Wall clock time and date at job start Wed Apr 1 2020 03:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32165 * 120.53668 * 2 1 4 4 C 1.31851 * 120.97067 * 180.02562 * 3 2 1 5 5 N 1.31884 * 122.09178 * 359.97438 * 4 3 2 6 6 C 1.32126 * 120.96900 * 359.76351 * 5 4 3 7 7 C 1.39927 * 120.53991 * 180.02562 * 2 1 3 8 8 C 1.47829 * 120.93837 * 359.95882 * 7 2 1 9 9 O 1.21555 * 119.99604 * 318.64992 * 8 7 2 10 10 N 1.34775 * 120.00191 * 138.92780 * 8 7 2 11 11 C 1.47026 * 125.64827 * 354.01860 * 10 8 7 12 12 C 1.54309 * 107.27633 * 180.96694 * 11 10 8 13 13 C 1.55156 * 102.86427 * 22.52496 * 12 11 10 14 14 H 1.08999 * 111.03690 * 82.38872 * 13 12 11 15 15 N 1.46897 * 111.00705 * 206.22723 * 13 12 11 16 16 C 1.46898 * 111.00065 * 297.95734 * 15 13 12 17 17 C 1.53240 * 109.34301 * 172.74413 * 16 15 13 18 18 N 1.47081 * 108.52090 * 53.82356 * 17 16 15 19 19 C 1.36942 * 120.88037 * 128.79590 * 18 17 16 20 20 H 1.08005 * 119.99867 * 208.03928 * 19 18 17 21 21 C 1.38805 * 120.00158 * 28.03850 * 19 18 17 22 22 N 1.31623 * 119.99871 * 16.41974 * 21 19 18 23 23 Si 1.86798 * 120.00197 * 196.42321 * 21 19 18 24 24 H 1.48497 * 109.46945 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47369 * 119.99765 * 23 21 19 26 26 H 1.48494 * 109.46982 * 239.99951 * 23 21 19 27 27 C 1.47082 * 118.23890 * 308.82078 * 18 17 16 28 28 C 1.46898 * 111.00427 * 173.64635 * 15 13 12 29 29 C 1.47422 * 125.65119 * 174.32121 * 10 8 7 30 30 H 1.09004 * 109.47092 * 264.47848 * 1 2 3 31 31 H 1.09001 * 109.47409 * 24.47690 * 1 2 3 32 32 H 1.08996 * 109.47188 * 144.47723 * 1 2 3 33 33 H 1.08001 * 118.95312 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.54445 * 180.24568 * 6 5 4 35 35 H 1.08999 * 109.87709 * 300.51514 * 11 10 8 36 36 H 1.09000 * 109.87889 * 61.67526 * 11 10 8 37 37 H 1.08993 * 110.92655 * 264.11074 * 12 11 10 38 38 H 1.09002 * 110.58829 * 140.78334 * 12 11 10 39 39 H 1.09007 * 109.48860 * 292.70235 * 16 15 13 40 40 H 1.08992 * 109.49743 * 52.78107 * 16 15 13 41 41 H 1.08999 * 109.62623 * 294.11561 * 17 16 15 42 42 H 1.09002 * 109.63149 * 173.53400 * 17 16 15 43 43 H 0.97001 * 120.00069 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.62348 * 291.46944 * 27 18 17 45 45 H 1.09001 * 109.62575 * 170.89471 * 27 18 17 46 46 H 1.08998 * 109.49546 * 307.21686 * 28 15 13 47 47 H 1.09007 * 109.48711 * 67.26933 * 28 15 13 48 48 H 1.08991 * 110.36918 * 274.67599 * 29 10 8 49 49 H 1.09008 * 110.36205 * 36.88760 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2061 0.0364 -0.0005 6 6 3.6165 -1.1460 0.0046 7 6 2.2180 -1.2052 -0.0005 8 6 1.5121 -2.5040 -0.0002 9 8 0.5280 -2.6607 0.6959 10 7 1.9630 -3.5162 -0.7674 11 6 3.0624 -3.4304 -1.7399 12 6 3.2052 -4.8207 -2.3939 13 6 1.8066 -5.4537 -2.1688 14 1 1.0994 -5.1201 -2.9281 15 7 1.8908 -6.9200 -2.1397 16 6 2.3784 -7.4449 -3.4221 17 6 2.6240 -8.9520 -3.2932 18 7 1.3953 -9.5841 -2.7893 19 6 0.8480 -10.6649 -3.4279 20 1 -0.2153 -10.8451 -3.3696 21 6 1.6597 -11.5287 -4.1500 22 7 2.9632 -11.5135 -3.9678 23 14 0.9024 -12.7126 -5.3805 24 1 -0.5716 -12.5329 -5.3975 25 1 1.4505 -12.4385 -6.7332 26 1 1.2260 -14.1078 -4.9887 27 6 0.7696 -9.0244 -1.5815 28 6 0.5971 -7.5145 -1.7778 29 6 1.4314 -4.8913 -0.7751 30 1 -0.3633 -0.0989 1.0229 31 1 -0.3634 0.9353 -0.4258 32 1 -0.3633 -0.8364 -0.5971 33 1 4.0126 2.0973 -0.0009 34 1 4.2039 -2.0523 0.0086 35 1 2.8284 -2.6838 -2.4988 36 1 3.9886 -3.1659 -1.2297 37 1 3.9783 -5.4070 -1.8973 38 1 3.4177 -4.7235 -3.4586 39 1 1.6334 -7.2627 -4.1966 40 1 3.3102 -6.9461 -3.6886 41 1 3.4411 -9.1314 -2.5946 42 1 2.8753 -9.3669 -4.2694 43 1 3.5306 -12.1169 -4.4728 44 1 1.4086 -9.2109 -0.7183 45 1 -0.2049 -9.4872 -1.4260 46 1 0.2371 -7.0662 -0.8518 47 1 -0.1232 -7.3309 -2.5750 48 1 1.8993 -5.4833 0.0114 49 1 0.3489 -4.8801 -0.6475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051987117.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:34 Heat of formation + Delta-G solvation = 41.496078 kcal Electronic energy + Delta-G solvation = -30438.078373 eV Core-core repulsion = 26400.635228 eV Total energy + Delta-G solvation = -4037.443145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.46875 -41.03285 -39.77142 -38.19580 -35.93695 -35.47675 -34.02682 -33.27929 -31.83845 -31.60798 -30.11248 -29.40762 -27.78632 -26.44843 -24.97827 -24.53567 -24.02155 -23.51731 -21.65833 -20.90455 -20.78816 -19.17333 -18.76725 -18.49330 -17.91056 -17.47653 -16.98375 -16.73965 -16.20400 -15.85119 -15.70764 -15.51188 -15.29168 -15.23454 -15.08704 -14.83350 -14.47303 -14.24423 -14.07329 -14.04684 -13.93612 -13.57000 -13.32799 -13.24931 -12.99185 -12.79815 -12.69824 -12.59273 -12.50506 -12.16307 -12.00853 -11.89328 -11.82643 -11.70570 -11.44021 -11.36605 -11.12331 -10.73466 -10.59194 -10.45410 -9.80027 -9.32112 -8.65867 -7.87782 -5.33205 -0.62076 -0.14324 1.44706 1.45659 1.47718 1.57926 1.67630 2.50523 2.58479 2.89502 2.92228 3.03159 3.18600 3.21243 3.27893 3.54845 3.61547 3.70121 3.78081 4.05667 4.16150 4.23815 4.24345 4.33188 4.34326 4.37740 4.53925 4.56766 4.59196 4.62878 4.68315 4.69850 4.74610 4.87221 4.89851 4.93951 4.99211 5.01327 5.11024 5.20698 5.22573 5.23547 5.38101 5.62520 5.71105 5.73598 6.12364 6.23295 6.28890 6.38758 6.83632 6.88565 7.14632 7.84601 8.38675 9.18946 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.002077 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.006070 B =13480.467956 C =13995.807351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.220 3.780 3 N -0.536 5.536 4 C 0.316 3.684 5 N -0.534 5.534 6 C 0.191 3.809 7 C -0.248 4.248 8 C 0.587 3.413 9 O -0.559 6.559 10 N -0.607 5.607 11 C 0.098 3.902 12 C -0.117 4.117 13 C 0.070 3.930 14 H 0.052 0.948 15 N -0.525 5.525 16 C 0.055 3.945 17 C 0.186 3.814 18 N -0.615 5.615 19 C -0.263 4.263 20 H 0.064 0.936 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.145 3.855 28 C 0.054 3.946 29 C 0.122 3.878 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.195 0.805 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.018 0.982 40 H 0.091 0.909 41 H 0.002 0.998 42 H 0.054 0.946 43 H 0.251 0.749 44 H 0.017 0.983 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.023 0.977 48 H 0.079 0.921 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 25.967 5.084 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.073 3.927 3 N -0.250 5.250 4 C 0.031 3.969 5 N -0.248 5.248 6 C 0.024 3.976 7 C -0.255 4.255 8 C 0.375 3.625 9 O -0.438 6.438 10 N -0.340 5.340 11 C -0.024 4.024 12 C -0.155 4.155 13 C -0.039 4.039 14 H 0.070 0.930 15 N -0.250 5.250 16 C -0.074 4.074 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.393 4.393 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.215 1.215 26 H -0.220 1.220 27 C 0.019 3.981 28 C -0.075 4.075 29 C -0.001 4.001 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.212 0.788 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.037 0.963 40 H 0.110 0.890 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.041 0.959 48 H 0.097 0.903 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.149 26.591 5.777 27.296 hybrid contribution -1.200 -1.801 -1.159 2.455 sum 0.949 24.790 4.618 25.234 Atomic orbital electron populations 1.20849 0.86440 1.04315 1.04494 1.22106 0.98524 0.86833 0.85190 1.68479 1.11121 1.29226 1.16218 1.25947 0.86390 0.98432 0.86180 1.68601 1.41410 0.99154 1.15611 1.23954 0.90205 0.97600 0.85825 1.21441 0.97092 0.94936 1.12065 1.17570 0.83091 0.82639 0.79200 1.90804 1.27071 1.82841 1.43079 1.48325 1.35773 1.09958 1.39952 1.22437 0.89894 0.98703 0.91338 1.22715 0.96262 0.93893 1.02623 1.22740 0.98140 0.87518 0.95485 0.93033 1.61923 1.27520 1.04029 1.31521 1.22572 0.99348 0.96772 0.88729 1.20626 0.87067 0.88663 0.97667 1.44414 1.28695 1.33139 1.27676 1.19511 0.91551 1.02083 1.26152 0.91833 1.25791 0.96026 0.99354 1.03334 1.70179 1.04124 1.40602 1.43008 0.85228 0.78251 0.78265 0.78811 1.19343 1.21460 1.21973 1.21106 0.96343 0.92050 0.88605 1.22470 0.89386 0.95767 0.99897 1.22135 0.99346 0.81020 0.97590 0.88814 0.88489 0.90561 0.74907 0.78807 0.89988 0.88622 0.88994 0.88423 0.96342 0.89035 0.98031 0.92722 0.94032 0.96460 0.92481 0.89268 0.95880 0.90265 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.00 71.24 0.64 -1.07 16 2 C 0.22 4.07 6.86 42.92 0.29 4.36 16 3 N -0.54 -9.18 10.36 -187.06 -1.94 -11.12 16 4 C 0.32 4.26 12.27 180.84 2.22 6.48 16 5 N -0.53 -8.09 10.42 -198.97 -2.07 -10.16 16 6 C 0.19 2.81 9.77 85.07 0.83 3.64 16 7 C -0.25 -4.53 5.46 -19.91 -0.11 -4.64 16 8 C 0.59 12.92 6.83 86.78 0.59 13.52 16 9 O -0.56 -16.01 15.62 -3.89 -0.06 -16.07 16 10 N -0.61 -11.64 3.33 -815.25 -2.71 -14.35 16 11 C 0.10 1.30 5.87 86.72 0.51 1.81 16 12 C -0.12 -1.91 5.34 31.78 0.17 -1.74 16 13 C 0.07 1.59 2.71 46.31 0.13 1.72 16 14 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 15 N -0.52 -15.96 4.53 -861.93 -3.90 -19.86 16 16 C 0.05 1.90 5.48 86.38 0.47 2.38 16 17 C 0.19 8.71 5.40 86.35 0.47 9.17 16 18 N -0.62 -30.78 3.03 -698.12 -2.12 -32.89 16 19 C -0.26 -14.42 9.62 84.03 0.81 -13.61 16 20 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 21 C -0.05 -2.75 4.94 84.86 0.42 -2.33 16 22 N -0.93 -54.56 11.22 21.65 0.24 -54.32 16 23 Si 0.97 44.51 29.58 68.60 2.03 46.54 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 C 0.14 5.98 6.69 86.35 0.58 6.56 16 28 C 0.05 1.77 5.48 86.38 0.47 2.24 16 29 C 0.12 2.71 5.34 86.86 0.46 3.17 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.38 7.01 -2.39 -0.02 1.36 16 33 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.20 1.95 5.91 -2.91 -0.02 1.93 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.86 5.59 -2.39 -0.01 0.85 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.37 7.94 -2.39 -0.02 1.35 16 39 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.09 2.65 6.87 -2.39 -0.02 2.63 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.05 2.89 6.21 -2.39 -0.01 2.88 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 46 H 0.09 2.47 6.79 -2.39 -0.02 2.46 16 47 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.07 1.70 7.69 -2.38 -0.02 1.68 16 Total: -1.00 -70.29 384.13 -0.62 -70.90 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.96 Total: 9.68 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 8.96 Total: 31.66 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -12.50 Total: -142.71 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.06 Total: -16.07 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.29 -0.62 -70.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051987117.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.401 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds