Wall clock time and date at job start Wed Apr 1 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.64116 * 2 1 4 4 O 1.21280 * 119.99788 * 114.88674 * 3 2 1 5 5 N 1.34775 * 119.99568 * 294.88475 * 3 2 1 6 6 C 1.46503 * 119.99265 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46762 * 180.02562 * 6 5 3 8 8 C 1.35354 * 126.75054 * 95.00192 * 7 6 5 9 9 N 1.35314 * 106.17410 * 180.02562 * 8 7 6 10 10 C 1.46494 * 125.86847 * 179.97438 * 9 8 7 11 11 C 1.53498 * 114.20187 * 85.00187 * 10 9 8 12 12 N 1.47075 * 87.98673 * 220.14656 * 11 10 9 13 13 C 1.36933 * 136.06282 * 206.86290 * 12 11 10 14 14 H 1.08007 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00468 * 179.97438 * 13 12 11 16 16 N 1.31621 * 119.99479 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00405 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46995 * 90.00040 * 17 15 13 19 19 H 1.48494 * 109.47525 * 209.99860 * 17 15 13 20 20 H 1.48498 * 109.47211 * 330.00585 * 17 15 13 21 21 C 1.47070 * 87.87890 * 27.11988 * 12 11 10 22 22 N 1.28717 * 108.26190 * 0.26427 * 9 8 7 23 23 N 1.28631 * 110.17812 * 359.55623 * 22 9 8 24 24 C 1.53019 * 109.64510 * 120.42351 * 2 1 3 25 25 C 1.50065 * 110.15276 * 169.33129 * 24 2 1 26 26 C 1.29444 * 124.06970 * 342.86816 * 25 24 2 27 27 C 1.50063 * 124.07959 * 0.44446 * 26 25 24 28 28 C 1.53006 * 110.15312 * 342.90846 * 27 26 25 29 29 H 1.08998 * 109.47468 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46985 * 299.99950 * 1 2 3 32 32 H 0.96993 * 120.00504 * 359.97438 * 5 3 2 33 33 H 1.08997 * 109.47389 * 60.00022 * 6 5 3 34 34 H 1.09005 * 109.47112 * 299.99815 * 6 5 3 35 35 H 1.08000 * 126.91601 * 0.03661 * 8 7 6 36 36 H 1.08996 * 113.28547 * 218.06414 * 10 9 8 37 37 H 1.08997 * 113.46961 * 105.36996 * 11 10 9 38 38 H 1.08997 * 113.47174 * 334.92373 * 11 10 9 39 39 H 0.97003 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.09008 * 113.46685 * 87.66545 * 21 12 11 41 41 H 1.08994 * 113.46539 * 218.09534 * 21 12 11 42 42 H 1.09001 * 109.35701 * 289.54087 * 24 2 1 43 43 H 1.09003 * 109.35887 * 49.26097 * 24 2 1 44 44 H 1.07993 * 117.96437 * 162.88875 * 25 24 2 45 45 H 1.08006 * 117.95581 * 180.46556 * 26 25 24 46 46 H 1.09000 * 109.35364 * 103.09946 * 27 26 25 47 47 H 1.09003 * 109.35969 * 222.68063 * 27 26 25 48 48 H 1.08999 * 109.62722 * 289.72268 * 28 27 26 49 49 H 1.09002 * 109.64502 * 169.10144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.6566 1.8418 0.9528 5 7 1.8004 2.2190 -1.0589 6 6 2.2934 3.5986 -1.0590 7 6 1.8985 4.2729 -2.3477 8 6 0.8061 5.0445 -2.5563 9 7 0.8598 5.4314 -3.8519 10 6 -0.1176 6.2826 -4.5347 11 6 0.1258 7.7877 -4.3570 12 7 -1.3291 7.9541 -4.2201 13 6 -2.2331 8.9562 -4.4518 14 1 -1.8968 9.9094 -4.8324 15 6 -3.5815 8.7471 -4.1975 16 7 -3.9912 7.5856 -3.7332 17 14 -4.8146 10.1143 -4.5129 18 1 -5.3170 10.0159 -5.9069 19 1 -5.9515 9.9836 -3.5666 20 1 -4.1555 11.4304 -4.3161 21 6 -1.3849 6.5726 -3.7187 22 7 1.9140 4.9180 -4.3828 23 7 2.5582 4.2262 -3.5104 24 6 2.0444 -0.7298 1.2427 25 6 3.5221 -0.9655 1.1291 26 6 4.1844 -0.8956 0.0192 27 6 3.5689 -0.5597 -1.3075 28 6 2.0500 -0.7331 -1.2431 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3048 1.8810 -1.8210 33 1 3.3795 3.5964 -0.9677 34 1 1.8591 4.1397 -0.2183 35 1 0.0449 5.3001 -1.8341 36 1 -0.3084 5.9792 -5.5640 37 1 0.5360 8.2689 -5.2448 38 1 0.6780 8.0341 -3.4501 39 1 -4.9336 7.4393 -3.5558 40 1 -1.2351 6.4953 -2.6418 41 1 -2.2592 6.0207 -4.0638 42 1 1.8419 -0.1249 2.1266 43 1 1.5338 -1.6883 1.3361 44 1 4.0667 -1.2090 2.0294 45 1 5.2461 -1.0916 0.0498 46 1 3.8037 0.4735 -1.5635 47 1 3.9761 -1.2208 -2.0726 48 1 1.8052 -1.7929 -1.1726 49 1 1.5943 -0.3073 -2.1370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107173763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:03 Heat of formation + Delta-G solvation = 112.013621 kcal Electronic energy + Delta-G solvation = -30039.184517 eV Core-core repulsion = 26004.799241 eV Total energy + Delta-G solvation = -4034.385275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.36455 -41.67548 -40.16379 -38.42356 -36.29847 -34.99986 -34.03979 -33.62869 -32.39289 -31.55750 -29.77462 -28.01719 -27.49001 -26.65353 -26.10360 -24.06123 -23.93938 -23.45195 -22.30243 -21.22694 -20.90841 -19.42849 -18.95395 -18.28548 -17.50138 -17.23654 -17.01608 -16.98255 -16.42334 -16.27273 -16.01607 -15.70943 -15.25339 -14.94252 -14.73942 -14.58515 -14.47994 -14.25500 -13.86396 -13.62858 -13.54075 -13.40120 -13.33153 -13.12508 -13.02755 -12.92201 -12.83953 -12.77328 -12.63699 -12.40635 -12.38081 -12.09887 -11.83389 -11.63742 -11.32859 -11.07367 -11.04524 -10.89905 -10.77894 -10.23774 -10.11772 -9.78796 -9.13076 -8.02490 -5.38246 0.56164 1.23670 1.27436 1.47824 1.48585 1.49865 1.57791 1.72155 2.40747 2.43109 3.06171 3.15157 3.29254 3.34537 3.57665 3.67642 3.73532 3.77389 3.89789 3.99836 4.13283 4.14061 4.24769 4.39826 4.45554 4.48579 4.55448 4.58076 4.59973 4.67732 4.75351 4.84017 4.90011 4.91041 4.94180 4.99084 5.02534 5.03643 5.07231 5.15025 5.25978 5.26750 5.33255 5.34171 5.39131 5.65215 5.75851 5.78100 6.11486 6.55175 6.78612 7.27187 7.45505 7.46560 8.36143 9.14725 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002103 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.604761 B =13313.712872 C =14117.386453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C 0.528 3.472 4 O -0.574 6.574 5 N -0.715 5.715 6 C 0.220 3.780 7 C -0.048 4.048 8 C -0.014 4.014 9 N -0.266 5.266 10 C 0.102 3.898 11 C 0.120 3.880 12 N -0.626 5.626 13 C -0.235 4.235 14 H 0.092 0.908 15 C -0.055 4.055 16 N -0.946 5.946 17 Si 0.982 3.018 18 H -0.283 1.283 19 H -0.293 1.293 20 H -0.270 1.270 21 C 0.160 3.840 22 N -0.106 5.106 23 N -0.279 5.279 24 C -0.069 4.069 25 C -0.149 4.149 26 C -0.174 4.174 27 C -0.098 4.098 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.208 0.792 36 H 0.143 0.857 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 -18.160 6.333 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C 0.316 3.684 4 O -0.453 6.453 5 N -0.368 5.368 6 C 0.095 3.905 7 C -0.187 4.187 8 C -0.167 4.167 9 N -0.058 5.058 10 C 0.000 4.000 11 C -0.007 4.007 12 N -0.352 5.352 13 C -0.362 4.362 14 H 0.109 0.891 15 C -0.249 4.249 16 N -0.594 5.594 17 Si 0.809 3.191 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.194 1.194 21 C 0.033 3.967 22 N -0.085 5.085 23 N -0.146 5.146 24 C -0.106 4.106 25 C -0.167 4.167 26 C -0.192 4.192 27 C -0.135 4.135 28 C -0.141 4.141 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.225 0.775 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.507 -17.760 5.660 21.397 hybrid contribution -1.389 1.069 0.570 1.843 sum 9.118 -16.691 6.229 20.013 Atomic orbital electron populations 1.21864 0.90596 1.04424 1.02814 1.20942 0.98061 0.90285 0.98670 1.20893 0.78226 0.88048 0.81273 1.90674 1.42011 1.76613 1.35955 1.45967 1.57793 1.12128 1.20889 1.19205 0.99694 0.81408 0.90228 1.21898 0.95337 1.05031 0.96438 1.23840 1.02817 1.01789 0.88233 1.47554 1.17394 1.32219 1.08648 1.24354 0.87547 0.89109 0.99033 1.22826 0.86750 0.90674 1.00409 1.45467 1.02190 1.12442 1.75123 1.19256 0.86820 0.92540 1.37632 0.89067 1.25624 0.98548 0.99706 1.01036 1.69922 1.15114 1.23900 1.50418 0.85040 0.78207 0.78581 0.77242 1.20990 1.21980 1.19431 1.22382 0.92710 0.85985 0.95627 1.78290 0.96691 1.11220 1.22305 1.75011 1.24041 1.15952 0.99592 1.20391 0.93235 1.00584 0.96408 1.22076 0.96625 1.00187 0.97797 1.22085 0.99807 1.02300 0.95032 1.20511 0.95804 1.01299 0.95844 1.21724 0.94685 1.01929 0.95794 0.91357 0.89162 0.92431 0.75564 0.90735 0.88935 0.77538 0.83940 0.91127 0.93318 0.93697 0.93682 0.91750 0.91340 0.87913 0.87800 0.88031 0.92602 0.89500 0.88693 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.45 71.98 0.61 -1.05 16 2 C -0.08 -1.19 0.65 -52.79 -0.03 -1.23 16 3 C 0.53 11.62 4.73 87.66 0.41 12.04 16 4 O -0.57 -17.03 15.30 -3.03 -0.05 -17.07 16 5 N -0.72 -14.38 5.33 -466.77 -2.49 -16.87 16 6 C 0.22 4.99 6.23 85.63 0.53 5.53 16 7 C -0.05 -1.25 6.62 41.60 0.28 -0.97 16 8 C -0.01 -0.36 10.72 83.49 0.90 0.53 16 9 N -0.27 -8.07 3.56 -326.58 -1.16 -9.23 16 10 C 0.10 3.34 5.33 45.46 0.24 3.58 16 11 C 0.12 4.30 8.49 83.17 0.71 5.01 16 12 N -0.63 -28.49 3.78 -738.51 -2.79 -31.28 16 13 C -0.24 -11.97 10.75 84.03 0.90 -11.06 16 14 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.05 -2.85 5.50 84.86 0.47 -2.38 16 16 N -0.95 -51.63 11.51 21.65 0.25 -51.38 16 17 Si 0.98 42.09 29.55 68.60 2.03 44.12 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 C 0.16 6.36 6.75 83.17 0.56 6.92 16 22 N -0.11 -3.49 13.16 37.02 0.49 -3.00 16 23 N -0.28 -8.72 12.41 -48.59 -0.60 -9.32 16 24 C -0.07 -1.11 4.54 29.66 0.13 -0.98 16 25 C -0.15 -2.72 9.06 27.04 0.24 -2.48 16 26 C -0.17 -3.20 9.61 27.04 0.26 -2.94 16 27 C -0.10 -1.61 5.59 29.65 0.17 -1.44 16 28 C -0.10 -1.34 4.73 30.73 0.15 -1.20 16 29 H 0.07 0.76 7.95 -2.39 -0.02 0.74 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.41 7.09 7.60 -92.71 -0.70 6.38 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.21 4.71 6.79 -2.91 -0.02 4.69 16 36 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 40 H 0.05 1.73 6.41 -2.38 -0.02 1.72 16 41 H 0.06 2.91 7.12 -2.39 -0.02 2.89 16 42 H 0.07 1.31 7.68 -2.39 -0.02 1.29 16 43 H 0.10 1.15 8.11 -2.39 -0.02 1.13 16 44 H 0.10 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.10 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.06 1.14 7.36 -2.39 -0.02 1.13 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 49 H 0.08 0.90 7.60 -2.39 -0.02 0.89 16 Total: -1.00 -64.86 395.81 2.45 -62.40 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.26 Total: 23.75 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.52 Total: 7.89 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.31 Total: -121.09 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.05 Total: -17.07 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -64.86 2.45 -62.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107173763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.418 kcal (2) G-P(sol) polarization free energy of solvation -64.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds