N 0.00 0.03 12.86 60.35 0.78 0.80 16 20 N -0.43 -6.70 3.80 -14.01 -0.05 -6.75 16 21 C 0.18 2.41 6.69 -83.60 -0.56 1.85 16 22 C -0.13 -1.40 9.67 -39.40 -0.38 -1.78 16 23 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 24 C -0.13 -1.09 10.04 -39.55 -0.40 -1.49 16 25 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 26 C -0.14 -1.72 9.40 -39.40 -0.37 -2.09 16 27 C 0.65 11.11 8.42 -86.42 -0.73 10.38 16 28 O -0.53 -9.45 15.04 5.09 0.08 -9.38 16 29 H 0.06 0.71 6.57 -51.93 -0.34 0.36 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.23 6.25 -51.93 -0.32 0.90 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 39 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 40 H 0.04 0.98 4.60 -51.93 -0.24 0.74 16 41 H -0.01 -0.20 7.68 -51.93 -0.40 -0.60 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.08 1.32 7.62 -51.93 -0.40 0.93 16 44 H 0.13 2.36 7.20 -51.93 -0.37 1.99 16 45 H 0.14 1.44 7.71 -52.49 -0.40 1.04 16 46 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 49 H 0.15 2.11 5.53 -52.49 -0.29 1.82 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -29.73 399.68 -8.74 -38.47 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.34 Total: 2.45 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.78 Total: -4.19 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.96 Total: -49.01 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.69 Total: 15.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.73 -8.74 -38.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728901572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.163 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds