Wall clock time and date at job start Wed Apr 1 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30696 * 125.63867 * 2 1 4 4 N 1.39912 * 109.51726 * 179.97438 * 3 2 1 5 5 C 1.36321 * 132.16360 * 180.02562 * 4 3 2 6 6 C 1.35754 * 119.15459 * 179.97438 * 5 4 3 7 7 C 1.39960 * 119.35807 * 0.28380 * 6 5 4 8 8 N 1.31503 * 120.10307 * 359.41640 * 7 6 5 9 9 C 1.33379 * 120.85622 * 0.59257 * 8 7 6 10 10 C 1.40651 * 125.63388 * 179.97438 * 2 1 3 11 11 C 1.46579 * 126.53638 * 0.07249 * 10 2 1 12 12 O 1.21709 * 120.00286 * 89.97518 * 11 10 2 13 13 N 1.34782 * 119.99854 * 269.97352 * 11 10 2 14 14 C 1.46508 * 119.99881 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.46766 * 34.99742 * 14 13 11 16 16 C 1.53002 * 109.46971 * 275.00082 * 14 13 11 17 17 C 1.52993 * 109.47193 * 154.99681 * 14 13 11 18 18 C 1.52999 * 109.47400 * 295.00302 * 17 14 13 19 19 C 1.53001 * 109.46972 * 180.02562 * 18 17 14 20 20 C 1.53004 * 109.46769 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.47098 * 180.02562 * 20 19 18 22 22 C 1.36941 * 120.00171 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99545 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00099 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99685 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99774 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46962 * 90.00087 * 26 24 22 28 28 H 1.48505 * 109.46954 * 209.99887 * 26 24 22 29 29 H 1.48499 * 109.47516 * 329.99676 * 26 24 22 30 30 H 1.08997 * 109.46876 * 90.02617 * 1 2 3 31 31 H 1.09003 * 109.47228 * 210.02822 * 1 2 3 32 32 H 1.08998 * 109.46556 * 330.02803 * 1 2 3 33 33 H 1.08001 * 120.41918 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.31693 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.94751 * 179.69763 * 7 6 5 36 36 H 0.97000 * 120.00132 * 359.97438 * 13 11 10 37 37 H 1.09001 * 109.47344 * 59.99599 * 16 14 13 38 38 H 1.08991 * 109.47144 * 179.97438 * 16 14 13 39 39 H 1.09001 * 109.46773 * 300.00105 * 16 14 13 40 40 H 1.09008 * 109.47020 * 55.00140 * 17 14 13 41 41 H 1.09001 * 109.47315 * 174.99793 * 17 14 13 42 42 H 1.09008 * 109.46437 * 299.99651 * 18 17 14 43 43 H 1.09001 * 109.47302 * 59.99483 * 18 17 14 44 44 H 1.08994 * 109.47317 * 299.99175 * 19 18 17 45 45 H 1.09000 * 109.47065 * 59.99866 * 19 18 17 46 46 H 1.09008 * 109.47396 * 300.00081 * 20 19 18 47 47 H 1.09001 * 109.47010 * 59.99778 * 20 19 18 48 48 H 0.97001 * 120.00050 * 359.97438 * 21 20 19 49 49 H 0.96997 * 119.99408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0622 0.0000 4 7 3.6126 0.6737 0.0006 5 6 4.7723 1.3903 0.0013 6 6 5.9581 0.7295 0.0023 7 6 5.9637 -0.6701 -0.0035 8 7 4.8287 -1.3342 0.0018 9 6 3.6600 -0.6915 0.0008 10 6 2.3265 -1.1432 0.0005 11 6 1.8776 -2.5385 -0.0004 12 8 1.6919 -3.1175 -1.0547 13 7 1.6706 -3.1806 1.1665 14 6 1.2226 -4.5754 1.1656 15 1 1.6733 -5.1012 0.3240 16 6 -0.3015 -4.6215 1.0387 17 6 1.6460 -5.2479 2.4730 18 6 3.1731 -5.3133 2.5417 19 6 3.5964 -5.9864 3.8488 20 6 5.1235 -6.0524 3.9171 21 7 5.5289 -6.6974 5.1684 22 6 6.8578 -6.8680 5.4516 23 1 7.6070 -6.5274 4.7522 24 6 7.2420 -7.4787 6.6375 25 7 6.3289 -7.8934 7.4900 26 14 9.0547 -7.7121 7.0233 27 1 9.5606 -6.5260 7.7599 28 1 9.2304 -8.9264 7.8599 29 1 9.8142 -7.8694 5.7569 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3632 0.8902 0.5134 33 1 4.7479 2.4700 0.0010 34 1 6.8882 1.2785 0.0024 35 1 6.9016 -1.2055 -0.0077 36 1 1.8190 -2.7193 2.0068 37 1 -0.6031 -4.1423 0.1073 38 1 -0.6348 -5.6592 1.0376 39 1 -0.7522 -4.0955 1.8803 40 1 1.2687 -4.6708 3.3173 41 1 1.2370 -6.2575 2.5114 42 1 3.5502 -5.8905 1.6974 43 1 3.5821 -4.3037 2.5033 44 1 3.2193 -5.4097 4.6932 45 1 3.1874 -6.9961 3.8866 46 1 5.5005 -6.6294 3.0726 47 1 5.5328 -5.0429 3.8790 48 1 4.8561 -7.0030 5.7968 49 1 6.5973 -8.3198 8.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176616972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:59 Heat of formation + Delta-G solvation = 46.815783 kcal Electronic energy + Delta-G solvation = -29472.028466 eV Core-core repulsion = 25434.816001 eV Total energy + Delta-G solvation = -4037.212466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.52202 -40.73065 -39.21753 -37.98222 -36.79383 -35.30787 -34.74880 -33.16861 -32.99789 -31.83094 -30.40054 -29.31507 -28.80387 -25.99624 -25.58103 -25.17008 -23.68185 -22.61916 -22.04534 -21.65870 -21.24014 -19.38880 -19.12418 -18.54010 -18.11772 -17.57377 -17.10975 -16.69874 -16.54693 -16.26103 -15.73217 -15.46921 -15.33252 -15.23990 -14.87099 -14.60911 -14.53968 -14.26099 -14.12326 -14.09099 -13.85618 -13.43385 -13.36875 -13.23839 -13.03724 -12.87327 -12.86202 -12.46408 -12.45531 -12.26660 -12.15981 -12.11579 -11.88700 -11.81321 -11.50936 -11.39480 -11.04265 -10.94668 -10.92100 -10.53531 -10.06504 -9.09898 -9.02672 -7.96945 -5.26596 -0.56187 -0.23358 0.89262 1.22209 1.46073 1.48671 1.50925 1.57407 2.23864 2.38820 2.55078 2.74796 2.97889 3.36223 3.50485 3.59969 3.78102 3.95521 4.00563 4.04736 4.07488 4.12928 4.19931 4.34657 4.37943 4.42978 4.55164 4.61157 4.62746 4.65256 4.69952 4.79661 4.80412 4.87402 4.94329 4.99018 4.99790 5.02462 5.13572 5.22931 5.26030 5.35446 5.43555 5.45168 5.46878 5.51743 5.60220 6.22637 6.25842 6.52444 6.55121 7.24024 7.31329 8.07241 8.31716 9.26886 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.002413 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.360556 B =11599.966563 C =13807.033491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.156 3.844 3 N -0.330 5.330 4 N -0.311 5.311 5 C 0.152 3.848 6 C -0.200 4.200 7 C 0.190 3.810 8 N -0.513 5.513 9 C 0.288 3.712 10 C -0.325 4.325 11 C 0.617 3.383 12 O -0.581 6.581 13 N -0.701 5.701 14 C 0.142 3.858 15 H 0.065 0.935 16 C -0.155 4.155 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.111 4.111 20 C 0.151 3.849 21 N -0.749 5.749 22 C -0.250 4.250 23 H 0.073 0.927 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.977 3.023 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.269 1.269 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.220 0.780 34 H 0.222 0.778 35 H 0.215 0.785 36 H 0.407 0.593 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.013 0.987 47 H 0.014 0.986 48 H 0.374 0.626 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 22.989 -16.968 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.005 4.005 3 N -0.155 5.155 4 N -0.079 5.079 5 C 0.018 3.982 6 C -0.223 4.223 7 C 0.010 3.990 8 N -0.226 5.226 9 C 0.056 3.944 10 C -0.342 4.342 11 C 0.403 3.597 12 O -0.460 6.460 13 N -0.351 5.351 14 C 0.038 3.962 15 H 0.083 0.917 16 C -0.214 4.214 17 C -0.153 4.153 18 C -0.141 4.141 19 C -0.149 4.149 20 C 0.024 3.976 21 N -0.391 5.391 22 C -0.382 4.382 23 H 0.091 0.909 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.805 3.195 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.194 1.194 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.236 0.764 34 H 0.239 0.761 35 H 0.231 0.769 36 H 0.243 0.757 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.031 0.969 47 H 0.032 0.968 48 H 0.206 0.794 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.939 22.935 -17.751 30.658 hybrid contribution 1.075 -0.324 0.871 1.421 sum -8.864 22.611 -16.881 29.577 Atomic orbital electron populations 1.20501 0.82955 1.05312 1.04881 1.22799 0.98477 0.87619 0.91595 1.77429 0.82994 1.21456 1.33596 1.47090 1.07376 1.06888 1.46540 1.23088 0.80766 1.01500 0.92843 1.22497 0.99576 0.95241 1.04990 1.24367 0.96413 0.93436 0.84798 1.68239 0.97120 1.38833 1.18363 1.20474 0.94032 0.81631 0.98287 1.19277 0.89888 0.94824 1.30206 1.16901 0.75097 0.84262 0.83471 1.90754 1.53667 1.68662 1.32957 1.46060 1.67416 1.13536 1.08083 1.21050 0.95563 0.80920 0.98691 0.91658 1.22110 0.93792 1.03348 1.02102 1.21845 0.94825 1.02317 0.96313 1.21393 0.96315 1.00240 0.96200 1.21589 0.94050 1.00957 0.98288 1.20813 0.94756 0.94476 0.87525 1.42632 1.04330 1.71571 1.20602 1.19662 0.85218 1.31273 1.02051 0.90871 1.25636 1.02161 1.01889 0.97230 1.69826 1.33638 1.47194 1.11455 0.85090 0.79579 0.76962 0.77843 1.21062 1.21920 1.19427 0.88642 0.89220 0.87932 0.76359 0.76087 0.76881 0.75712 0.93519 0.90252 0.90839 0.89856 0.89016 0.92749 0.92538 0.91996 0.92088 0.96920 0.96799 0.79406 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.26 71.24 0.73 -0.41 16 2 C 0.16 3.50 7.22 43.32 0.31 3.81 16 3 N -0.33 -7.45 12.58 -46.96 -0.59 -8.04 16 4 N -0.31 -6.43 3.86 -191.79 -0.74 -7.17 16 5 C 0.15 1.55 11.29 83.42 0.94 2.49 16 6 C -0.20 -1.20 10.05 22.11 0.22 -0.97 16 7 C 0.19 2.46 11.28 85.16 0.96 3.42 16 8 N -0.51 -12.46 10.47 -191.88 -2.01 -14.47 16 9 C 0.29 7.46 7.90 133.98 1.06 8.52 16 10 C -0.33 -8.78 5.91 -19.89 -0.12 -8.90 16 11 C 0.62 17.82 7.25 86.42 0.63 18.44 16 12 O -0.58 -21.16 16.77 -4.38 -0.07 -21.24 16 13 N -0.70 -16.09 4.53 -446.58 -2.02 -18.11 16 14 C 0.14 3.07 2.57 44.99 0.12 3.18 16 15 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16 16 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 17 C -0.12 -2.32 4.75 30.59 0.15 -2.18 16 18 C -0.10 -2.74 5.10 30.59 0.16 -2.59 16 19 C -0.11 -3.64 5.33 30.60 0.16 -3.48 16 20 C 0.15 6.42 6.26 86.38 0.54 6.96 16 21 N -0.75 -40.10 5.60 -343.43 -1.92 -42.02 16 22 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 23 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 25 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 26 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 27 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.20 7.97 -2.39 -0.02 1.18 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.22 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.22 -0.96 8.06 -2.91 -0.02 -0.98 16 35 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.41 8.10 8.58 -92.71 -0.80 7.31 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 43 H 0.06 1.56 7.75 -2.39 -0.02 1.54 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.37 21.00 7.67 -92.71 -0.71 20.29 16 49 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -87.27 415.45 2.26 -85.01 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.54 Total: 29.08 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 7.84 Total: 8.48 kcal Atomic # 7 Polarization: -143.07 SS G_CDS: -7.00 Total: -150.07 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.07 Total: -21.24 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -87.27 2.26 -85.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176616972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.826 kcal (2) G-P(sol) polarization free energy of solvation -87.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds