Wall clock time and date at job start Wed Apr 1 2020 04:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47034 * 120.00650 * 2 1 3 5 5 C 1.53001 * 109.47315 * 64.99512 * 4 2 1 6 6 N 1.46899 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.46908 * 111.00060 * 66.04771 * 6 5 4 8 8 C 1.50696 * 109.47499 * 199.13133 * 7 6 5 9 9 H 1.08005 * 119.99420 * 355.09180 * 8 7 6 10 10 C 1.37872 * 120.00402 * 175.09099 * 8 7 6 11 11 N 1.31514 * 120.00251 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99737 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47164 * 89.99718 * 12 10 8 14 14 H 1.48496 * 109.47012 * 209.99769 * 12 10 8 15 15 H 1.48499 * 109.47140 * 329.99600 * 12 10 8 16 16 C 1.46896 * 111.00023 * 189.99872 * 6 5 4 17 17 N 1.46505 * 109.47002 * 84.39108 * 16 6 5 18 18 N 1.40019 * 126.26248 * 75.19078 * 17 16 6 19 19 N 1.23646 * 109.31973 * 180.02562 * 18 17 16 20 20 N 1.40031 * 109.31520 * 0.02562 * 19 18 17 21 21 C 1.40139 * 126.25811 * 180.02562 * 20 19 18 22 22 C 1.38847 * 120.06885 * 0.02562 * 21 20 19 23 23 C 1.38112 * 119.93335 * 179.97438 * 22 21 20 24 24 C 1.38282 * 120.06667 * 359.97438 * 23 22 21 25 25 C 1.38286 * 120.13489 * 0.02562 * 24 23 22 26 26 C 1.38110 * 120.07130 * 359.97438 * 25 24 23 27 27 C 1.35046 * 107.47840 * 0.25853 * 20 19 18 28 28 O 1.21815 * 126.79768 * 179.74323 * 27 20 19 29 29 H 1.08995 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47015 * 299.99911 * 1 2 3 31 31 H 1.08999 * 109.46826 * 59.99757 * 1 2 3 32 32 H 1.09005 * 109.47032 * 240.00362 * 2 1 3 33 33 H 1.08999 * 109.46878 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46844 * 299.99987 * 3 2 1 35 35 H 1.08997 * 109.46832 * 60.00517 * 3 2 1 36 36 H 1.09000 * 109.46723 * 304.99524 * 4 2 1 37 37 H 1.08997 * 109.47159 * 185.00072 * 4 2 1 38 38 H 1.08998 * 109.46713 * 60.00424 * 5 4 2 39 39 H 1.08991 * 109.47023 * 300.00375 * 5 4 2 40 40 H 1.09001 * 109.47042 * 319.13336 * 7 6 5 41 41 H 1.08995 * 109.46831 * 79.12968 * 7 6 5 42 42 H 0.97005 * 119.99809 * 180.02562 * 11 10 8 43 43 H 1.08999 * 109.47226 * 324.38735 * 16 6 5 44 44 H 1.08998 * 109.47480 * 204.38719 * 16 6 5 45 45 H 1.08001 * 120.03342 * 359.70428 * 22 21 20 46 46 H 1.07997 * 119.96704 * 179.97438 * 23 22 21 47 47 H 1.07999 * 119.93313 * 179.97438 * 24 23 22 48 48 H 1.08003 * 119.96093 * 180.02562 * 25 24 23 49 49 H 1.07997 * 120.03932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6351 -2.1956 1.1878 6 7 2.1253 -2.8883 2.3869 7 6 1.4523 -2.3910 3.5943 8 6 2.2691 -2.7500 4.8088 9 1 3.1535 -3.3609 4.7034 10 6 1.8875 -2.2986 6.0544 11 7 2.6006 -2.6115 7.1142 12 14 0.3574 -1.2425 6.2367 13 1 -0.8221 -2.1152 6.4654 14 1 0.5248 -0.3238 7.3912 15 1 0.1532 -0.4489 4.9982 16 6 1.9660 -4.3428 2.2567 17 7 3.1108 -4.8962 1.5290 18 7 4.4015 -5.0870 2.0372 19 7 5.1205 -5.5723 1.1561 20 7 4.3685 -5.7445 -0.0126 21 6 4.8323 -6.2681 -1.2270 22 6 6.1542 -6.6746 -1.3497 23 6 6.6082 -7.1908 -2.5476 24 6 5.7474 -7.3034 -3.6240 25 6 4.4303 -6.8994 -3.5049 26 6 3.9703 -6.3825 -2.3096 27 6 3.1161 -5.3089 0.2431 28 8 2.1762 -5.2943 -0.5317 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6054 -0.2619 2.1369 37 1 3.1263 -0.6445 1.2951 38 1 2.0698 -2.6550 0.3001 39 1 0.5489 -2.2724 1.1419 40 1 1.3495 -1.3075 3.5329 41 1 0.4649 -2.8457 3.6732 42 1 2.3318 -2.2941 7.9905 43 1 1.0484 -4.5603 1.7102 44 1 1.9138 -4.7928 3.2481 45 1 6.8280 -6.5832 -0.5105 46 1 7.6364 -7.5067 -2.6438 47 1 6.1048 -7.7069 -4.5598 48 1 3.7603 -6.9890 -4.3472 49 1 2.9415 -6.0675 -2.2170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728901572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:02 Heat of formation + Delta-G solvation = 98.398764 kcal Electronic energy + Delta-G solvation = -30627.837464 eV Core-core repulsion = 26592.861804 eV Total energy + Delta-G solvation = -4034.975660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.23946 -40.32081 -39.63999 -39.11993 -37.09200 -35.88924 -34.70095 -34.00099 -31.99407 -30.99016 -30.75340 -29.52516 -28.05128 -26.81043 -25.62902 -24.44636 -24.35730 -23.00996 -22.69023 -21.86827 -20.79063 -19.73171 -18.99510 -18.58015 -18.02938 -17.58571 -17.35131 -16.76899 -16.32502 -16.27701 -15.85034 -15.71130 -15.25211 -14.92430 -14.79982 -14.75351 -14.62972 -14.57083 -14.42510 -14.20115 -14.11800 -13.91242 -13.72514 -13.44779 -13.09860 -12.77882 -12.71833 -12.65261 -12.58554 -12.42327 -12.30339 -11.98337 -11.83321 -11.70542 -11.60949 -11.47610 -11.44188 -11.37106 -10.85914 -10.73636 -10.00607 -9.40644 -9.34605 -8.23414 -6.27226 -0.27930 -0.16037 0.34189 0.35081 1.15010 1.37730 1.39838 1.48617 1.62226 2.36860 2.64867 2.77824 2.97209 3.12207 3.56631 3.81060 3.88160 3.93617 3.96546 4.02797 4.06690 4.17975 4.22818 4.28464 4.31436 4.44143 4.47570 4.53496 4.57864 4.62510 4.73635 4.77089 4.82996 4.89824 4.95328 4.99371 5.06157 5.10223 5.11438 5.13040 5.26222 5.35222 5.43196 5.44042 5.46758 5.52995 5.56117 5.88395 5.94459 6.04825 6.33687 6.50982 6.58304 6.81519 7.35496 8.92908 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.003241 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.378164 B = 8637.952676 C =10434.761517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.106 4.106 5 C 0.060 3.940 6 N -0.554 5.554 7 C 0.177 3.823 8 C -0.514 4.514 9 H 0.042 0.958 10 C 0.014 3.986 11 N -0.945 5.945 12 Si 0.938 3.062 13 H -0.266 1.266 14 H -0.288 1.288 15 H -0.244 1.244 16 C 0.318 3.682 17 N -0.446 5.446 18 N 0.041 4.959 19 N 0.015 4.985 20 N -0.418 5.418 21 C 0.137 3.863 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.119 4.119 25 C -0.093 4.093 26 C -0.154 4.154 27 C 0.641 3.359 28 O -0.538 6.538 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.004 0.996 42 H 0.265 0.735 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.138 0.862 46 H 0.165 0.835 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -4.357 -23.228 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.067 4.067 6 N -0.280 5.280 7 C 0.051 3.949 8 C -0.552 4.552 9 H 0.060 0.940 10 C -0.184 4.184 11 N -0.586 5.586 12 Si 0.762 3.238 13 H -0.191 1.191 14 H -0.214 1.214 15 H -0.168 1.168 16 C 0.108 3.892 17 N -0.278 5.278 18 N 0.044 4.956 19 N 0.018 4.982 20 N -0.238 5.238 21 C 0.047 3.953 22 C -0.154 4.154 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.112 4.112 26 C -0.175 4.175 27 C 0.339 3.661 28 O -0.410 6.410 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.128 0.872 45 H 0.156 0.844 46 H 0.182 0.818 47 H 0.182 0.818 48 H 0.174 0.826 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.328 -4.176 -22.708 23.206 hybrid contribution -1.709 0.332 0.683 1.870 sum 0.619 -3.843 -22.025 22.366 Atomic orbital electron populations 1.21876 0.94502 1.01777 1.02205 1.21067 0.96550 0.96596 0.96851 1.21798 1.00797 0.95157 1.02250 1.21626 1.00589 0.93605 0.98553 1.22216 0.98031 0.95223 0.91230 1.61324 1.59839 1.02769 1.04051 1.20028 0.92182 0.96485 0.86249 1.21222 1.11061 1.32138 0.90784 0.93956 1.25745 0.99960 0.97347 0.95333 1.70054 1.41341 1.47678 0.99524 0.85858 0.79776 0.79438 0.78744 1.19099 1.21362 1.16786 1.22131 0.81415 0.88359 0.97255 1.50770 1.08940 1.57471 1.10623 1.79839 0.89753 1.07594 1.18383 1.79734 1.17689 1.11973 0.88771 1.47499 1.08777 1.56754 1.10787 1.17873 0.95664 1.00909 0.80901 1.21104 0.92427 1.01065 1.00825 1.21434 1.01694 0.96885 0.90903 1.21710 0.92898 0.98893 1.00246 1.21364 0.97173 0.96528 0.96088 1.21425 1.00678 1.02754 0.92661 1.17028 0.84132 0.81444 0.83454 1.91013 1.37149 1.62204 1.50594 0.92979 0.92887 0.91259 0.91502 0.93081 0.91156 0.92861 0.92287 0.93045 0.92692 0.93397 0.93500 0.97804 0.92557 0.88071 0.87168 0.84373 0.81780 0.81814 0.82585 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.95 71.98 0.64 -2.59 16 2 C -0.09 -2.25 2.92 -10.79 -0.03 -2.28 16 3 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 4 C -0.11 -3.33 4.65 30.59 0.14 -3.18 16 5 C 0.06 2.02 4.55 86.30 0.39 2.41 16 6 N -0.55 -22.00 4.53 -913.18 -4.13 -26.14 16 7 C 0.18 7.79 3.64 85.55 0.31 8.10 16 8 C -0.51 -28.10 9.05 25.60 0.23 -27.87 16 9 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 10 C 0.01 0.78 5.47 84.65 0.46 1.24 16 11 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 12 Si 0.94 41.87 27.57 68.60 1.89 43.76 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.24 -9.95 6.40 99.48 0.64 -9.31 16 16 C 0.32 11.76 6.08 170.81 1.04 12.80 16 17 N -0.45 -16.51 3.86 -487.25 -1.88 -18.39 16 18 N 0.04 1.57 13.55 37.02 0.50 2.07 16 19 N 0.01 0.50 12.86 37.02 0.48 0.98 16 20 N -0.42 -13.54 3.80 -316.25 -1.20 -14.74 16 21 C 0.14 3.69 6.69 38.11 0.25 3.95 16 22 C -0.13 -2.81 9.67 22.39 0.22 -2.60 16 23 C -0.09 -1.27 10.04 22.25 0.22 -1.05 16 24 C -0.12 -1.46 10.04 22.29 0.22 -1.24 16 25 C -0.09 -1.51 10.04 22.25 0.22 -1.29 16 26 C -0.15 -3.75 9.40 22.39 0.21 -3.54 16 27 C 0.64 22.79 8.42 178.88 1.51 24.29 16 28 O -0.54 -19.73 15.04 -4.72 -0.07 -19.80 16 29 H 0.05 1.19 6.57 -2.39 -0.02 1.17 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.99 6.25 -2.39 -0.01 1.98 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.89 7.87 -2.39 -0.02 1.87 16 39 H 0.05 1.48 6.54 -2.39 -0.02 1.46 16 40 H 0.05 2.06 4.60 -2.39 -0.01 2.05 16 41 H 0.00 0.18 7.68 -2.39 -0.02 0.16 16 42 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 43 H 0.10 3.30 7.62 -2.39 -0.02 3.28 16 44 H 0.11 4.37 7.20 -2.39 -0.02 4.36 16 45 H 0.14 2.82 7.71 -2.91 -0.02 2.79 16 46 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 48 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.13 3.75 5.53 -2.91 -0.02 3.73 16 Total: -1.00 -67.80 399.68 3.47 -64.33 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.88 Total: 20.64 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.71 Total: 4.71 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.94 Total: -113.65 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.07 Total: -19.80 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.89 Total: 43.76 kcal Total: -67.80 3.47 -64.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728901572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.725 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds