Wall clock time and date at job start Wed Apr 1 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.64116 * 2 1 4 4 O 1.21280 * 119.99788 * 114.88674 * 3 2 1 5 5 N 1.34775 * 119.99568 * 294.88475 * 3 2 1 6 6 C 1.46503 * 119.99265 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46762 * 180.02562 * 6 5 3 8 8 C 1.35354 * 126.75054 * 95.00192 * 7 6 5 9 9 N 1.35314 * 106.17410 * 180.02562 * 8 7 6 10 10 C 1.46494 * 125.86847 * 179.97438 * 9 8 7 11 11 C 1.53498 * 114.20187 * 85.00187 * 10 9 8 12 12 N 1.47075 * 87.98673 * 220.14656 * 11 10 9 13 13 C 1.36933 * 136.06282 * 206.86290 * 12 11 10 14 14 H 1.08007 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00468 * 179.97438 * 13 12 11 16 16 N 1.31621 * 119.99479 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00405 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46995 * 90.00040 * 17 15 13 19 19 H 1.48494 * 109.47525 * 209.99860 * 17 15 13 20 20 H 1.48498 * 109.47211 * 330.00585 * 17 15 13 21 21 C 1.47070 * 87.87890 * 27.11988 * 12 11 10 22 22 N 1.28717 * 108.26190 * 0.26427 * 9 8 7 23 23 N 1.28631 * 110.17812 * 359.55623 * 22 9 8 24 24 C 1.53019 * 109.64510 * 120.42351 * 2 1 3 25 25 C 1.50065 * 110.15276 * 169.33129 * 24 2 1 26 26 C 1.29444 * 124.06970 * 342.86816 * 25 24 2 27 27 C 1.50063 * 124.07959 * 0.44446 * 26 25 24 28 28 C 1.53006 * 110.15312 * 342.90846 * 27 26 25 29 29 H 1.08998 * 109.47468 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46985 * 299.99950 * 1 2 3 32 32 H 0.96993 * 120.00504 * 359.97438 * 5 3 2 33 33 H 1.08997 * 109.47389 * 60.00022 * 6 5 3 34 34 H 1.09005 * 109.47112 * 299.99815 * 6 5 3 35 35 H 1.08000 * 126.91601 * 0.03661 * 8 7 6 36 36 H 1.08996 * 113.28547 * 218.06414 * 10 9 8 37 37 H 1.08997 * 113.46961 * 105.36996 * 11 10 9 38 38 H 1.08997 * 113.47174 * 334.92373 * 11 10 9 39 39 H 0.97003 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.09008 * 113.46685 * 87.66545 * 21 12 11 41 41 H 1.08994 * 113.46539 * 218.09534 * 21 12 11 42 42 H 1.09001 * 109.35701 * 289.54087 * 24 2 1 43 43 H 1.09003 * 109.35887 * 49.26097 * 24 2 1 44 44 H 1.07993 * 117.96437 * 162.88875 * 25 24 2 45 45 H 1.08006 * 117.95581 * 180.46556 * 26 25 24 46 46 H 1.09000 * 109.35364 * 103.09946 * 27 26 25 47 47 H 1.09003 * 109.35969 * 222.68063 * 27 26 25 48 48 H 1.08999 * 109.62722 * 289.72268 * 28 27 26 49 49 H 1.09002 * 109.64502 * 169.10144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.6566 1.8418 0.9528 5 7 1.8004 2.2190 -1.0589 6 6 2.2934 3.5986 -1.0590 7 6 1.8985 4.2729 -2.3477 8 6 0.8061 5.0445 -2.5563 9 7 0.8598 5.4314 -3.8519 10 6 -0.1176 6.2826 -4.5347 11 6 0.1258 7.7877 -4.3570 12 7 -1.3291 7.9541 -4.2201 13 6 -2.2331 8.9562 -4.4518 14 1 -1.8968 9.9094 -4.8324 15 6 -3.5815 8.7471 -4.1975 16 7 -3.9912 7.5856 -3.7332 17 14 -4.8146 10.1143 -4.5129 18 1 -5.3170 10.0159 -5.9069 19 1 -5.9515 9.9836 -3.5666 20 1 -4.1555 11.4304 -4.3161 21 6 -1.3849 6.5726 -3.7187 22 7 1.9140 4.9180 -4.3828 23 7 2.5582 4.2262 -3.5104 24 6 2.0444 -0.7298 1.2427 25 6 3.5221 -0.9655 1.1291 26 6 4.1844 -0.8956 0.0192 27 6 3.5689 -0.5597 -1.3075 28 6 2.0500 -0.7331 -1.2431 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3048 1.8810 -1.8210 33 1 3.3795 3.5964 -0.9677 34 1 1.8591 4.1397 -0.2183 35 1 0.0449 5.3001 -1.8341 36 1 -0.3084 5.9792 -5.5640 37 1 0.5360 8.2689 -5.2448 38 1 0.6780 8.0341 -3.4501 39 1 -4.9336 7.4393 -3.5558 40 1 -1.2351 6.4953 -2.6418 41 1 -2.2592 6.0207 -4.0638 42 1 1.8419 -0.1249 2.1266 43 1 1.5338 -1.6883 1.3361 44 1 4.0667 -1.2090 2.0294 45 1 5.2461 -1.0916 0.0498 46 1 3.8037 0.4735 -1.5635 47 1 3.9761 -1.2208 -2.0726 48 1 1.8052 -1.7929 -1.1726 49 1 1.5943 -0.3073 -2.1370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107173763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:04 Heat of formation + Delta-G solvation = 130.553367 kcal Electronic energy + Delta-G solvation = -30038.380573 eV Core-core repulsion = 26004.799241 eV Total energy + Delta-G solvation = -4033.581332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.10928 -40.86039 -38.61134 -37.59852 -35.25432 -33.56099 -33.17606 -32.04624 -31.36489 -30.77686 -28.06048 -26.98598 -26.83387 -25.10962 -24.50874 -23.38203 -23.10707 -21.99550 -21.10771 -20.08947 -19.73484 -18.56738 -17.40976 -16.84945 -16.50377 -16.39528 -15.90764 -15.55611 -15.36286 -15.14312 -14.78273 -14.42100 -14.20270 -14.10391 -13.80717 -13.39684 -13.19558 -13.04598 -12.91256 -12.70664 -12.48961 -12.33772 -12.22687 -12.17572 -12.12110 -11.86862 -11.75769 -11.40433 -11.24600 -11.01255 -10.90566 -10.67536 -10.52895 -10.41594 -10.30627 -9.93125 -9.81891 -9.51049 -9.21481 -9.15066 -9.07409 -9.01212 -7.30242 -6.08815 -3.44433 1.78375 2.20023 2.41479 2.59194 2.60879 3.23827 3.29366 3.31039 3.34405 4.19588 4.24580 4.32525 4.38843 4.42847 4.63515 4.79555 4.82152 4.90227 4.92649 5.05263 5.11723 5.12801 5.17257 5.20736 5.38104 5.38340 5.42340 5.45055 5.49503 5.55698 5.59315 5.65083 5.73272 5.82240 5.83384 5.91138 5.96943 6.04532 6.08818 6.12495 6.25574 6.30982 6.48649 6.49072 6.72492 6.82409 6.98935 7.10853 7.42040 7.63451 8.15840 8.70207 8.71389 9.37384 10.19034 11.08745 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002103 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.604761 B =13313.712872 C =14117.386453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C 0.529 3.471 4 O -0.535 6.535 5 N -0.723 5.723 6 C 0.215 3.785 7 C -0.062 4.062 8 C -0.016 4.016 9 N -0.262 5.262 10 C 0.072 3.928 11 C 0.117 3.883 12 N -0.595 5.595 13 C -0.227 4.227 14 H 0.089 0.911 15 C -0.001 4.001 16 N -0.918 5.918 17 Si 0.921 3.079 18 H -0.284 1.284 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.156 3.844 22 N -0.087 5.087 23 N -0.267 5.267 24 C -0.068 4.068 25 C -0.140 4.140 26 C -0.162 4.162 27 C -0.097 4.097 28 C -0.107 4.107 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.190 0.810 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.259 0.741 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 -17.367 6.499 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C 0.315 3.685 4 O -0.411 6.411 5 N -0.375 5.375 6 C 0.090 3.910 7 C -0.201 4.201 8 C -0.170 4.170 9 N -0.054 5.054 10 C -0.031 4.031 11 C -0.011 4.011 12 N -0.321 5.321 13 C -0.354 4.354 14 H 0.107 0.893 15 C -0.199 4.199 16 N -0.564 5.564 17 Si 0.750 3.250 18 H -0.211 1.211 19 H -0.213 1.213 20 H -0.204 1.204 21 C 0.029 3.971 22 N -0.067 5.067 23 N -0.133 5.133 24 C -0.105 4.105 25 C -0.158 4.158 26 C -0.181 4.181 27 C -0.134 4.134 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.236 0.764 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.207 0.793 36 H 0.153 0.847 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.589 -16.955 5.853 20.830 hybrid contribution -1.557 0.862 0.460 1.838 sum 9.032 -16.093 6.313 19.504 Atomic orbital electron populations 1.21848 0.92070 1.03052 1.02939 1.20914 0.97024 0.92340 0.98088 1.20338 0.79093 0.87035 0.82019 1.90691 1.40207 1.75686 1.34547 1.46046 1.58105 1.12673 1.20696 1.19258 1.00059 0.80674 0.90973 1.21732 0.96027 1.05664 0.96635 1.23509 1.02459 1.02299 0.88702 1.47749 1.17553 1.32004 1.08120 1.24955 0.89004 0.89677 0.99430 1.22758 0.88923 0.89607 0.99764 1.45243 1.00392 1.11848 1.74591 1.18935 0.86038 0.91762 1.38636 0.89309 1.24872 0.96905 0.97700 1.00418 1.69776 1.15326 1.22385 1.48870 0.85986 0.80584 0.80605 0.77786 1.21122 1.21338 1.20366 1.22485 0.92258 0.87300 0.95061 1.78280 0.96231 1.10361 1.21784 1.75021 1.23697 1.15818 0.98794 1.20346 0.93507 0.99708 0.96969 1.21888 0.95919 1.00309 0.97655 1.21928 0.99504 1.02066 0.94553 1.20497 0.94665 1.02288 0.95901 1.21693 0.95773 1.00933 0.96101 0.91790 0.91248 0.91720 0.76428 0.89924 0.89782 0.79253 0.84667 0.92279 0.93977 0.93094 0.94333 0.89203 0.89905 0.90281 0.88003 0.88173 0.90609 0.90741 0.90502 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.45 37.16 0.31 -0.69 16 2 C -0.08 -0.70 0.65 -155.45 -0.10 -0.80 16 3 C 0.53 6.05 4.73 -10.99 -0.05 6.00 16 4 O -0.54 -7.96 15.30 5.56 0.09 -7.88 16 5 N -0.72 -7.69 5.33 -61.47 -0.33 -8.02 16 6 C 0.22 2.56 6.23 -5.19 -0.03 2.52 16 7 C -0.06 -0.85 6.62 -82.77 -0.55 -1.40 16 8 C -0.02 -0.23 10.72 -17.04 -0.18 -0.41 16 9 N -0.26 -4.18 3.56 -54.57 -0.19 -4.37 16 10 C 0.07 1.22 5.33 -67.81 -0.36 0.86 16 11 C 0.12 2.18 8.49 -8.51 -0.07 2.11 16 12 N -0.59 -13.71 3.78 -184.78 -0.70 -14.41 16 13 C -0.23 -5.82 10.75 -15.06 -0.16 -5.99 16 14 H 0.09 2.19 7.83 -52.48 -0.41 1.78 16 15 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 16 N -0.92 -24.84 11.51 55.49 0.64 -24.20 16 17 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.16 3.15 6.75 -8.51 -0.06 3.09 16 22 N -0.09 -1.49 13.16 60.35 0.79 -0.70 16 23 N -0.27 -4.33 12.41 33.29 0.41 -3.92 16 24 C -0.07 -0.59 4.54 -28.18 -0.13 -0.72 16 25 C -0.14 -1.33 9.06 -35.90 -0.33 -1.65 16 26 C -0.16 -1.55 9.61 -35.90 -0.35 -1.89 16 27 C -0.10 -0.85 5.59 -28.19 -0.16 -1.01 16 28 C -0.11 -0.81 4.73 -26.52 -0.13 -0.94 16 29 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 3.82 7.60 -40.82 -0.31 3.51 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.19 2.35 6.79 -52.49 -0.36 1.99 16 36 H 0.14 2.23 8.14 -51.93 -0.42 1.80 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.04 0.76 6.41 -51.92 -0.33 0.43 16 41 H 0.09 2.01 7.12 -51.93 -0.37 1.64 16 42 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 43 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 44 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.10 0.88 8.06 -52.48 -0.42 0.45 16 46 H 0.08 0.79 7.36 -51.93 -0.38 0.41 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 49 H 0.07 0.49 7.60 -51.93 -0.39 0.10 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -30.39 395.81 -8.35 -38.74 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.57 Total: 4.34 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.43 Total: -1.06 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.63 Total: -55.61 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.39 -8.35 -38.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107173763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.298 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds