Wall clock time and date at job start Wed Apr 1 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32165 * 120.53668 * 2 1 4 4 C 1.31851 * 120.97067 * 180.02562 * 3 2 1 5 5 N 1.31884 * 122.09178 * 359.97438 * 4 3 2 6 6 C 1.32126 * 120.96900 * 359.76351 * 5 4 3 7 7 C 1.39927 * 120.53991 * 180.02562 * 2 1 3 8 8 C 1.47829 * 120.93837 * 359.95882 * 7 2 1 9 9 O 1.21555 * 119.99604 * 318.64992 * 8 7 2 10 10 N 1.34775 * 120.00191 * 138.92780 * 8 7 2 11 11 C 1.47026 * 125.64827 * 354.01860 * 10 8 7 12 12 C 1.54309 * 107.27633 * 180.96694 * 11 10 8 13 13 C 1.55156 * 102.86427 * 22.52496 * 12 11 10 14 14 H 1.08999 * 111.03690 * 82.38872 * 13 12 11 15 15 N 1.46897 * 111.00705 * 206.22723 * 13 12 11 16 16 C 1.46898 * 111.00065 * 297.95734 * 15 13 12 17 17 C 1.53240 * 109.34301 * 172.74413 * 16 15 13 18 18 N 1.47081 * 108.52090 * 53.82356 * 17 16 15 19 19 C 1.36942 * 120.88037 * 128.79590 * 18 17 16 20 20 H 1.08005 * 119.99867 * 208.03928 * 19 18 17 21 21 C 1.38805 * 120.00158 * 28.03850 * 19 18 17 22 22 N 1.31623 * 119.99871 * 16.41974 * 21 19 18 23 23 Si 1.86798 * 120.00197 * 196.42321 * 21 19 18 24 24 H 1.48497 * 109.46945 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47369 * 119.99765 * 23 21 19 26 26 H 1.48494 * 109.46982 * 239.99951 * 23 21 19 27 27 C 1.47082 * 118.23890 * 308.82078 * 18 17 16 28 28 C 1.46898 * 111.00427 * 173.64635 * 15 13 12 29 29 C 1.47422 * 125.65119 * 174.32121 * 10 8 7 30 30 H 1.09004 * 109.47092 * 264.47848 * 1 2 3 31 31 H 1.09001 * 109.47409 * 24.47690 * 1 2 3 32 32 H 1.08996 * 109.47188 * 144.47723 * 1 2 3 33 33 H 1.08001 * 118.95312 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.54445 * 180.24568 * 6 5 4 35 35 H 1.08999 * 109.87709 * 300.51514 * 11 10 8 36 36 H 1.09000 * 109.87889 * 61.67526 * 11 10 8 37 37 H 1.08993 * 110.92655 * 264.11074 * 12 11 10 38 38 H 1.09002 * 110.58829 * 140.78334 * 12 11 10 39 39 H 1.09007 * 109.48860 * 292.70235 * 16 15 13 40 40 H 1.08992 * 109.49743 * 52.78107 * 16 15 13 41 41 H 1.08999 * 109.62623 * 294.11561 * 17 16 15 42 42 H 1.09002 * 109.63149 * 173.53400 * 17 16 15 43 43 H 0.97001 * 120.00069 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.62348 * 291.46944 * 27 18 17 45 45 H 1.09001 * 109.62575 * 170.89471 * 27 18 17 46 46 H 1.08998 * 109.49546 * 307.21686 * 28 15 13 47 47 H 1.09007 * 109.48711 * 67.26933 * 28 15 13 48 48 H 1.08991 * 110.36918 * 274.67599 * 29 10 8 49 49 H 1.09008 * 110.36205 * 36.88760 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2061 0.0364 -0.0005 6 6 3.6165 -1.1460 0.0046 7 6 2.2180 -1.2052 -0.0005 8 6 1.5121 -2.5040 -0.0002 9 8 0.5280 -2.6607 0.6959 10 7 1.9630 -3.5162 -0.7674 11 6 3.0624 -3.4304 -1.7399 12 6 3.2052 -4.8207 -2.3939 13 6 1.8066 -5.4537 -2.1688 14 1 1.0994 -5.1201 -2.9281 15 7 1.8908 -6.9200 -2.1397 16 6 2.3784 -7.4449 -3.4221 17 6 2.6240 -8.9520 -3.2932 18 7 1.3953 -9.5841 -2.7893 19 6 0.8480 -10.6649 -3.4279 20 1 -0.2153 -10.8451 -3.3696 21 6 1.6597 -11.5287 -4.1500 22 7 2.9632 -11.5135 -3.9678 23 14 0.9024 -12.7126 -5.3805 24 1 -0.5716 -12.5329 -5.3975 25 1 1.4505 -12.4385 -6.7332 26 1 1.2260 -14.1078 -4.9887 27 6 0.7696 -9.0244 -1.5815 28 6 0.5971 -7.5145 -1.7778 29 6 1.4314 -4.8913 -0.7751 30 1 -0.3633 -0.0989 1.0229 31 1 -0.3634 0.9353 -0.4258 32 1 -0.3633 -0.8364 -0.5971 33 1 4.0126 2.0973 -0.0009 34 1 4.2039 -2.0523 0.0086 35 1 2.8284 -2.6838 -2.4988 36 1 3.9886 -3.1659 -1.2297 37 1 3.9783 -5.4070 -1.8973 38 1 3.4177 -4.7235 -3.4586 39 1 1.6334 -7.2627 -4.1966 40 1 3.3102 -6.9461 -3.6886 41 1 3.4411 -9.1314 -2.5946 42 1 2.8753 -9.3669 -4.2694 43 1 3.5306 -12.1169 -4.4728 44 1 1.4086 -9.2109 -0.7183 45 1 -0.2049 -9.4872 -1.4260 46 1 0.2371 -7.0662 -0.8518 47 1 -0.1232 -7.3309 -2.5750 48 1 1.8993 -5.4833 0.0114 49 1 0.3489 -4.8801 -0.6475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051987117.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:35 Heat of formation + Delta-G solvation = 62.143086 kcal Electronic energy + Delta-G solvation = -30437.183052 eV Core-core repulsion = 26400.635228 eV Total energy + Delta-G solvation = -4036.547824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.76236 -40.13354 -38.56743 -36.96451 -34.90300 -34.28095 -33.17729 -31.72711 -30.49216 -30.24597 -29.26387 -28.37965 -26.34271 -25.48004 -23.75136 -23.43633 -22.86323 -22.23877 -20.56222 -20.02711 -19.20708 -18.43455 -17.68779 -17.30038 -17.08458 -16.26214 -16.02646 -15.45064 -14.98925 -14.74257 -14.57770 -14.33441 -14.12289 -13.88455 -13.57050 -13.53107 -13.39244 -13.38386 -13.27679 -13.05292 -12.79050 -12.57034 -12.40101 -12.03173 -11.94224 -11.37331 -11.29292 -11.10694 -11.07922 -10.94135 -10.78679 -10.47148 -10.34386 -10.27988 -10.09100 -10.00209 -9.78917 -9.77785 -9.63447 -8.95146 -8.55031 -7.97569 -6.68894 -5.81990 -3.24307 0.05920 0.53323 2.29060 2.52492 3.25450 3.34311 3.42588 3.44555 3.52444 3.61268 3.86239 3.94858 4.12615 4.35148 4.46532 4.48172 4.53000 4.80392 4.83829 4.94388 5.10931 5.19033 5.22386 5.27760 5.33088 5.36109 5.39958 5.57590 5.60313 5.71703 5.74854 5.79816 5.85737 5.86444 5.90585 6.07741 6.09570 6.17795 6.27136 6.40175 6.47716 6.63102 6.88522 7.09382 7.17631 7.48142 7.52484 7.56348 7.62926 7.71170 7.77928 8.40558 9.17918 9.80730 10.39591 11.26946 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.002077 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.006070 B =13480.467956 C =13995.807351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.229 3.771 3 N -0.523 5.523 4 C 0.314 3.686 5 N -0.525 5.525 6 C 0.183 3.817 7 C -0.236 4.236 8 C 0.585 3.415 9 O -0.523 6.523 10 N -0.610 5.610 11 C 0.096 3.904 12 C -0.123 4.123 13 C 0.069 3.931 14 H 0.051 0.949 15 N -0.520 5.520 16 C 0.036 3.964 17 C 0.179 3.821 18 N -0.595 5.595 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.116 3.884 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.202 0.798 34 H 0.177 0.823 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.025 0.975 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.029 0.971 48 H 0.085 0.915 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 23.732 5.411 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 N -0.238 5.238 4 C 0.028 3.972 5 N -0.239 5.239 6 C 0.017 3.983 7 C -0.243 4.243 8 C 0.372 3.628 9 O -0.399 6.399 10 N -0.344 5.344 11 C -0.027 4.027 12 C -0.161 4.161 13 C -0.041 4.041 14 H 0.069 0.931 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.006 4.006 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.219 0.781 34 H 0.193 0.807 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.103 0.897 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.645 24.321 6.103 25.129 hybrid contribution -1.062 -1.149 -1.338 2.059 sum 0.582 23.172 4.765 23.664 Atomic orbital electron populations 1.20881 0.86790 1.04009 1.04785 1.21906 0.97984 0.86532 0.85370 1.68407 1.10366 1.29501 1.15489 1.25239 0.86705 0.97351 0.87952 1.68497 1.41362 0.98899 1.15100 1.23672 0.90711 0.96850 0.87069 1.21575 0.96539 0.95900 1.10331 1.17361 0.83545 0.82136 0.79798 1.90824 1.25399 1.82193 1.41530 1.48324 1.35441 1.10760 1.39838 1.22295 0.89707 0.99295 0.91403 1.22711 0.98361 0.93541 1.01469 1.22743 0.96067 0.90152 0.95153 0.93074 1.62024 1.28104 1.01661 1.32769 1.22922 0.98078 1.00270 0.87999 1.20840 0.88194 0.85349 1.00295 1.44120 1.28272 1.33187 1.26295 1.19217 0.91410 1.01462 1.26059 0.91675 1.25059 0.95592 0.97473 1.01543 1.70033 1.02988 1.39654 1.42034 0.86234 0.78665 0.80695 0.81246 1.20305 1.21578 1.21688 1.20977 0.96945 0.89517 0.90338 1.22683 0.88921 0.98363 0.98831 1.22315 0.99889 0.80195 0.98172 0.88464 0.89818 0.89695 0.78136 0.80660 0.91349 0.90987 0.88764 0.89879 0.95620 0.91862 0.95448 0.89537 0.93661 0.95570 0.92544 0.91825 0.95264 0.89662 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.00 36.01 0.32 -0.60 16 2 C 0.23 2.27 6.86 -81.82 -0.56 1.71 16 3 N -0.52 -5.00 10.36 -10.48 -0.11 -5.11 16 4 C 0.31 2.54 12.27 -92.03 -1.13 1.41 16 5 N -0.52 -4.71 10.42 -14.24 -0.15 -4.86 16 6 C 0.18 1.60 9.77 -16.78 -0.16 1.43 16 7 C -0.24 -2.36 5.46 -104.69 -0.57 -2.94 16 8 C 0.58 6.82 6.83 -12.34 -0.08 6.73 16 9 O -0.52 -7.58 15.62 5.32 0.08 -7.49 16 10 N -0.61 -6.47 3.33 -171.65 -0.57 -7.04 16 11 C 0.10 0.79 5.87 -3.07 -0.02 0.78 16 12 C -0.12 -1.19 5.34 -24.90 -0.13 -1.33 16 13 C 0.07 0.85 2.71 -65.57 -0.18 0.67 16 14 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 15 N -0.52 -8.24 4.53 -223.79 -1.01 -9.25 16 16 C 0.04 0.64 5.48 -3.70 -0.02 0.62 16 17 C 0.18 4.11 5.40 -3.60 -0.02 4.09 16 18 N -0.60 -14.61 3.03 -172.01 -0.52 -15.13 16 19 C -0.25 -6.79 9.62 -15.06 -0.14 -6.94 16 20 H 0.07 1.74 7.88 -52.48 -0.41 1.32 16 21 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 22 N -0.90 -25.70 11.22 55.49 0.62 -25.07 16 23 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 28 C 0.04 0.69 5.48 -3.70 -0.02 0.67 16 29 C 0.12 1.38 5.34 -2.53 -0.01 1.37 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.78 7.01 -51.93 -0.36 0.41 16 33 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.18 1.18 5.91 -52.48 -0.31 0.87 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.47 5.59 -51.93 -0.29 0.18 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.98 6.87 -51.93 -0.36 0.62 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 2.22 6.21 -51.93 -0.32 1.89 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 46 H 0.06 0.93 6.79 -51.93 -0.35 0.57 16 47 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.08 1.01 7.69 -51.92 -0.40 0.61 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -31.77 384.13 -11.16 -42.93 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.42 Total: -1.77 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.84 Total: 10.69 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -1.74 Total: -66.47 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.77 -11.16 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051987117.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.074 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds