Wall clock time and date at job start Wed Apr 1 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30696 * 125.64260 * 2 1 4 4 N 1.39904 * 109.52537 * 180.02562 * 3 2 1 5 5 C 1.36311 * 132.15992 * 180.02562 * 4 3 2 6 6 C 1.35760 * 119.15391 * 179.97438 * 5 4 3 7 7 C 1.39964 * 119.35398 * 0.02562 * 6 5 4 8 8 N 1.31498 * 120.10911 * 0.02562 * 7 6 5 9 9 C 1.33385 * 120.85259 * 359.64549 * 8 7 6 10 10 C 1.40646 * 125.63756 * 180.02562 * 2 1 3 11 11 C 1.46588 * 126.53435 * 359.97438 * 10 2 1 12 12 O 1.21720 * 119.99636 * 90.02792 * 11 10 2 13 13 N 1.34772 * 120.00346 * 270.02131 * 11 10 2 14 14 C 1.46498 * 120.00078 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47015 * 324.99960 * 14 13 11 16 16 C 1.53000 * 109.47046 * 205.00299 * 14 13 11 17 17 N 1.46504 * 109.47261 * 54.99916 * 16 14 13 18 18 C 1.36939 * 120.00041 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99997 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00361 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00247 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46891 * 90.00101 * 22 20 18 24 24 H 1.48497 * 109.47358 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47012 * 330.00534 * 22 20 18 26 26 C 1.52994 * 109.47321 * 84.99937 * 14 13 11 27 27 C 1.52997 * 109.47404 * 295.00158 * 26 14 13 28 28 C 1.53002 * 109.46817 * 294.99916 * 27 26 14 29 29 C 1.53000 * 109.47060 * 175.00005 * 27 26 14 30 30 H 1.09000 * 109.47321 * 269.98065 * 1 2 3 31 31 H 1.08999 * 109.46638 * 29.97810 * 1 2 3 32 32 H 1.08996 * 109.47037 * 149.97777 * 1 2 3 33 33 H 1.07996 * 120.42501 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.31624 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.94221 * 179.97438 * 7 6 5 36 36 H 0.96995 * 120.00034 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.47250 * 174.99730 * 16 14 13 38 38 H 1.09002 * 109.47443 * 294.99939 * 16 14 13 39 39 H 0.96993 * 119.99618 * 0.02562 * 17 16 14 40 40 H 0.96999 * 120.00488 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47017 * 174.99801 * 26 14 13 42 42 H 1.09008 * 109.46970 * 55.00109 * 26 14 13 43 43 H 1.09002 * 109.47153 * 54.99686 * 27 26 14 44 44 H 1.08996 * 109.47407 * 60.00219 * 28 27 26 45 45 H 1.09000 * 109.46986 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.47075 * 299.99262 * 28 27 26 47 47 H 1.09004 * 109.46724 * 180.02562 * 29 27 26 48 48 H 1.09001 * 109.47194 * 299.99650 * 29 27 26 49 49 H 1.08992 * 109.47399 * 59.99823 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2686 1.0621 0.0000 4 7 3.6127 0.6737 -0.0006 5 6 4.7721 1.3905 -0.0004 6 6 5.9581 0.7298 -0.0006 7 6 5.9637 -0.6699 -0.0016 8 7 4.8288 -1.3341 -0.0028 9 6 3.6601 -0.6914 0.0040 10 6 2.3265 -1.1431 -0.0005 11 6 1.8777 -2.5385 -0.0006 12 8 1.6915 -3.1178 -1.0548 13 7 1.6714 -3.1802 1.1665 14 6 1.2234 -4.5750 1.1663 15 1 0.5512 -4.7406 0.3243 16 6 0.4867 -4.8742 2.4734 17 7 -0.6026 -3.9108 2.6517 18 6 -1.4053 -3.9819 3.7589 19 1 -1.2355 -4.7485 4.5005 20 6 -2.4376 -3.0695 3.9275 21 7 -3.2088 -3.1375 4.9918 22 14 -2.7316 -1.7440 2.6443 23 1 -3.6788 -2.2496 1.6185 24 1 -3.3059 -0.5408 3.2982 25 1 -1.4437 -1.3881 1.9963 26 6 2.4356 -5.5000 1.0408 27 6 3.1000 -5.2881 -0.3210 28 6 2.1408 -5.7253 -1.4299 29 6 4.3817 -6.1201 -0.3980 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.7477 2.4702 0.0008 34 1 6.8881 1.2789 0.0000 35 1 6.9017 -1.2051 -0.0022 36 1 1.8195 -2.7185 2.0065 37 1 0.0766 -5.8835 2.4366 38 1 1.1822 -4.7948 3.3090 39 1 -0.7551 -3.2226 1.9854 40 1 -3.9300 -2.4996 5.1099 41 1 2.1120 -6.5370 1.1298 42 1 3.1494 -5.2729 1.8327 43 1 3.3435 -4.2331 -0.4463 44 1 1.2277 -5.1326 -1.3751 45 1 2.6139 -5.5739 -2.4002 46 1 1.8973 -6.7803 -1.3047 47 1 4.8553 -5.9688 -1.3681 48 1 5.0651 -5.8087 0.3920 49 1 4.1382 -7.1751 -0.2728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753740937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:12 Heat of formation + Delta-G solvation = 89.674969 kcal Electronic energy + Delta-G solvation = -31630.789279 eV Core-core repulsion = 27595.435327 eV Total energy + Delta-G solvation = -4035.353952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65593 -39.76527 -38.42150 -36.58473 -35.00694 -34.44048 -33.38176 -32.37251 -31.37575 -30.09423 -29.05711 -28.39596 -26.83417 -25.71353 -24.84142 -24.18930 -22.46665 -21.60341 -20.70042 -20.04270 -19.58897 -18.49863 -17.85034 -17.55063 -17.01671 -16.47534 -15.97315 -15.71831 -15.44561 -14.72202 -14.47951 -14.11229 -13.97772 -13.72614 -13.58381 -13.49892 -13.34800 -13.22473 -12.84844 -12.72574 -12.57138 -12.46439 -12.15167 -12.04152 -11.94960 -11.61732 -11.46525 -11.33623 -11.17859 -11.02824 -10.84052 -10.42967 -10.24168 -10.18060 -10.08226 -9.98441 -9.65170 -9.60087 -9.56531 -8.91720 -8.59747 -8.14070 -7.24737 -5.77147 -3.13140 0.14849 0.52009 1.69191 2.21539 2.80849 3.04190 3.32562 3.39474 3.44585 3.47961 3.54850 3.89963 4.00839 4.47842 4.58184 4.63525 4.84535 4.90305 5.02167 5.18777 5.21662 5.26053 5.31022 5.44623 5.51309 5.57390 5.59272 5.61520 5.68923 5.71151 5.80897 5.89515 5.96066 6.06338 6.08538 6.09244 6.14866 6.17685 6.30124 6.34842 6.44488 6.52110 6.64209 6.78702 6.86774 6.95807 7.15887 7.28795 7.88662 7.98664 8.41162 8.57525 9.20593 9.92588 10.12814 11.40949 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008811 B = 0.004665 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.910942 B = 6000.609926 C = 8162.044090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.164 3.836 3 N -0.312 5.312 4 N -0.307 5.307 5 C 0.169 3.831 6 C -0.230 4.230 7 C 0.183 3.817 8 N -0.457 5.457 9 C 0.293 3.707 10 C -0.272 4.272 11 C 0.606 3.394 12 O -0.528 6.528 13 N -0.702 5.702 14 C 0.132 3.868 15 H 0.092 0.908 16 C 0.149 3.851 17 N -0.754 5.754 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.934 5.934 22 Si 0.879 3.121 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.269 1.269 26 C -0.120 4.120 27 C -0.095 4.095 28 C -0.137 4.137 29 C -0.143 4.143 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.403 0.597 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.363 0.637 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.533 6.812 -11.891 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.004 3.996 3 N -0.136 5.136 4 N -0.075 5.075 5 C 0.033 3.967 6 C -0.254 4.254 7 C -0.001 4.001 8 N -0.168 5.168 9 C 0.064 3.936 10 C -0.289 4.289 11 C 0.391 3.609 12 O -0.405 6.405 13 N -0.353 5.353 14 C 0.027 3.973 15 H 0.110 0.890 16 C 0.021 3.979 17 N -0.400 5.400 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.582 5.582 22 Si 0.709 3.291 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.196 1.196 26 C -0.159 4.159 27 C -0.113 4.113 28 C -0.194 4.194 29 C -0.200 4.200 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.198 0.802 34 H 0.187 0.813 35 H 0.199 0.801 36 H 0.237 0.763 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.196 0.804 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.945 6.635 -12.425 25.241 hybrid contribution 0.023 1.399 -0.307 1.432 sum 20.968 8.034 -12.732 25.813 Atomic orbital electron populations 1.20630 0.84744 1.04501 1.05070 1.22453 0.97322 0.88314 0.91513 1.77567 0.82254 1.21192 1.32588 1.46866 1.06717 1.07128 1.46817 1.22116 0.81735 0.99595 0.93233 1.21845 0.98087 0.96360 1.09138 1.23483 0.96528 0.91573 0.88469 1.68156 0.96077 1.37302 1.15232 1.20281 0.93654 0.80593 0.99064 1.19386 0.88688 0.95386 1.25401 1.16701 0.76542 0.83530 0.84129 1.90792 1.51470 1.66835 1.31401 1.46023 1.67478 1.13470 1.08311 1.21467 0.95480 0.80037 1.00288 0.89028 1.20950 0.89839 0.94064 0.93026 1.42674 1.35804 1.35556 1.25951 1.19051 1.07253 1.12909 0.98155 0.89213 1.24663 0.97937 0.99091 0.97381 1.69699 1.21329 1.38955 1.28212 0.86660 0.78072 0.82510 0.81856 1.21047 1.21831 1.19561 1.21992 0.97033 0.99402 0.97506 1.21157 0.94575 1.01060 0.94516 1.21825 1.00737 0.99497 0.97364 1.21826 0.97698 0.99656 1.00824 0.88368 0.89714 0.89283 0.80172 0.81332 0.80114 0.76290 0.93996 0.95073 0.80424 0.93095 0.91107 0.91903 0.90086 0.90730 0.93977 0.94332 0.93407 0.93333 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.26 36.01 0.37 -0.93 16 2 C 0.16 2.56 7.22 -82.17 -0.59 1.97 16 3 N -0.31 -4.60 12.58 33.80 0.43 -4.18 16 4 N -0.31 -3.93 3.86 -11.97 -0.05 -3.97 16 5 C 0.17 1.31 11.29 -16.45 -0.19 1.12 16 6 C -0.23 -1.21 10.05 -39.82 -0.40 -1.61 16 7 C 0.18 1.35 11.28 -17.05 -0.19 1.16 16 8 N -0.46 -5.71 10.47 -12.00 -0.13 -5.84 16 9 C 0.29 4.26 7.90 -155.83 -1.23 3.03 16 10 C -0.27 -4.42 5.91 -104.65 -0.62 -5.04 16 11 C 0.61 10.35 5.83 -12.90 -0.08 10.28 16 12 O -0.53 -9.94 12.06 5.17 0.06 -9.88 16 13 N -0.70 -11.46 4.46 -55.14 -0.25 -11.71 16 14 C 0.13 2.14 2.33 -67.93 -0.16 1.98 16 15 H 0.09 1.62 5.92 -51.93 -0.31 1.32 16 16 C 0.15 2.79 5.82 -4.04 -0.02 2.77 16 17 N -0.75 -17.39 5.24 -59.90 -0.31 -17.71 16 18 C -0.24 -6.78 10.47 -15.06 -0.16 -6.93 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 22 Si 0.88 21.48 27.74 -169.99 -4.71 16.76 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.27 -5.87 5.04 56.52 0.28 -5.59 16 26 C -0.12 -1.69 4.36 -26.74 -0.12 -1.80 16 27 C -0.09 -1.35 2.38 -90.62 -0.22 -1.57 16 28 C -0.14 -2.02 8.03 37.16 0.30 -1.72 16 29 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 30 H 0.10 1.48 6.66 -51.93 -0.35 1.14 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.31 7.97 -51.93 -0.41 0.89 16 33 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.17 0.16 8.06 -52.49 -0.42 -0.27 16 35 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.40 6.54 8.58 -40.82 -0.35 6.19 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.26 5.20 -40.82 -0.21 8.05 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.08 1.34 5.19 -51.93 -0.27 1.07 16 44 H 0.07 1.24 4.75 -51.93 -0.25 1.00 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -35.76 393.68 -8.62 -44.39 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.32 Total: 13.19 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.05 Total: 1.36 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: 0.47 Total: -71.76 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.76 -8.62 -44.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753740937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.061 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds