Wall clock time and date at job start Wed Apr 1 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30696 * 125.63867 * 2 1 4 4 N 1.39912 * 109.51726 * 179.97438 * 3 2 1 5 5 C 1.36321 * 132.16360 * 180.02562 * 4 3 2 6 6 C 1.35754 * 119.15459 * 179.97438 * 5 4 3 7 7 C 1.39960 * 119.35807 * 0.28380 * 6 5 4 8 8 N 1.31503 * 120.10307 * 359.41640 * 7 6 5 9 9 C 1.33379 * 120.85622 * 0.59257 * 8 7 6 10 10 C 1.40651 * 125.63388 * 179.97438 * 2 1 3 11 11 C 1.46579 * 126.53638 * 0.07249 * 10 2 1 12 12 O 1.21709 * 120.00286 * 89.97518 * 11 10 2 13 13 N 1.34782 * 119.99854 * 269.97352 * 11 10 2 14 14 C 1.46508 * 119.99881 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.46766 * 34.99742 * 14 13 11 16 16 C 1.53002 * 109.46971 * 275.00082 * 14 13 11 17 17 C 1.52993 * 109.47193 * 154.99681 * 14 13 11 18 18 C 1.52999 * 109.47400 * 295.00302 * 17 14 13 19 19 C 1.53001 * 109.46972 * 180.02562 * 18 17 14 20 20 C 1.53004 * 109.46769 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.47098 * 180.02562 * 20 19 18 22 22 C 1.36941 * 120.00171 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99545 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00099 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99685 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99774 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46962 * 90.00087 * 26 24 22 28 28 H 1.48505 * 109.46954 * 209.99887 * 26 24 22 29 29 H 1.48499 * 109.47516 * 329.99676 * 26 24 22 30 30 H 1.08997 * 109.46876 * 90.02617 * 1 2 3 31 31 H 1.09003 * 109.47228 * 210.02822 * 1 2 3 32 32 H 1.08998 * 109.46556 * 330.02803 * 1 2 3 33 33 H 1.08001 * 120.41918 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.31693 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.94751 * 179.69763 * 7 6 5 36 36 H 0.97000 * 120.00132 * 359.97438 * 13 11 10 37 37 H 1.09001 * 109.47344 * 59.99599 * 16 14 13 38 38 H 1.08991 * 109.47144 * 179.97438 * 16 14 13 39 39 H 1.09001 * 109.46773 * 300.00105 * 16 14 13 40 40 H 1.09008 * 109.47020 * 55.00140 * 17 14 13 41 41 H 1.09001 * 109.47315 * 174.99793 * 17 14 13 42 42 H 1.09008 * 109.46437 * 299.99651 * 18 17 14 43 43 H 1.09001 * 109.47302 * 59.99483 * 18 17 14 44 44 H 1.08994 * 109.47317 * 299.99175 * 19 18 17 45 45 H 1.09000 * 109.47065 * 59.99866 * 19 18 17 46 46 H 1.09008 * 109.47396 * 300.00081 * 20 19 18 47 47 H 1.09001 * 109.47010 * 59.99778 * 20 19 18 48 48 H 0.97001 * 120.00050 * 359.97438 * 21 20 19 49 49 H 0.96997 * 119.99408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0622 0.0000 4 7 3.6126 0.6737 0.0006 5 6 4.7723 1.3903 0.0013 6 6 5.9581 0.7295 0.0023 7 6 5.9637 -0.6701 -0.0035 8 7 4.8287 -1.3342 0.0018 9 6 3.6600 -0.6915 0.0008 10 6 2.3265 -1.1432 0.0005 11 6 1.8776 -2.5385 -0.0004 12 8 1.6919 -3.1175 -1.0547 13 7 1.6706 -3.1806 1.1665 14 6 1.2226 -4.5754 1.1656 15 1 1.6733 -5.1012 0.3240 16 6 -0.3015 -4.6215 1.0387 17 6 1.6460 -5.2479 2.4730 18 6 3.1731 -5.3133 2.5417 19 6 3.5964 -5.9864 3.8488 20 6 5.1235 -6.0524 3.9171 21 7 5.5289 -6.6974 5.1684 22 6 6.8578 -6.8680 5.4516 23 1 7.6070 -6.5274 4.7522 24 6 7.2420 -7.4787 6.6375 25 7 6.3289 -7.8934 7.4900 26 14 9.0547 -7.7121 7.0233 27 1 9.5606 -6.5260 7.7599 28 1 9.2304 -8.9264 7.8599 29 1 9.8142 -7.8694 5.7569 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3632 0.8902 0.5134 33 1 4.7479 2.4700 0.0010 34 1 6.8882 1.2785 0.0024 35 1 6.9016 -1.2055 -0.0077 36 1 1.8190 -2.7193 2.0068 37 1 -0.6031 -4.1423 0.1073 38 1 -0.6348 -5.6592 1.0376 39 1 -0.7522 -4.0955 1.8803 40 1 1.2687 -4.6708 3.3173 41 1 1.2370 -6.2575 2.5114 42 1 3.5502 -5.8905 1.6974 43 1 3.5821 -4.3037 2.5033 44 1 3.2193 -5.4097 4.6932 45 1 3.1874 -6.9961 3.8866 46 1 5.5005 -6.6294 3.0726 47 1 5.5328 -5.0429 3.8790 48 1 4.8561 -7.0030 5.7968 49 1 6.5973 -8.3198 8.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176616972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:00 Heat of formation + Delta-G solvation = 73.479734 kcal Electronic energy + Delta-G solvation = -29470.872231 eV Core-core repulsion = 25434.816001 eV Total energy + Delta-G solvation = -4036.056230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.82744 -39.76646 -38.52594 -36.79208 -35.16058 -34.61767 -33.14664 -32.57727 -31.58121 -30.38304 -29.61170 -28.67850 -27.37859 -24.98523 -24.60311 -23.97580 -22.28734 -21.65385 -20.76461 -20.59387 -20.37139 -18.65458 -17.88155 -17.34682 -16.96992 -16.72663 -16.26246 -15.98407 -15.01349 -14.87424 -14.66794 -14.59407 -14.04392 -13.97839 -13.84828 -13.63639 -13.53058 -13.26126 -13.10864 -12.87597 -12.85968 -12.73744 -12.69261 -12.29891 -11.70265 -11.68474 -11.52777 -11.35886 -11.18573 -10.93963 -10.77602 -10.62788 -10.37026 -10.26952 -10.22212 -10.00432 -9.93953 -9.87400 -9.62538 -9.08119 -8.82310 -8.34257 -6.86312 -5.72317 -3.00313 0.02167 0.38670 1.50828 1.97039 2.49669 2.91464 3.22075 3.37408 3.45541 3.50235 3.52509 3.66372 3.90846 4.35337 4.47964 4.57375 4.64540 4.68336 4.82405 4.96833 5.04886 5.07932 5.09486 5.15894 5.19171 5.35121 5.40590 5.50231 5.52991 5.54552 5.59477 5.70964 5.78522 5.85290 5.87053 5.99500 6.03264 6.07449 6.19988 6.33697 6.39353 6.44993 6.51983 6.55793 6.94810 6.96729 7.00567 7.17829 7.47926 7.73827 8.21181 8.47382 9.57817 10.17900 10.52600 11.50992 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.002413 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.360556 B =11599.966563 C =13807.033491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.157 3.843 3 N -0.313 5.313 4 N -0.306 5.306 5 C 0.166 3.834 6 C -0.223 4.223 7 C 0.191 3.809 8 N -0.459 5.459 9 C 0.301 3.699 10 C -0.284 4.284 11 C 0.613 3.387 12 O -0.535 6.535 13 N -0.712 5.712 14 C 0.140 3.860 15 H 0.089 0.911 16 C -0.163 4.163 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.125 4.125 20 C 0.153 3.847 21 N -0.735 5.735 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.400 0.600 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.015 0.985 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 21.281 -17.099 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 N -0.137 5.137 4 N -0.074 5.074 5 C 0.031 3.969 6 C -0.247 4.247 7 C 0.008 3.992 8 N -0.170 5.170 9 C 0.071 3.929 10 C -0.301 4.301 11 C 0.397 3.603 12 O -0.411 6.411 13 N -0.363 5.363 14 C 0.036 3.964 15 H 0.107 0.893 16 C -0.221 4.221 17 C -0.164 4.164 18 C -0.152 4.152 19 C -0.163 4.163 20 C 0.026 3.974 21 N -0.379 5.379 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.213 4.213 25 N -0.585 5.585 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.200 0.800 34 H 0.190 0.810 35 H 0.203 0.797 36 H 0.234 0.766 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.216 0.784 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.017 21.184 -17.877 29.828 hybrid contribution 1.226 0.135 0.948 1.556 sum -9.791 21.319 -16.929 28.930 Atomic orbital electron populations 1.20385 0.84894 1.04281 1.04268 1.22378 0.97225 0.88324 0.92408 1.77529 0.82412 1.21222 1.32537 1.46852 1.06665 1.07160 1.46687 1.22149 0.81615 0.99641 0.93539 1.21943 0.98267 0.96393 1.08074 1.23619 0.96687 0.91609 0.87245 1.68218 0.96119 1.37245 1.15417 1.20353 0.93804 0.80523 0.98234 1.19220 0.88855 0.94973 1.27030 1.16726 0.75981 0.83851 0.83734 1.90798 1.51408 1.67477 1.31421 1.46097 1.68371 1.13500 1.08293 1.21067 0.94370 0.81402 0.99544 0.89282 1.22179 0.95428 1.02391 1.02095 1.21929 0.97182 1.01303 0.95973 1.21511 0.94144 1.01158 0.98365 1.21722 0.97482 1.00499 0.96583 1.20642 0.91545 0.95412 0.89838 1.42403 1.05137 1.71189 1.19186 1.19262 0.83949 1.31692 1.01870 0.91253 1.24749 0.97536 1.01731 0.97258 1.69668 1.31517 1.46184 1.11094 0.86181 0.84947 0.77234 0.77817 1.21783 1.21764 1.20765 0.89149 0.89622 0.89686 0.79988 0.81004 0.79656 0.76582 0.92227 0.91518 0.92488 0.91444 0.90224 0.91956 0.92073 0.92259 0.92089 0.96529 0.96692 0.78372 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.26 36.01 0.37 -0.21 16 2 C 0.16 1.72 7.22 -82.16 -0.59 1.13 16 3 N -0.31 -3.53 12.58 33.80 0.43 -3.11 16 4 N -0.31 -3.23 3.86 -11.97 -0.05 -3.28 16 5 C 0.17 1.04 11.29 -16.45 -0.19 0.85 16 6 C -0.22 -1.03 10.05 -39.83 -0.40 -1.43 16 7 C 0.19 1.40 11.28 -17.05 -0.19 1.21 16 8 N -0.46 -5.52 10.47 -12.00 -0.13 -5.64 16 9 C 0.30 3.81 7.90 -155.84 -1.23 2.58 16 10 C -0.28 -3.66 5.91 -104.66 -0.62 -4.28 16 11 C 0.61 8.39 7.25 -12.89 -0.09 8.30 16 12 O -0.53 -9.15 16.77 5.18 0.09 -9.07 16 13 N -0.71 -8.00 4.53 -55.14 -0.25 -8.25 16 14 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 15 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 16 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 17 C -0.13 -1.35 4.75 -26.73 -0.13 -1.48 16 18 C -0.11 -1.54 5.10 -26.73 -0.14 -1.67 16 19 C -0.12 -2.09 5.33 -26.73 -0.14 -2.23 16 20 C 0.15 3.26 6.26 -4.04 -0.03 3.24 16 21 N -0.74 -19.56 5.60 -59.90 -0.34 -19.90 16 22 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 25 N -0.94 -28.99 13.06 55.49 0.72 -28.27 16 26 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.57 7.97 -51.93 -0.41 0.16 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.18 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.17 0.10 8.06 -52.49 -0.42 -0.33 16 35 H 0.19 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.40 3.96 8.58 -40.82 -0.35 3.61 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 43 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.38 10.61 7.67 -40.82 -0.31 10.29 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 415.45 15.07 6.26 6.26 Total: -1.00 -38.82 415.45 -9.49 -48.31 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.76 Total: 6.55 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.44 Total: -1.42 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: 0.39 Total: -68.44 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -38.82 -9.49 -48.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176616972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.792 kcal (2) G-P(sol) polarization free energy of solvation -38.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds